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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 871 fasta sequence
[AGCTGTGTTAGCTTATTAAACCAGAAACAACAATTAAAACTAATACAGCGGATAATCCGTCGAACAGATAGAATATCATTTCCATAAGAAATATTAGAGATGTATGGAATATTTTCCTAAAGATTAAAAAAAAAAACAAACAGTATAACCCAGACTGCTGGAAGAGGGCGAACAGGTTGGAAAAGTTGTTGTTAAATTGTTAAACAAAAGACCAATATTTAGACCTTTGCGTCAGAGACAGAAGCTAATTGGAAATGTATGGTTTGGCTAAATGGCAATGGTTTGTTTCTGTGTGTGTGTGCAAAAACGCACTTGAAATTAT-CCGGTATCTAT-AAACTCCAGTACAAAACAAAACGATACGACTACTTAAGCCAGCCACACCCTGTATTGCAAAAACCAATACTCATACCAATCTTCTTCGCAAAGCAAAATGGGAATTCTGGTT-TGTATACCAGCGCAGTATGCAAAAGTTTTCCGTTAGTCCGGTATACGGGTTAGGCGAATCGTGCGAGTTGTAGCTATAGAACGATGAAAAGCAGCATTTACATTTATTCTAAATGTGCGTGTATTGTGAAAAGTAGTGAAACATTTGGGAAACCAAAACGGTGTTGTAAGCAAAAGCATGATGTTAGGAGGTAAATTTGTGTTGATCTACTGTTCTTCTGTGAGAGAAATGTTTTGGCCAGTAAATAGTTTCGGTTCTATATTAACTTTCCGTNGTACTCTTTCTGTGCAAATAGTTACTTTGTGCACAGCCTCTGCNCNGGCTACCAATGGCTCCAGCTCCTAACNTTGGGCTGCTGGCACATTCGNATCTTTATCAANACGGGCAACCCAATTGCGCCCACATGGTAACAAGCTCCACTNGCAC]
[+] EMBL BX614213 [AGCTGTGTTAGCTTATTAAACCAGAAACAACAATTAAAACTAATACAGCGGATAATCCGTCGAACAGATAGAATATCATTTCCATAAGAAATATTAGAGATGTATGGAATATTTTCCTAAAGATTAAAAAAAAAAACAAACAGTATAACCCAGACTGCTGGAAGAGGGCGAACAGGTTGGAAAAGTTGTTGTTAAATTGTTAAACAAAAGACCAATATTTAGACCTTTGCGTCAGAGACAGAAGCTAATTGGAAATGTATGGTTTGGCTAAATGGCAATGGTTTGTTTCTGTGTGTGTGTGCAAAAACGCACTTGAAATTAT CCGGTATCTAT AAACTCCAGTACAAAACAAAACGATACGACTACTTAAGCCAGCCACACCCTGTATTGCAAAAACCAATACTCATACCAATCTTCTTCGCAAAGCAAAATGGGAATTCTGGTT TGTATACCAGCGCAGTATGCAAAAGTTTTCCGTTAGTCCGGTATACGGGTTAGGCGAATCGTGCGAGTTGTAGCTATAGAACGATGAAAAGCAGCATTTACATTTATTCTAAATGTGCGTGTATTGTGAAAAGTAGTGAAACATTTGGGAAACCAAAACGGTGTTGTAAGCAAAAGCATGATGTTAGGAGGTAAATTTGTGTTGATCTACTGTTCTTCTGTGAGAGAAATGTTTTGGCCAGTAAATAGTTTCGG ]
[+] EMBL AL692386 [ ccgaggttAAACGCACTTGAAATTATCCCGGTATCTATNNAACTCCTGTACAAAACAAAACGATACGACTACTTAAGCCAGCCACACCCTGTATTGCAAAAACCAATACTCATACCAATCTTCTTCGCAAAGCAAAATGGGAATTCTGGTTATGTATACCAGCGCAGTATGCAAAAGTTTTCCGTTAGTCCGGTATACGGGTTAGGCGAATCGTGCGAGTTGTAGCTATAGAACGATGAAAAGCAGCATTTACATTTATTCTAAATGTGCGTGTATTGTGAAAAGTAGTGAAACATTTGGGAAACCAAAACGGTGTTGTAAACAAAAGCATGATGTTAGGAGGTAAA TNGTGTTGATCTACTGTTCTTCTGTGAGAGAAATG TAAGGCCAGTAATTAGTTTCGGTTCTATATTAACTTTCCGTNGTACTCTTTCTGTGCAAATAGTTACTTTGTGCACAGCCTCTGCNCNGGCTACCAATGGCTCCAGCTCCTAACNTTGGGCTGCTGGCACATTCGNATCTTTATCAANACGGGCAACCCAATTGCGCCCACATGGTAACAAGCTCCACTNGCAC]
