These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1047 fasta sequence [TTCATTCGTTTCTCAAATTTTTAACGCATTACTAGCTTATTTAGACTTATGGCAATTTGTATTAGTAAGAAAACACTCGCAAGTCATGCCAAGAATGTGCAGTTGGGAAGAATTGAGTGAGCAAGCGTACCTTCTGAACCATGCCAGCAGTGTGGAAAATGTTTACAGCAGCAGTTTTCTGGATAAAAACGTACAGAAAGCATGTTTGAACAGAGTTCTTTTCGATATCAACGTGCCTTACGATAAGAGAGACGACAAGGGAGAAAATGCCAAGAAAAGGAAACGGATTAAAACGACAGGACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAATCATTCTTCCATTCAGCACAAACTACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCACTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAACCGTACCATCATCACGGAAATGGACGGTGAAAGTTTTCTCATACCCCCACGGGTAGCGTTCATCAACTCTTCCATCGACCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACATGATCGTGCTCGATCCACCGTGGT-GAACAAATACATCAGGCGCGTGAAAGCCGTCAACGCCAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCATCGGCACGAAAATACGCTCGTGGTTGTATGGTGCACGAACGCACCGTCTCACATCGATGCGGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGCTTGCTGGTACTGGGTCAAGATTACGGGCAGCAGCGGTCAGCCGGTGTGCAAATTTAACGAACCGACGCAAAAACAACCATACGAGCGGATCTTTATCGGCTTACCGAAGGAATCGCCGATGGCCCGAACATTCCCAAGCGAACGGTTCCTGTACTCGGTACCGTGTGCAATACATTCGCACAAACCACCACTGTACGGTATGTTTCTTTCAGAGAATTAAAAG] [+] EMBL CNS09HV4 [TTCATTCGTTTCTCAAATTTTTAACGCATTACTAGCTTATTTAGACTTATGGCAATTTGTATTAGTAAGAAAACACTCGCAAGTCATGCCAAGAATGTGCAGTTGGGAAGAATTGAGTGAGCAAGCGTACCTTCTGAACCATGCCAGCAGTGTGGAAAATGTTTACAGCAGCAGTTTTCTGGATAAAAACGTACAGAAAGCATGTTTGAACAGAGTTCTTTTCGATATCAACGTGCCTTACGATAAGAGAGACGACAAGGGAGAAAATGCCAAGAAAAGGAAACGGATTAAAACGACAGGACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAATCATTCTTCCATTCAGCACAAACTACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCACTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAACCGTACCATCATCACGGAAATGGACGGTGAAAGTTTTCTCATACCCCCACGGGTAGCGTTCATCAACTCTTCCATCGACCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACATGATCGTGCTCGATCCACCGTGGT GAACAAATACATCAGGCGCGTGAAAGCCGTCAACGCCAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCATCGGCACGAAAATACGCTCGTGGTTGTATGGTGCACGAACGCACCGTCTCACATCGATGCGGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGCTTGCTGGTACTGGGTCAAGATTACGGGCAGCAGCGGTCAGCCGGTGTGCAAATTTAACGAACCGACGCAAAAACAACCATACGAGCGGATCTTTATCGGCTTACCGAAGGAATCGCCGATGGCCCGAACATTCCCAAGCGAACGGTTCCTGTACTCGGTACCGTGTGCAATACATTCGCACAAA ] [-] EMBL CNS09HV5 [ CATGTTTGAACAGAGTTCTTTTCGATATCAACGTGCCTTACGATAAGAGAGACGACAAGGGAGAAAATGCCAAGAAAAGGAAACGGATTAAAACGACAGGACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAATCATTCTTCCATTCAGCACAAACTACCAACCAGGGGGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCACTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAACCGTACCATCATCACGGAAATGGACGGTGAAAGTTTTCTCATACCCCCACGGGTAGCGTTCATCAACTCTTCCATCGACCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACATGATCGTGCTCGATCCACCGTGGTGGAACAAATACTTAAGGCGCGTGAAAGCCGTCAACGCCAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCATCGGCACGAAAATACGCTCGTGGTTGTATGGTGCACGAACGCACCGTCTAACATCGATGCGGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGCTTGCTGGTACTGGGTCAAGATTACGGGCAGCAGCGGTCAGCCGGTGTGCAAATTTAACGAACCGACGCAAAAACAACCATACGAGCGGATCTTTATCGGCTTACCGAAGGGATCGCCGATGGCCCGAACATTCCCAAGCGAACGGTTCCTGTACTCGGTACCGTGTGCAATAAATTCGCACAAACCACCACTGTACGGTATGTTTCTTTCAGAGAATTAAAAG] consensusID : consensus_3686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [CCGCGGACGCGTGGGGAAACGGATTAAAACGACAGGACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAACCATTCTTCCATCCAACACAAACTACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCACTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAACCATATCATCGTCACGGAAATGGACGGTGAAAGTTTTCTCATTCCTCCACGGGTAGCGTTCATCAACTCTTCCATCGATCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACCTGATCGTGCTCGATCCACCGTGGTGGAACAAATACATCAGGCGCGTGAAAGCCGTCAACGCCAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCATCGGCACGAAAATACGCTCGTGGTGGTGTGGTGCACGAACGCACCGTCTCATATCGATGCGGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGGTTGCTGGTACTGGGTCAAGATTACGGCCAGCAGCGGTCAGCCGATGTGCAAATTTAACGAACCGGCCCAAAAACAACCATACGAGCGGATCTTTATCGGCTTACCGCAGAGGTCGCCGATGGCCCGAACATTCCCAAGCGAACGGTTCCT] [+] EMBL BM609438 [CCGCGGACGCGTGGGGAAACGGATTAAAACGACAGGACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAACCATTCTTCCATCCAACACAAACTACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCACTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAACCATATCATCGTCACGGAAATGGACGGTGAAAGTTTTCTCATTCCTCCACGGGTAGCGTTCATCAACTCTTCCATCGATCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACCTGATCGTGCTCGATCCACCGTGGTGGAACAAATACATCAGGCGCGTGAAAGCCGTCAACGCCAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCATCGGCACGAAAATACGCTCGTGGTGGTGTGGTGCACGAACGCACCGTCTCATATCGATGCGGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGGTTGCTGGTACTGGGTCAAGATTACGGCCAGCAGCGGTCAGCCGATGTGCAAATTTAACGAACCGGCCCAAAAACAACCATACGAGCGGATCTTTATCGGCTTACCGCAGAGGTCGCCGATGGCCCGAACATTCCCAAGCGAACGGTTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3686#0 TTCATTCGTTTCTCAAATTTTTAACGCATTACTAGCTTATTTAGACTTATGGCAATTTGT 60 consensus_3686#1 ------------------------------------------------------------ consensus_3686#0 ATTAGTAAGAAAACACTCGCAAGTCATGCCAAGAATGTGCAGTTGGGAAGAATTGAGTGA 120 consensus_3686#1 ------------------------------------------------------------ consensus_3686#0 GCAAGCGTACCTTCTGAACCATGCCAGCAGTGTGGAAAATGTTTACAGCAGCAGTTTTCT 180 consensus_3686#1 ------------------------------------------------------------ consensus_3686#0 GGATAAAAACGTACAGAAAGCATGTTTGAACAGAGTTCTTTTCGATATCAACGTGCCTTA 240 consensus_3686#1 ------------------------------------------------------------ consensus_3686#0 CGATAAGAGAGACGACAAGGGAGAAAATGCCAAGAAAAGGAAACGGATTAAAACGACAGG 300 consensus_3686#1 --------------------CCGCGGACGC----GTGGGGAAACGGATTAAAACGACAGG 36 * * ** ********************** consensus_3686#0 ACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAATCATTCTTCCATTCAGCACAAACT 360 consensus_3686#1 ACCGTTCGACGAGACCACTCAAAAGGTGTTTGAAAACCATTCTTCCATCCAACACAAACT 96 ************************************ *********** ** ******** consensus_3686#0 ACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCA 420 consensus_3686#1 ACCAACCAGAGCGCACCAAAGCGCCACAAACAACAAAGAAGCGCTCGAATTTGTTGACCA 156 ************************************************************ consensus_3686#0 CTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAA 480 consensus_3686#1 CTTTAACACCTCCTCGCAGTACGATGCCGATCGACGGTTTCGCGGACAAAACAGTACGAA 216 ************************************************************ consensus_3686#0 CCGTACCATCATCACGGAAATGGACGGTGAAAGTTTTCTCATACCCCCACGGGTAGCGTT 540 consensus_3686#1 CCATATCATCGTCACGGAAATGGACGGTGAAAGTTTTCTCATTCCTCCACGGGTAGCGTT 276 ** ** **** ******************************* ** ************** consensus_3686#0 CATCAACTCTTCCATCGACCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACAT 600 consensus_3686#1 CATCAACTCTTCCATCGATCGGTTCGAAGAATATATCGGCCGGGATGAAAAGTTTGACCT 336 ****************** *************************************** * consensus_3686#0 GATCGTGCTCGATCCACCGTGGTG-AACAAATACATCAGGCGCGTGAAAGCCGTCAACGC 659 consensus_3686#1 GATCGTGCTCGATCCACCGTGGTGGAACAAATACATCAGGCGCGTGAAAGCCGTCAACGC 396 ************************ *********************************** consensus_3686#0 CAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCA 719 consensus_3686#1 CAAAGCGAGCTACCGGATGCTGACGAATGCGGACATAAAAGCGATTCCGCTCGAACGCCA 456 ************************************************************ consensus_3686#0 TCGGCACGAAAATACGCTCGTGGTTGTATGGTGCACGAACGCACCGTCTCACATCGATGC 779 consensus_3686#1 TCGGCACGAAAATACGCTCGTGGTGGTGTGGTGCACGAACGCACCGTCTCATATCGATGC 516 ************************ ** *********************** ******** consensus_3686#0 GGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGCTTGCTGGTACTGGGT 839 consensus_3686#1 GGTGGTGAAGGATTTTTTCCCCAAGTGGGGTGTCGAGCTGGTCGGTTGCTGGTACTGGGT 576 ******************************************** *************** consensus_3686#0 CAAGATTACGGGCAGCAGCGGTCAGCCGGTGTGCAAATTTAACGAACCGACGCAAAAACA 899 consensus_3686#1 CAAGATTACGGCCAGCAGCGGTCAGCCGATGTGCAAATTTAACGAACCGGCCCAAAAACA 636 *********** **************** ******************** * ******** consensus_3686#0 ACCATACGAGCGGATCTTTATCGGCTTACCGAAGGAATCGCCGATGGCCCGAACATTCCC 959 consensus_3686#1 ACCATACGAGCGGATCTTTATCGGCTTACCGCAGAGGTCGCCGATGGCCCGAACATTCCC 696 ******************************* ** *********************** consensus_3686#0 AAGCGAACGGTTCCTGTACTCGGTACCGTGTGCAATACATTCGCACAAACCACCACTGTA 1019 consensus_3686#1 AAGCGAACGGTTCCT--------------------------------------------- 711 *************** consensus_3686#0 CGGTATGTTTCTTTCAGAGAATTAAAAG 1047 consensus_3686#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||