cluster # 3682

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3682 cluster # 3682 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3682#0 length = 756 sequences # 2

consensus_3682#1 length = 677 sequences # 1

consensusID : consensus_3682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 756
fasta sequence

                              [TTCATCAAAACTTAGAACACATTCTCGATCTTTGTTGCTAAATGTTGTGGCCGCGGTTCCAACTAAATTCAAAACGTCTTCTAAGATGCCTTGCTTTAAGTTAATTTTTCGTCCATACCTTTGTAAGGTGGATGGAGCAGCCATAGGTACCTTCAAATCTTTTCCTACGTAACAATATGCCCGCGAACTAAAATATTTCAAGGTAAACGCCTTGCTAATTTCCTCTTTGGTCCATCGTACTCGCTTCTTGTGCTTATTAATCAAATCAATTTGATTGCTA-TCAGAGTGTCTCCTAACATTTTCTTCATTATTGGAACTACATCTGAACTTTGGATGCTTTCTTTCTGAATGGTTTCCAATTTTCTATTCCAAATTCACATTTNTGTTTCTTCTAACTGCTGTATTTTCTTGAACAACCGAATCCAAATGCTTTTTCAAATTATGGTTTGCTGCTTTCTAGCGTATTTTAGCCTCCTCTAGTTGAGCAGTTAAGGCAGAAATTCTCGCGAAGTTCTAACGGAATTCAATNTTGTTACATCTTTCNAATTCGCACATGGCACATTCTATATCTCACACGACTGACTATAGCTCATGTCGGCG-TGCTCTAGAAAAACCCTCGGTTCAAGCTGTGATCTTGCGTCATCATTAGTTACTGTTCGAGCATTGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACTACAAACGTATTATNAAACATAATTANCAAACAGTAAACACATAAATCATATA]

[+] EMBL AL934791             [TTCATCAAAACTTAGAACACATTCTCGATCTTTGTTGCTAAATGTTGTGGCCGCGGTTCCAACTAAATTCAAAACGTCTTCTAAGATGCCTTGCTTTAAGTTAATTTTTCGTCCATACCTTTGTAAGGTGGATGGAGCAGCCATAGGTACCTTCAAATCTTTTCCTACGTAACAATATGCCCGCGAACTAAAATATTTCAAGGTAAACGCCTTGCTAATTTCCTCTTTGGTCCATCGTACTCGCTTCTTGTGCTTATTAATCAAATCAATTTGATTGCTA TCAGAGTGTCTCCTAACATTTTCTTCATTATTGGAACTACATCTGAACTTTGGATGCTTTCTTTCTGAATGGTTTCCAATTTTCTATTCCAAATTCACATTTNTGTTTCTTCTAACTGCTGTATTTTCTTGAACAACCGAATCCAAATGCTTTTTCAAATTATGGTTTGCTGCTTTCTAGCGTATTTTAGCCTCCTCTAGTTGAGCAGTTAAGGCAGAAATTCTCGCGAAGTTCTAACGGAATTCAATNTTGTTACATCTTTCNAATTCGCACATGGCACATTCTATATCTCACACGACTGACTATAGCTCATGTCGGCG TGCTCTAGAAAAACCCTCGGTTCAAGCTGTGATCTTGCGTCATCATTAGTTACTGTTCGAGCATTGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACTACAAACGTATTATNAAACATAATTANCAAACAGTAAACACATAAATCATATA]
[+] EMBL BX615931             [                                                                                                                      CTTTGTAAGGTGGATGGAGCAGCCATAGGTACCTTCAAATCTTTTCCTACGTAACAATATGCCCGCGAACTAAAATATTTCAAGGTAAACGCCTTGCTAATTTCCTCTTTGGTCCATCGTACTCGCTTCTTGTGCTTATTAATCAAATCAATTTGATTGCTAGTCAGAGTGTCTCCTAACATTTTCTTCATTATTGGAACTACATCTGAACTTTGGATGCTTTCTTTCTGAATGGTTTCCAATTTTTTTTTCCAAATTCACATTT TGTTTCTT TAA TGCTGTATTTTCTTGAACAACCGAATCCAAATGCTTTTTGAAATTATGGTTTGCTGCTTT TAG GT TTTTAGCCTCCTCTAGTTGAGCAGTTAAGGCAGAAATTTT   TAA TT TAA GGAATTCAAT TTGTT CATCTTT TTATTCGCACATGGCACATTCT T TCTCACACGACTGA TATAGCTCATGTCGGCGTTGCTCTAGAAAAA CCTC GTTCAA  T TGTTCTTGC TCATCATTAGTTA TGTTCGAGCA TGGAATTACAGATGGAATTGCTTTTAACCGAAACACA                                                       ]