consensusID : consensus_3678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence
[CGCCCGAGGTTATCTTTCTCCATATTGGCGAACGCGCACTGACACGTGTTATCGGGGCGAAGCCTGGCACGAGCACGAGTGCACGATGAAAGAGAAATACTGATAATAACTATTTTTTGTAAGAACACAACATAAAGCAATGCAGAAACAATAATGTTAAAACAAGAATACCGGACGCCAGGGAAATCAATCATTCCGGCAAAACAGAACAAAAACTATGTACCAGAGCTGGGACATAAACTTGTTGACGCTGTTGTAAAAGTATGTGTTTCTGTAAGTATCTAATTTTGTACGAGAAAGATTTCCGACACGCGCGTCAGTAATGATTTCAGCTGTGTTAGCTTATTAAACCAGAAACAACCAATTAACAACTAATACAGCGGATAATCCGTCGAACAGATAGAATATCATTTCCATAAGAAATATTAGAGATGTCATGGAATATTTTTCCTAAAGATTCAACCACACAACAAACAACACAGTATAACCCAAGACTGCTGGACAGAGGGCGAACAGGTTGGAACAGTTGTTGTTANCATNGTTAACACCAAAAGACCAAATATTTAGCACCTTTGCGTCAGAGACAGAAGCTAATTCGGAAACTGTANTGGTCTTGGCCTAACTGGCAACTGGGN]
[+] EMBL AL693252 [CGCCCGAGGTTATCTTTCTCCATATTGGCGAACGCGCACTGACACGTGTTATCGGGGCGAAGCCTGGCACGAGCACGAGTGCACGATGAAAGAGAAATACTGATAATAACTATTTTTTGTAAGAACACAACATAAAGCAATGCAGAAACAATAATGTTAAAACAAGAATACCGGACGCCAGGGAAATCAATCATTCCGGCAAAACAGAACAAAAACTATGTACCAGAGCTGGGACATAAACTTGTTGACGCTGTTGTAAAAGTATGTGTTTCTGTAAGTATCTAATTTTGTACGAGAAAGATTTCCGACACGCGCGTCAGTAATGATTTCAGCTGTGTTAGCTTATTAAACCAGAAACAACCAATTAACAACTAATACAGCGGATAATCCGTCGAACAGATAGAATATCATTTCCATAAGAAATATTAGAGATGTCATGGAATATTTTTCCTAAAGATTCAACCACACAACAAACAACACAGTATAACCCAAGACTGCTGGACAGAGGGCGAACAGGTTGGAACAGTTGTTGTTANCATNGTTAACACCAAAAGACCAAATATTTAGCACCTTTGCGTCAGAGACAGAAGCTAATTCGGAAACTGTANTGGTCTTGGCCTAACTGGCAACTGGGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3678#0 -------AGCTGTGTTAGCTTATTAAACCAGAAACAACAATTAAAACTAATACAGCGGAT 53
consensus_3678#1 CGCCCGAGGTTATCTTTCTCCATATTGGCGAACGCG-CACTGACACGTGTTATCGGGGCG 59
* * * ** ** * * * ** * * * * ** * **
consensus_3678#0 AATCCGTCGAACAGATA-GAATATCATTTCCATAAGAAATATTAGAGATGTATGGAATAT 112
consensus_3678#1 AAGCC-TGGCACGAGCACGAGTGCACGATGAAAGAGAAATACTGATAATA-----ACTAT 113
** ** * * ** * ** * * * ******* * ** * ***
consensus_3678#0 TTTCCTAAAGATTAAAAAAAAAAACAAACAGTATAACCCAGACTGCTGGAAGAGGGCGAA 172
consensus_3678#1 TTTTTGTAAGAACACAACATAAAGCAA--TGCAGAAACAATAATGTTAAAACAAGA-ATA 170
*** **** * ** * *** *** * * ** * * * ** * ** * * *
consensus_3678#0 CAGGTTGGAAAAGTTGTTGTTAAATTGTTAAACAAAAGACCAATATTTAGACCTTTGCGT 232
