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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3687#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1164 fasta sequence
[CAGAATCCCCGAGGTTAACGAATAGTTAATGCAGAGGCTGCAGGTGTTGATGTGTTATGCTTGCAGCTGTAGGATGCTGGTGACAAGAATGAGCTAGAACAACACACACACTACAAACACGGAGGTGTATATTGTGAAAGCTACATATAGATAAGTGGGAATGTGGGCAAACTAATCTGAACTCGATGCTATAGCATAAGTAACCTANAAACATAAACGCAAAGTGAGCGAGTATATGAGTTTGCATAACACATAAAGCAAATGCCNCTGTACNCTAATCGCGCNNGCGNNNCCCGCACGCTCACATTACGCAACGCACACTACACACGCACCNNCACCCCCCACGCACGCACGACTGGACACCACACCCCACGCAATGGCCACAACACCCGGAAGGGCCANACGACACCTGGACCTNACGGCTACCACGNGCNCTCCCCACACCCGACCACCACCCCACGCACACCACACCCCTACCACTCACGCGCACCNANCNCNANNCCAAAACCTCCCGCCCTCCCCGCAAGCTGGCCTTGNANACCTCCCGGCCCGACACCACAGAGCACAACATGGTGNGACGACGAGNACNAACCNACCATCANAGACGNCAACACTTGGGGGGTCCACAACACACGCCCCCACACNCCGACACNGGCTAGCCCNCCCTNGGAACACCCTANCACAAACCCCCAAGNANACACANAGCCCTTAACAACACTAAACAGCATCCCAACTTAATCGTGCCCCCGNCNCACACACNTAGGCCGAAAAAACCCCGGGACAGAACAGCCNACCGGGACTGTACCGCCCATAAAACACAGANAACATNGACTTTCCNGACCNNCACCCCCACCCTTTTCTGCTACNCCCCCGACTCGTTCAACCACACCCACTCCCAGCTANCCTGTCTATACACACAACACCCCNTACCCTNAATATCNACCCGCCCNTATAACACACAANCACCCCCCCCCTTGCCTCACCCACCCTTANGATCNCATNGACCCNCCTAATCAAAAACACGNCGAATTGTACTTCNCACTNAANACCACTTCCAANTCCCTCACTTNACCANTATTACACTCNCCACTATGTANCNACAACCCCTACCCACNCACTTNCATCCCAANNCACCNCTCCCCACTATCNCACAACCACCCCCCT]
[+] EMBL AL692478 [CAGAATCCCCGAGGTTAACGAATAGTTAATGCAGAGGCTGCAGGTGTTGATGTGTTATGCTTGCAGCTGTAGGATGCTGGTGACAAGAATGAGCTAGAACAACACACACACTACAAACACGGAGGTGTATATTGTGAAAGCTACATATAGATAAGTGGGAATGTGGGCAAACTAATCTGAACTCGATGCTATAGCATAAGTAACCTANAAACATAAACGCAAAGTGAGCGAGTATATGAGTTTGCATAACACATAAAGCAAATGCCNCTGTACNCTAATCGCGCNNGCGNNNCCCGCACGCTCACATTACGCAACGCACACTACACACGCACCNNCACCCCCCACGCACGCACGACTGGACACCACACCCCACGCAATGGCCACAACACCCGGAAGGGCCANACGACACCTGGACCTNACGGCTACCACGNGCNCTCCCCACACCCGACCACCACCCCACGCACACCACACCCCTACCACTCACGCGCACCNANCNCNANNCCAAAACCTCCCGCCCTCCCCGCAAGCTGGCCTTGNANACCTCCCGGCCCGACACCACAGAGCACAACATGGTGNGACGACGAGNACNAACCNACCATCANAGACGNCAACACTTGGGGGGTCCACAACACACGCCCCCACACNCCGACACNGGCTAGCCCNCCCTNGGAACACCCTANCACAAACCCCCAAGNANACACANAGCCCTTAACAACACTAAACAGCATCCCAACTTAATCGTGCCCCCGNCNCACACACNTAGGCCGAAAAAACCCCGGGACAGAACAGCCNACCGGGACTGTACCGCCCATAAAACACAGANAACATNGACTTTCCNGACCNNCACCCCCACCCTTTTCTGCTACNCCCCCGACTCGTTCAACCACACCCACTCCCAGCTANCCTGTCTATACACACAACACCCCNTACCCTNAATATCNACCCGCCCNTATAACACACAANCACCCCCCCCCTTGCCTCACCCACCCTTANGATCNCATNGACCCNCCTAATCAAAAACACGNCGAATTGTACTTCNCACTNAANACCACTTCCAANTCCCTCACTTNACCANTATTACACTCNCCACTATGTANCNACAACCCCTACCCACNCACTTNCATCCCAANNCACCNCTCCCCACTATCNCACAACCACCCCCCT]
