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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1047 fasta sequence
[TTCATTCGTTTCTCAAATTTTTAACGCATTACTAGCTTATTTAGACTTATGGCAATTTGTATTAGTAAGAAAACACTCGCAAGTCATGCCAAGAATGTGCAGTTGGGAAGAATTGAGTGAGCAAGCGTACCTTCTGAACCATGCCAGCAGTGTGGAAAATGTTTACAGCAGCAGTTTTCTGGATAAAAACGTACAGAAAGCATGTTTGAACAGAGTTCTTTTCGATATCAACGTGCCTTACGATAAGAGAGACGACAAGGGAGAAAATGCCAAGAAAAGGAAACGGATTAAAACGACAGGACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAATCATTCTTCCATTCAGCACAAACTACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCACTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAACCGTACCATCATCACGGAAATGGACGGTGAAAGTTTTCTCATACCCCCACGGGTAGCGTTCATCAACTCTTCCATCGACCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACATGATCGTGCTCGATCCACCGTGGT-GAACAAATACATCAGGCGCGTGAAAGCCGTCAACGCCAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCATCGGCACGAAAATACGCTCGTGGTTGTATGGTGCACGAACGCACCGTCTCACATCGATGCGGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGCTTGCTGGTACTGGGTCAAGATTACGGGCAGCAGCGGTCAGCCGGTGTGCAAATTTAACGAACCGACGCAAAAACAACCATACGAGCGGATCTTTATCGGCTTACCGAAGGAATCGCCGATGGCCCGAACATTCCCAAGCGAACGGTTCCTGTACTCGGTACCGTGTGCAATACATTCGCACAAACCACCACTGTACGGTATGTTTCTTTCAGAGAATTAAAAG]
[+] EMBL CNS09HV4 [TTCATTCGTTTCTCAAATTTTTAACGCATTACTAGCTTATTTAGACTTATGGCAATTTGTATTAGTAAGAAAACACTCGCAAGTCATGCCAAGAATGTGCAGTTGGGAAGAATTGAGTGAGCAAGCGTACCTTCTGAACCATGCCAGCAGTGTGGAAAATGTTTACAGCAGCAGTTTTCTGGATAAAAACGTACAGAAAGCATGTTTGAACAGAGTTCTTTTCGATATCAACGTGCCTTACGATAAGAGAGACGACAAGGGAGAAAATGCCAAGAAAAGGAAACGGATTAAAACGACAGGACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAATCATTCTTCCATTCAGCACAAACTACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCACTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAACCGTACCATCATCACGGAAATGGACGGTGAAAGTTTTCTCATACCCCCACGGGTAGCGTTCATCAACTCTTCCATCGACCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACATGATCGTGCTCGATCCACCGTGGT GAACAAATACATCAGGCGCGTGAAAGCCGTCAACGCCAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCATCGGCACGAAAATACGCTCGTGGTTGTATGGTGCACGAACGCACCGTCTCACATCGATGCGGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGCTTGCTGGTACTGGGTCAAGATTACGGGCAGCAGCGGTCAGCCGGTGTGCAAATTTAACGAACCGACGCAAAAACAACCATACGAGCGGATCTTTATCGGCTTACCGAAGGAATCGCCGATGGCCCGAACATTCCCAAGCGAACGGTTCCTGTACTCGGTACCGTGTGCAATACATTCGCACAAA ]
[-] EMBL CNS09HV5 [ CATGTTTGAACAGAGTTCTTTTCGATATCAACGTGCCTTACGATAAGAGAGACGACAAGGGAGAAAATGCCAAGAAAAGGAAACGGATTAAAACGACAGGACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAATCATTCTTCCATTCAGCACAAACTACCAACCAGGGGGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCACTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAACCGTACCATCATCACGGAAATGGACGGTGAAAGTTTTCTCATACCCCCACGGGTAGCGTTCATCAACTCTTCCATCGACCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACATGATCGTGCTCGATCCACCGTGGTGGAACAAATACTTAAGGCGCGTGAAAGCCGTCAACGCCAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCATCGGCACGAAAATACGCTCGTGGTTGTATGGTGCACGAACGCACCGTCTAACATCGATGCGGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGCTTGCTGGTACTGGGTCAAGATTACGGGCAGCAGCGGTCAGCCGGTGTGCAAATTTAACGAACCGACGCAAAAACAACCATACGAGCGGATCTTTATCGGCTTACCGAAGGGATCGCCGATGGCCCGAACATTCCCAAGCGAACGGTTCCTGTACTCGGTACCGTGTGCAATAAATTCGCACAAACCACCACTGTACGGTATGTTTCTTTCAGAGAATTAAAAG]
consensusID : consensus_3686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence
[CCGCGGACGCGTGGGGAAACGGATTAAAACGACAGGACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAACCATTCTTCCATCCAACACAAACTACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCACTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAACCATATCATCGTCACGGAAATGGACGGTGAAAGTTTTCTCATTCCTCCACGGGTAGCGTTCATCAACTCTTCCATCGATCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACCTGATCGTGCTCGATCCACCGTGGTGGAACAAATACATCAGGCGCGTGAAAGCCGTCAACGCCAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCATCGGCACGAAAATACGCTCGTGGTGGTGTGGTGCACGAACGCACCGTCTCATATCGATGCGGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGGTTGCTGGTACTGGGTCAAGATTACGGCCAGCAGCGGTCAGCCGATGTGCAAATTTAACGAACCGGCCCAAAAACAACCATACGAGCGGATCTTTATCGGCTTACCGCAGAGGTCGCCGATGGCCCGAACATTCCCAAGCGAACGGTTCCT]
