These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1236 fasta sequence [CAAGAATCCCCCGNGGTTATGCTCGAATCACGTGTTTGGCGAACTTTAATGCGATACAGTTAATAGCAATCAATCTCTTAACCAGTTCTAGAATGTTTAGGATACTAGTTACACGATAAGCAAGCTATCTAGATATAGTACTACACAAAGCATGAATTATACACACACACACTCCCAGCCTATATTATATCTGTAACAAAACACAATATATACGTTGCATATATATTATAACAACCACCAGGATTCTTTGCAACACAAAAAGGGACACATTTTTGCCTCATTTAAATAGCCCCCACACATGGTTTATTAGCCCAGATCGGTATTAATAACCATTATTATTTATCTTTGGTTAATTGATTCCANTTTNTGGAACAACACTTTACAACAATTTGGACACGAACCAACTAACACAGCTGNGCCACAACAATTTANCTTAGGACAATTTGNGNCGGCGAGNGNTGCACGGCCGGACGTTACACAANACTTTAAACAACCGGTTGGTTAAAGTTAANGCCTTCGGAAAAGGACAAACATTACCCATTTGTTAAGAACACAGAGGCAGGTGGGTCTATATCCANAAATAACNGGTTCCACGGGAGCGGAACAGGGGTGGAACCCGNGGACGCTTACGCGTTAACTTGGAACCTTTGGAAACACATTTAACACGGAAAAGGAAATAAGCAAGAAACACCCCACAAGGAACCACACACAACAACCACGCGCAAGGACATTACACCNACAGGGACAGGCTTTTGGCACACACCAGGTGGGGGAATTTAACCGCGGACCAAGAGGGACTTCCCCGGCTTGGACCGGNAATTGGGAATTCCTTTATACTNACTTTTGGAACTTTAAGACACCACANCAAGGTTATAAAGCTNACACATAGNCGACTTTGGNGTTCCTTAACACCACCCTTCTATTCCCCGGTNGAAGCTACACCACACCTTTGGGTAACCAGACGCNTTNAATTCTCAANAACGCCCTGGGCAAACAGGCTTNAACATCNTTGGGCCAAAAAAAGCACAAGTCAAANCCAAANCTGGGCTGGCNTCCCCATACAACAATNCTCTCGCAGNAGTCAACAGGNGGTGGTTACGGCACCNACTTTGGTCATTACACTAACCAACNCCCAAGANACAGGAAAACACCAGCANTAATTAATCCGGGCATTATTAAACTCCATCGGTCTAANCACTTTGGCATGCCCCAACAGAACCCCCAAACAACAATCTC] [+] EMBL AL692460 [CAAGAATCCCCCGNGGTTATGCTCGAATCACGTGTTTGGCGAACTTTAATGCGATACAGTTAATAGCAATCAATCTCTTAACCAGTTCTAGAATGTTTAGGATACTAGTTACACGATAAGCAAGCTATCTAGATATAGTACTACACAAAGCATGAATTATACACACACACACTCCCAGCCTATATTATATCTGTAACAAAACACAATATATACGTTGCATATATATTATAACAACCACCAGGATTCTTTGCAACACAAAAAGGGACACATTTTTGCCTCATTTAAATAGCCCCCACACATGGTTTATTAGCCCAGATCGGTATTAATAACCATTATTATTTATCTTTGGTTAATTGATTCCANTTTNTGGAACAACACTTTACAACAATTTGGACACGAACCAACTAACACAGCTGNGCCACAACAATTTANCTTAGGACAATTTGNGNCGGCGAGNGNTGCACGGCCGGACGTTACACAANACTTTAAACAACCGGTTGGTTAAAGTTAANGCCTTCGGAAAAGGACAAACATTACCCATTTGTTAAGAACACAGAGGCAGGTGGGTCTATATCCANAAATAACNGGTTCCACGGGAGCGGAACAGGGGTGGAACCCGNGGACGCTTACGCGTTAACTTGGAACCTTTGGAAACACATTTAACACGGAAAAGGAAATAAGCAAGAAACACCCCACAAGGAACCACACACAACAACCACGCGCAAGGACATTACACCNACAGGGACAGGCTTTTGGCACACACCAGGTGGGGGAATTTAACCGCGGACCAAGAGGGACTTCCCCGGCTTGGACCGGNAATTGGGAATTCCTTTATACTNACTTTTGGAACTTTAAGACACCACANCAAGGTTATAAAGCTNACACATAGNCGACTTTGGNGTTCCTTAACACCACCCTTCTATTCCCCGGTNGAAGCTACACCACACCTTTGGGTAACCAGACGCNTTNAATTCTCAANAACGCCCTGGGCAAACAGGCTTNAACATCNTTGGGCCAAAAAAAGCACAAGTCAAANCCAAANCTGGGCTGGCNTCCCCATACAACAATNCTCTCGCAGNAGTCAACAGGNGGTGGTTACGGCACCNACTTTGGTCATTACACTAACCAACNCCCAAGANACAGGAAAACACCAGCANTAATTAATCCGGGCATTATTAAACTCCATCGGTCTAANCACTTTGGCATGCCCCAACAGAACCCCCAAACAACAATCTC] consensusID : consensus_3684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 822 fasta sequence [GAATCGCCCCAGGTTTAAATTGCCCTATATATAGTTTTAACGTTAGGTTGAGATCGCTTATAATACTTTCTATGTAAAATGAATATTCCGCTTATGTGTATTACAAAAAAACAGAAAATACTGCGCTATATTTTGCTTATATGTATGCTCGAATCACGTGTTTTGGCGAACCTTTAGTGCGATACAGTTAATGCAATCAATCTCTTAACCAGTTCTGAATGTTTAGGATACTGTTACACGATAAGCAAGCTTCTGATATGTACTCACAAAGCCATGAATTATACACACACACACTCCCAGCCTATATTATTCTGTAACAAAACACAATATATACGTGCATATATATATACACACAGATCTTGCAACAAAACGGAAATTTTGCTATTAATAGCCCCACAATGTTATGCCAGTCGTATATACATCTATTCTTGTATGATCATTTGANACATCAAATGAAACCANCAAGGCAACATACATGANTGCGCGGGGGCAGCNGAGTACANACTAACACGTGTAGTACCTGAANGAANTCATTNACGAAGANGTCTCCCAATCGTCCGNCGGGACAGGGACCGAGAGGTACTGACCTGACAACTAACGACCGAAANNAANCNAGACCAAAAAACACCAGAAGAATAACCANGAGTNTGANAACACGGGCGACATNACGCGCAACAGGAATCGGTGCGAATTGATCCTCTCATCANNTGACTACGACCAACANAGTAAACTAACTACNCATGGCTCCTACACAACCTTACTCCCGCNACNCTCAACATTGTNACAACACCATTNCAAAGACATTGCGAACAAGCTACATNG] [+] EMBL AL697486 [GAATCGCCCCAGGTTTAAATTGCCCTATATATAGTTTTAACGTTAGGTTGAGATCGCTTATAATACTTTCTATGTAAAATGAATATTCCGCTTATGTGTATTACAAAAAAACAGAAAATACTGCGCTATATTTTGCTTATATGTATGCTCGAATCACGTGTTTTGGCGAACCTTTAGTGCGATACAGTTAATGCAATCAATCTCTTAACCAGTTCTGAATGTTTAGGATACTGTTACACGATAAGCAAGCTTCTGATATGTACTCACAAAGCCATGAATTATACACACACACACTCCCAGCCTATATTATTCTGTAACAAAACACAATATATACGTGCATATATATATACACACAGATCTTGCAACAAAACGGAAATTTTGCTATTAATAGCCCCACAATGTTATGCCAGTCGTATATACATCTATTCTTGTATGATCATTTGANACATCAAATGAAACCANCAAGGCAACATACATGANTGCGCGGGGGCAGCNGAGTACANACTAACACGTGTAGTACCTGAANGAANTCATTNACGAAGANGTCTCCCAATCGTCCGNCGGGACAGGGACCGAGAGGTACTGACCTGACAACTAACGACCGAAANNAANCNAGACCAAAAAACACCAGAAGAATAACCANGAGTNTGANAACACGGGCGACATNACGCGCAACAGGAATCGGTGCGAATTGATCCTCTCATCANNTGACTACGACCAACANAGTAAACTAACTACNCATGGCTCCTACACAACCTTACTCCCGCNACNCTCAACATTGTNACAACACCATTNCAAAGACATTGCGAACAAGCTACATNG] consensusID : consensus_3684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [ATCATAAAACATCCATAACAAATTCCAAAGCATAATTGTTACCGACAAATACGTATAACACACATTAAAGGCTTCATTTTGTGGTTGTTCGGGCAATAGGCCTAGGAAAATGCAATCATATGTAAGATCATTAAGTCATTTTATTTACTAACCTTTTCGGTTCGCTTCGTTGTATAAGTTAGTTATTATTTATCTACTTCTAGTCAATGATGAGGGTTTACGTACGATGCGCGTTCTGTTATAAACAATACGATATGTGATTTAAAAAATTGCCCTATATATAGTTTTAACGTTAGGTTGAGATCGCTTATAATACTTTCTATGTAAAATGAATATTCCGCTTATGTGTATTACAAAAAAACAGAAAATACTGCGCTATATTTTGCTTATATGTATGCTCGAATCACGTGTTTGGCGAACCTTTAGTGCGATACAGTTAATGCAATCAATCTCTTAACCAGTTCTGAATGTTTAGGATACTGTTACACGATAAGCAAGCTTCTGATATGTACTCACAAAGCATGAATTATACACACACACACTCCCAGCCTATATTATTCTGTAACAAAACACAATATATACGTGCATATATATATACACACAGATCTTGAAAAAAAGGAAATTTTGCTATTAATAGCCCCAC] [+] EMBL BX618932 [ATCATAAAACATCCATAACAAATTCCAAAGCATAATTGTTACCGACAAATACGTATAACACACATTAAAGGCTTCATTTTGTGGTTGTTCGGGCAATAGGCCTAGGAAAATGCAATCATATGTAAGATCATTAAGTCATTTTATTTACTAACCTTTTCGGTTCGCTTCGTTGTATAAGTTAGTTATTATTTATCTACTTCTAGTCAATGATGAGGGTTTACGTACGATGCGCGTTCTGTTATAAACAATACGATATGTGATTTAAAAAATTGCCCTATATATAGTTTTAACGTTAGGTTGAGATCGCTTATAATACTTTCTATGTAAAATGAATATTCCGCTTATGTGTATTACAAAAAAACAGAAAATACTGCGCTATATTTTGCTTATATGTATGCTCGAATCACGTGTTTGGCGAACCTTTAGTGCGATACAGTTAATGCAATCAATCTCTTAACCAGTTCTGAATGTTTAGGATACTGTTACACGATAAGCAAGCTTCTGATATGTACTCACAAAGCATGAATTATACACACACACACTCCCAGCCTATATTATTCTGTAACAAAACACAATATATACGTGCATATATATATACACACAGATCTTGAAAAAAAGGAAATTTTGCTATTAATAGCCCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3684#1 ------------------------------------------------------------ consensus_3684#2 ---------------------ATCATAAAACATCCATAACAAATTCCAAAGC---ATAAT 36 consensus_3684#0 CAAGAATCCCCCGNGGTTATGCTCGAATCACGTGTTTGGCGAACTTTAATGCGATACAGT 60 consensus_3684#1 ------------------------------------------------------------ consensus_3684#2 TGTTACCGACAAATACGTATAACACACATTAAAGGCTTCATTTTGTGGTTGTTCGGGCAA 96 consensus_3684#0 TAATAGCAATCAATCTCTTAACCAGTTCTAGAATGTTTAGGATACTAGTTACACGATAAG 120 consensus_3684#1 ------------------------------------------------------------ consensus_3684#2 TAGGCCTAGGAAAATGCAATCATATGTAAGATCATTAAGTCATTTTATTTACTAACCTTT 156 consensus_3684#0 CAAGC-TATCTAGATATAGTACTACACAA-AGCATGAA----TTATACACACACACACTC 174 consensus_3684#1 ------------------------------------------------------------ consensus_3684#2 TCGGTTCGCTTCGTTGTATAAGTTAGTTATTATTTATCTACTTCTAGTCAATGATGAGGG 216 consensus_3684#0 CCAGCCTATATTATATCTGTAACAAAACACAATATATACGTTGCATATATATTATAACAA 