consensusID : consensus_3687#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1034 fasta sequence
[TGTTTGATTACTGTACTGCAGTTGCTGTTTTTTCCCCATTTGCAAATGGCGTTTGATGAGCTGCAAAGCGCAGCTCATTATCGATGATGGTTGGTCGATCGTGGAAACGGGGTCTGATGTGTACAAATGAATTTGATGGGCATTCAGCAGTCAGTTTGCGTCATTTTTATTGAGAATGTCAATTTCACTGTACTCGGAGTGTAATGAGTGGCAGTAGTTAATTGACACGTTGTAAAATTGAAACTCTTTTTGGTATGGTTTTTTTTTAATACAACATAAGTGTGAATGTCACATCGCACAATCTCAAATTGCATCGTGTTCCGCTACACTTGTACTATAAAGACAGTCTATCAATAAACATCCACTCCCATGGCATGCCCGTAATAGCTTGTTTTCTAATAGCTTTAATGTTTACTAAAGTCTCTATTGTATAGGAACGAATAGTTAAATGCAGAGGCTGCAGGTGTTGATGTGTTTGCTGCCAGCTGTCGGCATGCTGCTGACAAGAATGAGCTAGACACACACACACACACTCAACCACGGCAGGTGTATTTTTGCAAAGCTACATTAGATAAGGGGAATGTGGGCAAACTAATCTGAACTCGATGCTATAGCATAAGTAACCTAAAACATAAACGCAAAGTTAGCGAGTATATGAGTTGAATAAACATAAAGCAAATGCAATGTAGCTAATCGGGGGAAGGAAGTATTAGAGAATTAAGAAAAAAAGAGAGATGAAAAAACAGATGCAAAACGAGGCAAGAATGATAAGTAAAGTTAAAACGAAAACAAGAAAAAATAATAGGATAAAACAAATCGCTTCGATGTGATTGAAAAGCATGGAAAACAAAAGAATGGTCAAACCCAAAAGTAAATGAACAAACCAAACACTACATAATCATACGCCGAAATGCAAACCGAAACACGTACCAACGGTGTCGTACATTGACCGCGACACTCGTTGTAGAAGCTCTAAGCGCTAAAGCCCTGTACATATTTGCGTTAACGGTGTTACAAAATCCATCCATCCCTCC]
[+] EMBL BX615527 [TGTTTGATTACTGTACTGCAGTTGCTGTTTTTTCCCCATTTGCAAATGGCGTTTGATGAGCTGCAAAGCGCAGCTCATTATCGATGATGGTTGGTCGATCGTGGAAACGGGGTCTGATGTGTACAAATGAATTTGATGGGCATTCAGCAGTCAGTTTGCGTCATTTTTATTGAGAATGTCAATTTCACTGTACTCGGAGTGTAATGAGTGGCAGTAGTTAATTGACACGTTGTAAAATTGAAACTCTTTTTGGTATGGTTTTTTTTTAATACAACATAAGTGTGAATGTCACATCGCACAATCTCAAATTGCATCGTGTTCCGCTACACTTGTACTATAAAGACAGTCTATCAATAAACATCCACTCCCATGGCATGCCCGTAATAGCTTGTTTTCTAATAGCTTTAATGTTTACTAAAGTCTCTATTGTATAGGAACGAATAGTTAAATGCAGAGGCTGCAGGTGTTGATGTGTTTGCTGCCAGCTGTCGGCATGCTGCTGACAAGAATGAGCTAGACACACACACACACACTCAACCACGGCAGGTGTATTTTTGCAAAGCTACATTAGATAAGGGGAATGTGGGCAAACTAATCTGAACTCGATGCTATAGCATAAGTAACCTAAAACATAAACGCAAAGTTAGCGAGTATATGAGTTGAATAAACATAAAGCAAATGCAATGTAGCTAATCGGGGGAAGGAAGTATTA ]
