These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence [ATACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAGCAAGGGATAAGGGCCCGTGATGGGAGCAGGAAGGAGGAATTATGAAGCAATCGAATGAATGTAAAAGCCGTAGCAATGATGATTGGATGCTAGCAGCATATGTTTGTTTGACACACACAACATTGCAGAATATTGAATGAGAAGCGGAGAAGAAAGTGCTGGGAGAATCGTATGGAATGGAAAATGAAGACTCACACACATACACAGTTTCGGTAAGCCAGTGACGCTGTAACTGCTTTACACCCCGTTCGCGGGCAGTCTGAAGGGCTGTGGTACCTAAGAATGCAAATGGTTTGTAATGCGCAGGAAGAAAGCACGTGGAGCTCTTCCAGGAGCACCACATGTTACTGTTACCACTGAAGGATGCAATCACTGGATCTTTTCTTCCACCATAACTTCAAGACTTCACACTCTGTTCCCTCTATCGCAAAACACTCTCTTCCACTGGTACCTTCTACCTTTCCCGGGTAGAAGGATCTTCAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAATATGCTGGTTGATCAGGACGTATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTCTTGCAATGTTGAGCTACTAGCGTGAACAATGATATGTCTAGCTAAATGATACATAAATTCCGAACCGTGAGAAAATATGTGTGTGAAAGAGAAAGGAGATAGAGGGCGATTAGCTCCTTGGCTCCTTCAAGCAAAGCGTTT] [+] EMBL BX612655 [ATACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAGCAAGGGATAAGGGCCCGTGATGGGAGCAGGAAGGAGGAATTATGAAGCAATCGAATGAATGTAAAAGCCGTAGCAATGATGATTGGATGCTAGCAGCATATGTTTGTTTGACACACACAACATTGCAGAATATTGAATGAGAAGCGGAGAAGAAAGTGCTGGGAGAATCGTATGGAATGGAAAATGAAGACTCACACACATACACAGTTTCGGTAAGCCAGTGACGCTGTAACTGCTTTACACCCCGTTCGCGGGCAGTCTGAAGGGCTGTGGTACCTAAGAATGCAAATGGTTTGTAATGCGCAGGAAGAAAGCACGTGGAGCTCTTCCAGGAGCACCACATGTTACTGTTACCACTGAAGGATGCAATCACTGGATCTTTTCTTCCACCATAACTTCAAGACTTCACACTCTGTTCCCTCTATCGCAAAACACTCTCTTCCACTGGTACCTTCTACCTTTCCCGGGTAGAAGGATCTTCAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAATATGCTGGTTGATCAGGACGTATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTCTTGCAATGTTGAGCTACTAGCGTGAACAATGATATGTCTAGCTAAATGATACATAAATTCCGAACCGTGAGAAAATATGTGTGTGAAAGAGAAAGGAGATAGAGGGCGATTAGCTCCTTGGCTCCTTCAAGCAAAGCGTTT] consensusID : consensus_3689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence [CAGAATCCCCGNGGTTAAGACACGCGTTCAAGTATATACACTCATTATTACGTTTGAACAAATGACGTTGATTGAATAGATTCATCAGCAATAATAAACAATTGTGATAATACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAGCAAGGCGCATAAGGGCCCGCTGATGGGCAGCAGGCAAGGCAGCGCAATTATGACAGCAATCGGAATGCAATGCTACACACAGCCGTANCCAATGCATAGATATAGGCATGCTAGCCAGCATCATGCTTATGGTTGACCACCACACCACNCCATTGCCACGCACACTATCTGCAATGANCAACGCGGAGAAGAAAGTCGCTCGGCGAGAATCGCAACTNGGCAATAGGAANCANCGCACNNCGCACCTCCACACACNATACACCACGCCCCCGCGCCNCNNCCAGCAGACAGCCCTAAGCNAACTCGCTCCCCACCACCCCCGCCACCCGCCNCGNCCAGCCCCCGACACGCAGCGACCNAGCAGAGCTACACACCCTAAAAACNAAAAACTGGCGCACANACAGGGGCCAACGACAACACANGACACGCCAACACGNACAGGAANAAGGCCCACGGGAGAGACAGCGTCATACACCACAGGGCAGCCANCCCCACCAATGCTACAACCNGACAAACCCCACACACTAGCAACACGACGACNNGCACCACACCAACCANAGGAGANNAAATA] [+] EMBL AL692495 [CAGAATCCCCGNGGTTAAGACACGCGTTCAAGTATATACACTCATTATTACGTTTGAACAAATGACGTTGATTGAATAGATTCATCAGCAATAATAAACAATTGTGATAATACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAGCAAGGCGCATAAGGGCCCGCTGATGGGCAGCAGGCAAGGCAGCGCAATTATGACAGCAATCGGAATGCAATGCTACACACAGCCGTANCCAATGCATAGATATAGGCATGCTAGCCAGCATCATGCTTATGGTTGACCACCACACCACNCCATTGCCACGCACACTATCTGCAATGANCAACGCGGAGAAGAAAGTCGCTCGGCGAGAATCGCAACTNGGCAATAGGAANCANCGCACNNCGCACCTCCACACACNATACACCACGCCCCCGCGCCNCNNCCAGCAGACAGCCCTAAGCNAACTCGCTCCCCACCACCCCCGCCACCCGCCNCGNCCAGCCCCCGACACGCAGCGACCNAGCAGAGCTACACACCCTAAAAACNAAAAACTGGCGCACANACAGGGGCCAACGACAACACANGACACGCCAACACGNACAGGAANAAGGCCCACGGGAGAGACAGCGTCATACACCACAGGGCAGCCANCCCCACCAATGCTACAACCNGACAAACCCCACACACTAGCAACACGACGACNNGCACCACACCAACCANAGGAGANNAAATA] consensusID : consensus_3689#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [CCGCGGACGCGTGGGCTTCAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAATATGCTGGTTGATCAGGACGCATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTCTTGCAATGTTGAGCTCCCCAGCGTGAACAATGATATGTCTAGCTAAATGATACACAAATTTCGAACCGTGAGAAAATATGTGTGTGAAAGAGAGAGGGAGAGAGAGGGCGATTAGCTCCTTGGCTCCTTCAAGCAAAGCGTTTGGCAATGATGATGGGAAAAGCGAGCGAACACGAACCAGGTGACAAAAGTGGCACGACACAAACTTACAACAACCAACACTAGAACAAGATCAACAAAGCAGTAAAAGCATCTCTTTCTCACGCTCTAACTCTTAGCTATCCCTAGCGATTGATACCCAACCCAATGATTGGCCATTAGGGGAAAGTAAACTACCATACCATCTCTTGTTGTCTTTTAAAACAAAACAAAAAGCTCTACGTGTGTATAAAACTACAAGTCAAAAGGTAAAGACAAAACTCCAAACTATTGCCATTAATTCTGCGCAAATAAG] [+] EMBL BM627445 [CCGCGGACGCGTGGGCTTCAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAATATGCTGGTTGATCAGGACGCATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTCTTGCAATGTTGAGCTCCCCAGCGTGAACAATGATATGTCTAGCTAAATGATACACAAATTTCGAACCGTGAGAAAATATGTGTGTGAAAGAGAGAGGGAGAGAGAGGGCGATTAGCTCCTTGGCTCCTTCAAGCAAAGCGTTTGGCAATGATGATGGGAAAAGCGAGCGAACACGAACCAGGTGACAAAAGTGGCACGACACAAACTTACAACAACCAACACTAGAACAAGATCAACAAAGCAGTAAAAGCATCTCTTTCTCACGCTCTAACTCTTAGCTATCCCTAGCGATTGATACCCAACCCAATGATTGGCCATTAGGGGAAAGTAAACTACCATACCATCTCTTGTTGTCTTTTAAAACAAAACAAAAAGCTCTACGTGTGTATAAAACTACAAGTCAAAAGGTAAAGACAAAACTCCAAACTATTGCCATTAATTCTGCGCAAATAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3689#0 ATACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAG 60 consensus_3689#2 ------------------------------------------CCGCGGACGCGTGGGCTT 18 consensus_3689#1 ------CAGAATCCCCGNGGTTAAGACACGCGTTCAAGTA---TATACACTCATTATTAC 51 * * * consensus_3689#0 CAAGGGATAAGG-GCCCGTGATGGGAGCAGGAAGGAGGAATTATGAAGCAATCGAATGAA 119 consensus_3689#2 CAATCTTCCTTCCATCCATTACGGTA-TAGCGAGCAGCA--TAATATGCTGGTTGATCAG 75 consensus_3689#1 GTTTGAACAAATGACGTTGATTGAATAGATTCATCAGCAA-TAATAAACAATTGTGATAA 110 * * * ** * ** * * * consensus_3689#0 TGTAAAAGCCGTAGCAATGATGAT-TGGATGCTAGCAGCATATGTTTGTTTGACACACAC 178 consensus_3689#2 GACGCATATTG-ATCACAAACGAT-CGTGCGATCTCGGCACCTATTC--TTGCAATGTTG 131 