>consensus_3682#0
TTCATCAAAACTTAGAACACATTCTCGATCTTTGTTGCTAAATGTTGTGGCCGCGGTTCC
AACTAAATTCAAAACGTCTTCTAAGATGCCTTGCTTTAAGTTAATTTTTCGTCCATACCT
TTGTAAGGTGGATGGAGCAGCCATAGGTACCTTCAAATCTTTTCCTACGTAACAATATGC
CCGCGAACTAAAATATTTCAAGGTAAACGCCTTGCTAATTTCCTCTTTGGTCCATCGTAC
TCGCTTCTTGTGCTTATTAATCAAATCAATTTGATTGCTATCAGAGTGTCTCCTAACATT
TTCTTCATTATTGGAACTACATCTGAACTTTGGATGCTTTCTTTCTGAATGGTTTCCAAT
TTTCTATTCCAAATTCACATTTNTGTTTCTTCTAACTGCTGTATTTTCTTGAACAACCGA
ATCCAAATGCTTTTTCAAATTATGGTTTGCTGCTTTCTAGCGTATTTTAGCCTCCTCTAG
TTGAGCAGTTAAGGCAGAAATTCTCGCGAAGTTCTAACGGAATTCAATNTTGTTACATCT
TTCNAATTCGCACATGGCACATTCTATATCTCACACGACTGACTATAGCTCATGTCGGCG
TGCTCTAGAAAAACCCTCGGTTCAAGCTGTGATCTTGCGTCATCATTAGTTACTGTTCGA
GCATTGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACTACAAACGTATTATNAA
ACATAATTANCAAACAGTAAACACATAAATCATATA

consensusID : consensus_3682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [GATCCCCCGAGGTTAAAAAACCTCGTTCAATTGTTCTTGCTCATCATTATTTATGTTCGAGCATGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACACAAACGTATTATTAAAATAATAAAAACAGTAACAATAAATTATATACAGAAGTTTAACAGTGTTAATATATTAATGAAAAAATAAATAATTATTAATGAATAAGTTACACGCATTACATACGAGAATCGTACACCTCAATCGATACTAATCCTTTTATGTTATGTACCATGTCTATGGTTTACGAANACAATGATATAAATCCATTCAATGGCAAAGGTNTGGAAACCAAAACAAAGTAAGTAGTACGCTTGCCATTGGATTTGCATGGATCTTTATCATACCGCTTCTCGCTTTAACTGATCGTCATCTTCATTCTCGAGGCATCTGTCAAAGTTACAGCAACGGGTGGCTATGCGNCATTCCGTACTTCAGCCCACTCACGGCAAGCCGCTCATCCCTCAAACTTTACTTNACANCCTAGCANACACACTGCTTAACTATANATATCTANACATACTTGAACGCATTCCTGCACATTCTTAAACATTAACNNTAAACTTCCCCNCAACACTAAAGTTATACAATCGCTCNAGCTCAGGCGACCGTCTGGCACATTCGGACAGCTCCATGTAC]

[+] EMBL AL692451             [GATCCCCCGAGGTTAAAAAACCTCGTTCAATTGTTCTTGCTCATCATTATTTATGTTCGAGCATGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACACAAACGTATTATTAAAATAATAAAAACAGTAACAATAAATTATATACAGAAGTTTAACAGTGTTAATATATTAATGAAAAAATAAATAATTATTAATGAATAAGTTACACGCATTACATACGAGAATCGTACACCTCAATCGATACTAATCCTTTTATGTTATGTACCATGTCTATGGTTTACGAANACAATGATATAAATCCATTCAATGGCAAAGGTNTGGAAACCAAAACAAAGTAAGTAGTACGCTTGCCATTGGATTTGCATGGATCTTTATCATACCGCTTCTCGCTTTAACTGATCGTCATCTTCATTCTCGAGGCATCTGTCAAAGTTACAGCAACGGGTGGCTATGCGNCATTCCGTACTTCAGCCCACTCACGGCAAGCCGCTCATCCCTCAAACTTTACTTNACANCCTAGCANACACACTGCTTAACTATANATATCTANACATACTTGAACGCATTCCTGCACATTCTTAAACATTAACNNTAAACTTCCCCNCAACACTAAAGTTATACAATCGCTCNAGCTCAGGCGACCGTCTGGCACATTCGGACAGCTCCATGTAC]




>consensus_3682#1
GATCCCCCGAGGTTAAAAAACCTCGTTCAATTGTTCTTGCTCATCATTATTTATGTTCGA
GCATGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACACAAACGTATTATTAAAA
TAATAAAAACAGTAACAATAAATTATATACAGAAGTTTAACAGTGTTAATATATTAATGA
AAAAATAAATAATTATTAATGAATAAGTTACACGCATTACATACGAGAATCGTACACCTC
AATCGATACTAATCCTTTTATGTTATGTACCATGTCTATGGTTTACGAANACAATGATAT
AAATCCATTCAATGGCAAAGGTNTGGAAACCAAAACAAAGTAAGTAGTACGCTTGCCATT
GGATTTGCATGGATCTTTATCATACCGCTTCTCGCTTTAACTGATCGTCATCTTCATTCT
CGAGGCATCTGTCAAAGTTACAGCAACGGGTGGCTATGCGNCATTCCGTACTTCAGCCCA
CTCACGGCAAGCCGCTCATCCCTCAAACTTTACTTNACANCCTAGCANACACACTGCTTA
ACTATANATATCTANACATACTTGAACGCATTCCTGCACATTCTTAAACATTAACNNTAA
ACTTCCCCNCAACACTAAAGTTATACAATCGCTCNAGCTCAGGCGACCGTCTGGCACATT
CGGACAGCTCCATGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3682#0      --TTCATCAAAACTTAGAACACATTCTCGATCTTTGTTGCTAAATGTTGTGGCCGCGGTT 58
consensus_3682#1      GATCCCCCGAGGTTAAAAAACCTCGTTCAATTGTTCTTGCTCATCATTATTTATGTTCGA 60
                        * *  * *   * * **  *    ** **  ** ***** *   ** *    *     