[+] EMBL BX615953 [ GCTTGTTTTCTAATAGCTTTAATGTTTACTAAAGTCTCTATTGTATAGGAACGAATAGTTAAATGCAGAGGCTGCAGGTGTTGATGTGTTTGCTGCCAGCTGTCGGCATGCTGCTGACAAGAATGAGCTAGACACACACACACACACTCAACCACGGCAGGTGTATTTGTGCAAAGCTACATTAGATAAGGGGAATGTGGGCAAACTAATCTGAACTCGATGCTATAGCATAAGTAACCTAAAACATAAACGCAAAGTGAGCGAGTATATGAGTTGAATAAACATAAAGCAAATGCAATGTAGCTAATCGGGGGAAGGAAGTATTAGAGAATTAAGAAAAAAAGAGAGATGAAAAAACAGATGCAAAACGAGGCAAGAATGATAAGTAAAGTTAAAACGAAAACAAGAAAAAATAATAGGATAAAACAAATCGCTTCGATGTGATTGAAAAGCATGGAAAACAAAAGAATGGTCAAACCCAAAAGTAAATGAACAAACCAAACACTACATAATCATACGCCGAAATGCAAACCGAAACACGTACCAACGGTGTCGTACATTGACCGCGACACTCGTTGTAGAAGCTCTAAGCGCTAAAGCCCTGTACATATTTGCGTTAACGGTGTTACAAAATCCATCCATCCCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3687#0 CAGAATCCCCGAGGTTAACGAATAGTTAATGCAGAGGCTGCAGGTGTTGATGTGTTATGC 60
consensus_3687#1 ------------------TGTTTGATTACTGTA----CTGCAGTTGCTG-----TTTTTT 33
* * *** ** * ****** ** ** ** *
consensus_3687#0 TTGCAGCTGTAGGATGCTGGTGACAAGAATGAGCTAGAACAACACA-CACACTACAAACA 119
consensus_3687#1 CCCCATTTGCAAATGGCGTTTGA------TGAGCTGCAA-AGCGCAGCTCATTATCGATG 86
** ** * ** *** ****** ** * * ** * ** ** *
consensus_3687#0 CGGAGGTGTATATTGTGAAAGCTACATATAGATAAGTGGGAATGTGGGCAAACTAATCTG 179
consensus_3687#1 ATGGTTGGTCGATCGTGGAAACGGGGTCT-GATGTGTACAAATG-----AATTTGATGGG 140
* ** ** *** ** * * * *** ** **** ** * ** *
consensus_3687#0 AACTCGATGCTATAGCATAAGTAACCTANAAACATAAACGCAAAGTGAGCGAGTATATGA 239
consensus_3687#1 CATTCAGCAGT-CAGTTTGCGTCATTTTTATTGAGAATGTCAATTTCACT--GTACTCGG 197
* ** * ** * ** * * * * ** *** * * *** *
consensus_3687#0 GTTTGCATAACACATAAAGCAAATGCCNCTGTACNCTAATCGCGCNNGCGNNNCCCGCAC 299
consensus_3687#1 A---GTGTAATGAGT--GGCAGTAGTTAATTGACAC--GTTGTAAAATTGAAACTCTTTT 250
* *** * *** * * ** * * * * * *
consensus_3687#0 GCTCACATTACGCAACGCACACTACACACGCACCNNCACCCCCCACGCACGCACGACTGG 359
consensus_3687#1 TGGTATGGTTTTTTTTTAATACAACATAAGTGTGAATGTCACAT-----CGCACAATCTC 305
* * * ** *** * * * * ***** *
consensus_3687#0 ACACCACACCCCACGCAATGGCCACAACACCCGGAAGGGCCANACGACACCTGGACCTNA 419
consensus_3687#1 AAATTGCATCGTGTTC------CGCTACACTTGTA----CTATA-AAGAC---AGTCTAT 351
* * ** * * * * **** * * * * * * ** **
consensus_3687#0 CGGCTACCACGNGCNCTCCCCACACCCGACCACCACCCCACGCACACCACACCCCTACCA 479
consensus_3687#1 CAATAAACATCCACTCCCATGGCATGCCCGTAATAGCTTGTTTTC-TAATAGCTTTAATG 410
* * ** * * * ** * * * * * * * * **
consensus_3687#0 CTCACGCGCACCNANCNCNANNCCAAAACCTCCCGCCCTCCCCGCAAGCTGGCCTTGNAN 539