234 consensus_3684#1 ---------------------------------GAATCGCCCCAGGTTTAAA---TTGCC 24 consensus_3684#2 TTTAC-GTACGATGCGCGTT-CTGTTATAAACAATACGATATGTGATTTAAAAAATTGCC 274 consensus_3684#0 CCACCAGGATTCTTTGCAACACAAAAAGGGACACATTTTTGCCTCATTTAAATA--GCCC 292 ****** ** consensus_3684#1 CTATATATAGTTT-TAACGTTAGGTTGAGATCGCTTATAAT-ACTTTCTATGTAAAATGA 82 consensus_3684#2 CTATATATAGTTT-TAACGTTAGGTTGAGATCGCTTATAAT-ACTTTCTATGTAAAATGA 332 consensus_3684#0 CCACACATGGTTTATTAGCCCAGATCGGTATTAATAACCATTATTATTTATCTTTGGTTA 352 * * * ** **** * * ** * * ** * * ** * * * *** * * * consensus_3684#1 AT--ATTCCGCTTATGTGTA-------TTACAAAAAAACAGAAAATACTGCGCTA----- 128 consensus_3684#2 AT--ATTCCGCTTATGTGTA-------TTACAAAAAAACAGAAAATACTGCGCTA----- 378 consensus_3684#0 ATTGATTCCANTTTNTGGAACAACACTTTACAACAATTTGGACACGAACCAACTAACACA 412 ** ***** ** * * ****** ** ** * * *** consensus_3684#1 --TATTTTGCTTATATGTATGCTCGAATCACGTGTTTTGGCGAACCTTTAGTGCGATACA 186 consensus_3684#2 --TATTTTGCTTATATGTATGCTCGAATCACGTGTTT-GGCGAACCTTTAGTGCGATACA 435 consensus_3684#0 GCTGNGCCACAACAATTTANCTTAGGACAATTTGNGNCGGCGAGNGNTGCACG-GCCGGA 471 * * ** ** * * * * ** ***** * * * * consensus_3684#1 GTTAATGCAATCAATCTCTTAACCAGTTC-TGAATGTTTAGGATACTGTTACACGATAAG 245 consensus_3684#2 GTTAATGCAATCAATCTCTTAACCAGTTC-TGAATGTTTAGGATACTGTTACACGATAAG 494 consensus_3684#0 CGTTACACAANACTTTAAACAACCGGTTGGTTAAAGTTAANGCCTTCGGAAAAGGACAAA 531 * * *** * **** *** * ** *** * * * * * ** ** consensus_3684#1 CAAG---CTTCTGATATGTACTCACAAAGCCATGAAT-TATACACACACACACTC---CC 298 consensus_3684#2 CAAG---CTTCTGATATGTACTCACAAAGC-ATGAAT-TATACACACACACACTC---CC 546 consensus_3684#0 CATTACCCATTTGTTAAGAACACAGAGGCAGGTGGGTCTATATCCANAAATAACNGGTTC 591 ** * * ** ** * ** ** * ** * **** ** * * * * consensus_3684#1 AGCCTATATTATTCTGTAACAAAACACAA---TATATACGTGCATATATATA-----TAC 350 consensus_3684#2 AGCCTATATTATTCTGTAACAAAACACAA---TATATACGTGCATATATATA-----TAC 598 consensus_3684#0 CACGGGAGCGGAACAGGGGTGGAACCCGNGGACGCTTACGCGTTAACTTGGAACCTTTGG 651 * * * *** * **** * * * * * consensus_3684#1 ACACAGATCTTGCAACAAAACGGAAATTTTGCTATTAATAGCCCCACAATGTTATGCCAG 410 consensus_3684#2 ACACAGATCTTGAAAAAAA--GGAAATTTTGCTATTAATAGCCCCAC------------- 643 consensus_3684#0 AAACACATTTAACACGGAAAAGGAAATAA-GCAAGAAACA-CCCCACAAGGAACCACACA 