consensus_3678#1 CCGGACGCCAGGGAAATC----AATCATTCCGGCAAAACAGAACA---AAAACTATGTAC 223
* ** * * * * *** ** *** ** * * * ** **
consensus_3678#0 CAGAGACAGAAGCTAATTGGAAATGTATGGTTTGGCTAAATGGCAATGGTTTGTTTCTGT 292
consensus_3678#1 CAGAGCTGGGACATAA----------ACTTGTTGACGCTGTTGTAAAAGTATGTGTTTCT 273
***** * * *** * *** * * * ** ** *** * * *
consensus_3678#0 GTGTGTGTGCAAAAACGCACTTGAAATTATCCGGTATCTATAAACTCCAGTACAAAACAA 352
consensus_3678#1 GTAAGTATCTAATTTTGTACGAGAAAGATTTCCG---ACACGCGCGTCAGTAATGATTTC 330
** ** * ** * ** **** * * * * * ***** *
consensus_3678#0 AACGATACGA-CTACTTAAGCCAGCCACACCCTGTATTGCAAAAACCAATACTCATACCA 411
consensus_3678#1 AGCTGTGTTAGCTTATTAAACCAGAAACAACCAAT----TAACAACTAATACAGCGGATA 386
* * * * ** **** **** *** ** * ** *** ***** *
consensus_3678#0 ATCTTCTTCGCAAAGCAAAATGGGAATTCTGGTTTGTATACCAGCGCAGT-ATGCAAAAG 470
consensus_3678#1 ATCCGTCGAACAGA-TAGAATATCATTTCCATAAGAAATATTAGAGATGTCATGGAATAT 445
*** ** * * *** * *** *** ** * ** *** ** *
consensus_3678#0 TTTTCCGTTAGTCCGGTATACGGGTTAGGCGA-ATCGTGCGAGTTGTAGCTATAGAAC-G 528
consensus_3678#1 TTTTCCTAAAGATTCAACCACACAACAAACAACACAGTATAACCCAAGACTGCTGGACAG 505
****** ** ** * * * * ** * ** * ** *
consensus_3678#0 ATGAAAAGCAGCATTTA-CATTTATTCTAAATGTGCGTGTATTGTGAAAAGTAGTGAAAC 587
consensus_3678#1 AGGGCGAACAGGTTGGAACAGTTGTTGTTANCATN-GT-TAACACCAAAAG--ACCAAAT 561
* * * *** * * ** ** ** * * * ** ** ***** ***
consensus_3678#0 ATTTGGGAAACCAAAACGGTGTTGTAAGCAAAAGCATGATGTTAGGAGGTAAATTTGTGT 647
consensus_3678#1 ATTTAG-----CACCTTTGCGTCAGAGACAGAAGC-TAAT-TCGGAAACTGTANTGGTCT 614
**** * ** * ** * ** **** * ** * * * * * * ** *
consensus_3678#0 TGATCTACTGTTCTTCTGTGAGAGAAATGTTTTGGCCAGTAAATAGTTTCGGTTCTATAT 707
consensus_3678#1 TGGCCTAACTGGCAACTGGGN--------------------------------------- 635
** *** * *** *
consensus_3678#0 TAACTTTCCGTNGTACTCTTTCTGTGCAAATAGTTACTTTGTGCACAGCCTCTGCNCNGG 767
consensus_3678#1 ------------------------------------------------------------
consensus_3678#0 CTACCAATGGCTCCAGCTCCTAACNTTGGGCTGCTGGCACATTCGNATCTTTATCAANAC 827
consensus_3678#1 ------------------------------------------------------------
consensus_3678#0 GGGCAACCCAATTGCGCCCACATGGTAACAAGCTCCACTNGCAC 871
consensus_3678#1 --------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||