consensus_3687#1 TTTAC-TAAAGTCTCTATTGTATAGGAACGAATAGTTAAATGCAGAGGCTGCAGGTGTTG 469
* ** * *** * * * **** **
consensus_3687#0 ACCTCCCGGCCCGACACCACAGAGCACAACATGGTGNGACGACGAGNACNAACCNACCAT 599
consensus_3687#1 ATGT----GTTTGCTGCC--AGCTGTCGGCATGCTGC--TGACAAGAATGAGCTAGACA- 520
* * * * ** ** * **** ** *** ** * * * **
consensus_3687#0 CANAGACGNCAACACTTGGGGGGTCCACAACACACGC--CCCCACACNCCGACACNGGCT 657
consensus_3687#1 CACACACAC--ACACTCAA-----CCACGGCAGGTGTATTTTTGCAAAGCTACATTAGAT 573
** * ** ***** **** ** * ** * *** * *
consensus_3687#0 AGCCCNCCCTNGGAACACCCTANCACAAACCCCCAAGNANACACANAGCCCTTAACAACA 717
consensus_3687#1 AAGGGGAATGTGGG-CAAACTAATCTGAACTC-----GATGC-TATAGCA-TAAGTAACC 625
* ** ** *** *** * * * * *** * * ***
consensus_3687#0 CTAAACAGCATCCCAACTTAATCGTGCCCCCGNCNCACACACNTAGGCCGAAAAAACCCC 777
consensus_3687#1 TAAAACATAAACGCAAAGTTAGCGAGTATATGAGTTGAATAAACATAAAGCAAATGCAAT 685
***** * * *** * * ** * * * * * * *** *
consensus_3687#0 GGGACAGAACAGCCNACCGGGACTGTACCGCCCATAAAACACAGANAACATNGACTTTCC 837
consensus_3687#1 GTAGCTAATCGGGGGAAGGAAGTATTAGAGAATTAAGAAAAAAAGAGAGATGAAAAAACA 745
* * * * * * * ** * * ** * * * ** * *
consensus_3687#0 NGACCNNCACCCCCACCCTTTTCTGCTACNCCCCCGACTCGTTCAACCACACCCACTCCC 897
consensus_3687#1 GATGCAAAAC--------------GAGGCAAGAATGATAAGTAAAGTTAAAACGAAAACA 791
* ** * * ** ** * * * * * *
consensus_3687#0 AGCTANCCTGTCTATACACACAACACCCCNTACCCTNAATATCNACCCGCCCNTATAACA 957
consensus_3687#1 AGAAAAAATAATAGGATAA--AACAAATCGCTTCGATGTGATTGAAAAGCATGGAAAACA 849
** * * * * **** * * ** * ** * ****
consensus_3687#0 CACAANCACCCCCCCCCTTGCCTCACCCACCCTTANGATCNCATNGACCCNCCTAATCAA 1017
consensus_3687#1 AAAGAATGGTCAAACCCAAAAGTAAATGAAC----AAACCAAACA---CTACATAATCA- 901
* * * *** * * * * * * * * * ******
consensus_3687#0 AAACACGNCGAATTGTACTTCNCACTNAANACCACTTCCAANTCCCTCACTTNACCANTA 1077
consensus_3687#1 ---TACGCCGAAATGCA------AACCGAAACACGTACCAACGGTGTCGTACATTGACCG 952
*** **** ** * * * ** * **** ** *
consensus_3687#0 TTACACTCNCCACTATGTANCNACAACCCCTACCCACNCACTTNCATCCCAANNCACCNC 1137
consensus_3687#1 CGACACTCGTTGTA--GAAGCTCTAAGCGCTAAAGCCCTGTACATATTTGCGTTAACGGT 1010
****** * * * ** * *** * ** **
consensus_3687#0 TCCCCACTATCNCACAACCACCCCCCT 1164
consensus_3687#1 GTTACAAAATCCATCCATCCCTCC--- 1034
** *** * * * * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||