[+] EMBL BM609438 [CCGCGGACGCGTGGGGAAACGGATTAAAACGACAGGACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAACCATTCTTCCATCCAACACAAACTACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCACTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAACCATATCATCGTCACGGAAATGGACGGTGAAAGTTTTCTCATTCCTCCACGGGTAGCGTTCATCAACTCTTCCATCGATCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACCTGATCGTGCTCGATCCACCGTGGTGGAACAAATACATCAGGCGCGTGAAAGCCGTCAACGCCAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCATCGGCACGAAAATACGCTCGTGGTGGTGTGGTGCACGAACGCACCGTCTCATATCGATGCGGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGGTTGCTGGTACTGGGTCAAGATTACGGCCAGCAGCGGTCAGCCGATGTGCAAATTTAACGAACCGGCCCAAAAACAACCATACGAGCGGATCTTTATCGGCTTACCGCAGAGGTCGCCGATGGCCCGAACATTCCCAAGCGAACGGTTCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3686#0 TTCATTCGTTTCTCAAATTTTTAACGCATTACTAGCTTATTTAGACTTATGGCAATTTGT 60
consensus_3686#1 ------------------------------------------------------------
consensus_3686#0 ATTAGTAAGAAAACACTCGCAAGTCATGCCAAGAATGTGCAGTTGGGAAGAATTGAGTGA 120
consensus_3686#1 ------------------------------------------------------------
consensus_3686#0 GCAAGCGTACCTTCTGAACCATGCCAGCAGTGTGGAAAATGTTTACAGCAGCAGTTTTCT 180
consensus_3686#1 ------------------------------------------------------------
consensus_3686#0 GGATAAAAACGTACAGAAAGCATGTTTGAACAGAGTTCTTTTCGATATCAACGTGCCTTA 240
consensus_3686#1 ------------------------------------------------------------
consensus_3686#0 CGATAAGAGAGACGACAAGGGAGAAAATGCCAAGAAAAGGAAACGGATTAAAACGACAGG 300
consensus_3686#1 --------------------CCGCGGACGC----GTGGGGAAACGGATTAAAACGACAGG 36
* * ** **********************
consensus_3686#0 ACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAATCATTCTTCCATTCAGCACAAACT 360
consensus_3686#1 ACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAACCATTCTTCCATCCAACACAAACT 96
************************************ *********** ** ********
consensus_3686#0 ACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCA 420
consensus_3686#1 ACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCA 156
************************************************************
consensus_3686#0 CTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAA 480
consensus_3686#1 CTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAA 216
************************************************************
consensus_3686#0 CCGTACCATCATCACGGAAATGGACGGTGAAAGTTTTCTCATACCCCCACGGGTAGCGTT 540
consensus_3686#1 CCATATCATCGTCACGGAAATGGACGGTGAAAGTTTTCTCATTCCTCCACGGGTAGCGTT 276
** ** **** ******************************* ** **************
consensus_3686#0 CATCAACTCTTCCATCGACCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACAT 600
consensus_3686#1 CATCAACTCTTCCATCGATCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACCT 336
****************** *************************************** *
consensus_3686#0 GATCGTGCTCGATCCACCGTGGTG-AACAAATACATCAGGCGCGTGAAAGCCGTCAACGC 659
consensus_3686#1 GATCGTGCTCGATCCACCGTGGTGGAACAAATACATCAGGCGCGTGAAAGCCGTCAACGC 396
************************ ***********************************
consensus_3686#0 CAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCA 719
consensus_3686#1 CAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCA 456
************************************************************
consensus_3686#0 TCGGCACGAAAATACGCTCGTGGTTGTATGGTGCACGAACGCACCGTCTCACATCGATGC 779
consensus_3686#1 TCGGCACGAAAATACGCTCGTGGTGGTGTGGTGCACGAACGCACCGTCTCATATCGATGC 516
************************ ** *********************** ********
consensus_3686#0 GGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGCTTGCTGGTACTGGGT 839
consensus_3686#1 GGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGGTTGCTGGTACTGGGT 576
******************************************** ***************
consensus_3686#0 CAAGATTACGGGCAGCAGCGGTCAGCCGGTGTGCAAATTTAACGAACCGACGCAAAAACA 899
consensus_3686#1 CAAGATTACGGCCAGCAGCGGTCAGCCGATGTGCAAATTTAACGAACCGGCCCAAAAACA 636
*********** **************** ******************** * ********
consensus_3686#0 ACCATACGAGCGGATCTTTATCGGCTTACCGAAGGAATCGCCGATGGCCCGAACATTCCC 959
consensus_3686#1 ACCATACGAGCGGATCTTTATCGGCTTACCGCAGAGGTCGCCGATGGCCCGAACATTCCC 696
******************************* ** ***********************
consensus_3686#0 AAGCGAACGGTTCCTGTACTCGGTACCGTGTGCAATACATTCGCACAAACCACCACTGTA 1019
consensus_3686#1 AAGCGAACGGTTCCT--------------------------------------------- 711
***************
consensus_3686#0 CGGTATGTTTCTTTCAGAGAATTAAAAG 1047
consensus_3686#1 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||