709 * *** ** * * ** ****** ** * ** * ****** consensus_3684#1 TCGTATATACATCTATTCTTGTATGATCATTTGANACATCAAATGAAACCANCAAGGCAA 470 consensus_3684#2 ------------------------------------------------------------ consensus_3684#0 CAACAACCACGCGCAAGGACATTACACCNACAGGGACAGGCTTTTGGCACACACCAGGTG 769 consensus_3684#1 CATACATGANTGCGCGGGGGCAGCNGAGTACANACTAACACGTGTAGTACCTGAANGAAN 530 consensus_3684#2 ------------------------------------------------------------ consensus_3684#0 GGGGAATTTAACCGCGGACCAAGAGGGACTTCCCCGGCTTGGACCGGNAATTGGGAATTC 829 consensus_3684#1 TCATTNACGAAGANGTCTCCCAATCGTCCGNCGGGACAGGGACCGAGAGGTACTGACCTG 590 consensus_3684#2 ------------------------------------------------------------ consensus_3684#0 CTTTATACTNACTTTTGGAACTTTAAGACACCACANCAAGGTTATAAAGCTNACACATAG 889 consensus_3684#1 ACAACTAACGACCGAAANNAANCNAGACCAAAAAACACCAGAAGAATAACCANGAG---- 646 consensus_3684#2 ------------------------------------------------------------ consensus_3684#0 NCGACTTTGGNGTTCCTTAACACCACCCTTCTATTCCCCGGTNGAAGCTACACCACACCT 949 consensus_3684#1 TNTGANAACACGGGCGACATNACGCGCAACAGGAATCGGTGCGAATTGATCCTCTCATCA 706 consensus_3684#2 ------------------------------------------------------------ consensus_3684#0 TTGGGTAACCAGACGCNTTNAATTCTCAANAACGCCCTGGGCAAACAGGCTTNAACATCN 1009 consensus_3684#1 NNTGACTACGACCAACANAGTAAACTAACTACNCATGGCT------CCTACACAACCTTA 760 consensus_3684#2 ------------------------------------------------------------ consensus_3684#0 TTGGGCCAAAAAAAGCACAAGTCAAANCCAAANCTGGGCTGGCNTCCCCATACAACAATN 1069 consensus_3684#1 CTCCCGCNACNCTCAACATTGTNACAACACCATTNCAAAGACATTGCGAACAAGCTACAT 820 consensus_3684#2 ------------------------------------------------------------ consensus_3684#0 CTCTCGCAGNAGTCAACAGGNGGTGGTTACGGCACCNACTTTGGTCATTACACTAACCAA 1129 consensus_3684#1 NG---------------------------------------------------------- 822 consensus_3684#2 ------------------------------------------------------------ consensus_3684#0 CNCCCAAGANACAGGAAAACACCAGCANTAATTAATCCGGGCATTATTAAACTCCATCGG 1189 consensus_3684#1 ----------------------------------------------- consensus_3684#2 ----------------------------------------------- consensus_3684#0 TCTAANCACTTTGGCATGCCCCAACAGAACCCCCAAACAACAATCTC 1236 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||