consensus_3682#0      CCAACTAAATTCAAAACGTCTTCTAAGATGCCTTGCTTTAAGTTAATTTTTCGTCCATAC 118
consensus_3682#1      GCA-TGAAATTACAGATG------GAATTGCTTTAAACCGAAACA-CAACACAAACGTAT 112
                       **   *****  * * *       *  *** **      *   *      *   * ** 

consensus_3682#0      CTTTGTAA-GGTGGATGGAGCAGCCATAGGT-ACCTTCAAATCTTTTCCTACGTAACAAT 176
consensus_3682#1      TATTAAAATAATAAAAACAGTAACAATAAATTATATACAGAAGTTTAACAGTGTTAATAT 172
                        **  **   *  *   ** * * ***  * *  * ** *  ***  *   ** *  **

consensus_3682#0      ATGCCCGCGAACTAAAATATTTCAAGGTAAACGCCTTGCTAATTTCCTCTTTGGTCCATC 236
consensus_3682#1      ATTAATGAAAAAATAAATAATTATTAATGAATAAGTTACACGCATTACATACGAGA-ATC 231
                      **    *  **   ***** **     * **    ** *     *    *  *    ***

consensus_3682#0      GTACTCGCTTCTTGTGCTTATTAATCAAATCAATTTGATTGCTATCAGAGTG-TCTCCTA 295
consensus_3682#1      GTACACCTCAATCG---ATACTAATCCTTTTATGTTATGTACCATGTCTATGGTTTACGA 288
                      **** *     * *    ** *****   * *  **   * * **     ** * * * *

consensus_3682#0      ACATTTTCTTCATTATTGGAACTACATCTGAACTTTGGATGCTTTCTTTCTGAATGGTTT 355
consensus_3682#1      ANACAATGATATAAATCCATTCAATGGCAAAGGTNTGGAAACCAAAACAAAGTA-AGTAG 347
                      * *   *  *    **     * *   *  *  * ****  *         * *  **  

consensus_3682#0      CCAATTTTCTATTCCAAATTCACATTTNTGTTTCTTCTAACTGCTGTATTTTCTTGAACA 415
consensus_3682#1      TACGCTTGCCATT--GGATTTGCATGGATCTTTATCATA-CCGCT-TCTCGCTTTAACTG 403
                           ** * ***    ***  ***   * *** *  ** * *** * *    ** *   

consensus_3682#0      ACCGAATCCAAATGCTTTTTCAAATTATGGTTTGCTGCTTTCTAGCGTATTTTAGCCTCC 475
consensus_3682#1      ATCG---TCATCTTCATTCTCGAGGCAT--CTGTCAAAGTTACAGCAACGGGTGGCTATG 458
                      * **    **  * * ** ** *   **   *  *    **  ***      * **    

consensus_3682#0      TCTAGTTGAGCAGTTAAGGCAGAAATTCTCGCGAAGTTCTAACGGAATTCAATNTTGTTA 535
consensus_3682#1      CGNCATTCCGTACTTCAGCC---CACTCACGGCAAGC-CGCTCATCCCTCAAACTTTACT 514
                           **  * * ** ** *    * ** **  ***  *   *     ****  **    

consensus_3682#0      CATCTTTCNAATTCGCACATGGCACATTCTATATCTCACACGACTGACTATAGCTCATGT 595
consensus_3682#1      TNACANCCTAGCANACACACTGCTTAA-CTATANATATCTANACATACTTGAACGCATTC 573
                         *   * *     ****  **  *  *****  *  *   **  ***  * * ***  

consensus_3682#0      CGGCGTGCTCTAGAAAAACCCTCGGTTCAAGCTGTGATCTTGCGTCATCATTAGTTACTG 655
consensus_3682#1      CTGCACATTCTTAAACA---------TTAACNNTAAACTTCCCCNCAACACTAAA-GTTA 623
                      * **    ***  ** *         * **      *  *  *  ** ** **     * 

consensus_3682#0      TTCGAGCATTGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACTACAAACGTATT 715
consensus_3682#1      TACAATCGCTCNAGCT-CAGGCG--ACCGTCTGGCACATTCGGACAGCTCCATGTAC--- 677
                      * * * *  *  *  * ***  *  *  *  *   **      *** ** **        

consensus_3682#0      ATNAAACATAATTANCAAACAGTAAACACATAAATCATATA 756
consensus_3682#1      -----------------------------------------