consensus_3689#1 TACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAGC 170 * * ** * * * * * * consensus_3689#0 AACATTGCAGAATATTGAATGAGAAGCGGAGAAGAAAGTGCTGGGAGAATCGTATGGAAT 238 consensus_3689#2 AGCTCCCCAGCGTGAACAATGATATGTCTAGCT--AAATGATACACAAATT---TCGAAC 186 consensus_3689#1 AAGGCGCATAAGGGCCCGCTGATGGGCAGCAGGCAAGGCAGCGCAATTATGACAGCAATC 230 * *** * * ** * consensus_3689#0 GGAAAATGAAGACTCACACACATACACAGTTTCGGTA-AGCCAGTGACGCTGTAACTGCT 297 consensus_3689#2 CG----TGAGAAAATATGTGTGTGAAAGAGAGAGGGA-GAGAGAGGGCGAT-TAGCTCCT 240 consensus_3689#1 GGAA--TGCAATGCTACACACAGCCGTANCCAATGCATAGATATAGGCATGCTAGCCAGC 288 * ** * * * * * ** * consensus_3689#0 TTACACCCCGTTCGCGGGCAGTCTGAAGGGCTGTGGTACCTAAGAATGCAAATGGTTTGT 357 consensus_3689#2 TGGCTCCTT-----CAAGCAAAGCGTTTGGCAATGATGATGGGAAAAGCGAGCGAACACG 295 consensus_3689#1 ATCATGCTTATGGTTGACCACCACACCACNCCATTGCCACGCACACTATCTGCAATGANC 348 * ** * * * consensus_3689#0 AATGCGCAGGAAGAAAGCACGTGGAGCTCTTC------CAGGAGCACCACATGTTACTGT 411 consensus_3689#2 AACCAGGTGACAAAAGTGGCACGACACAAACT------TACAACAACCA-ACACTAGAAC 348 consensus_3689#1 AACGCGGAGAAGAAAGTCGCTCGGCGAGAATCGCAACTNGGCAATAGGAANCANCGCACN 408 ** * * ** * * * * * consensus_3689#0 TACCACTGAAGGATGCAAT-CACTGGATCTTTTCTTCCACCATAACTTCAAGACTTCA-- 468 consensus_3689#2 AA--GATCAACAAAGCAGT-AAAAGCATCTCTTTCTC------------ACGCTCTAA-- 391 consensus_3689#1 NCGCACCTCCACACACNATACACCACGCCCCCGCGCCNCNNCCAGCAGACAGCCCTAAGC 468 * * * * * * * * * consensus_3689#0 CACTCTGTTCCCTCTATCGCAAAACACTCTCTTCCACTGGTACCTTCTACCTTTCCCGGG 528 consensus_3689#2 CTCTTAGCTATCCCTAGCGATTGATACCCAACCCAATGATTGGCCATTAGGGGA---AAG 448 consensus_3689#1 NAACTCGCTCCCCACCACCCCCGCCACCCGCCNCGNCCAGCCCCCGACACGCAGCGACCN 528 * * * * ** * * * * consensus_3689#0 TAGAAGGATCTTCAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAATATGCTG 588 consensus_3689#2 TAAACTACCATACCATCT-CTTGTTGTCTTTTAAAACAAAACAAAAAGCTCTACGTGTGT 507 consensus_3689#1 AGCAGAGCTACACACCCTAAAAACNAAAAACTGGCGCACANACAGGGGC-CAACGACAAC 587 * * ** * * * * ** * consensus_3689#0 GTTGATCAGGACGTATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTCTTGCAA 648 consensus_3689#2 ATAAAACTACAAGTCAAAAGGTAAAGACAAAACTCCAAACTATTGCCATTAATTCTGCGC 567 consensus_3689#1 ACANGACACGCCA-ACACGNACAGGAANAAGGCCCACGGGAGAGACAGC--GTCATACAC 644 * * * * * * * * consensus_3689#0 TGTTGAGCTACTAGCGTGAACAATGATATGTCTAGCTAAATGATACATAAATTCCGAACC 708 consensus_3689#2 AAATAAG----------------------------------------------------- 574 consensus_3689#1 CACAGGGCAGCCANCCCCACCAATGCTACAACCNGACAAACCCCACACACTAGCAACACG 704 * consensus_3689#0 GTGAGAAAATATGTGTGTGAAAGAGAAAGGAGATAGAGGGCGATTAGCTCCTTGGCTCCT 768 consensus_3689#2 ------------------------------------------------------------ consensus_3689#1 ACGACNNGCACCACACCAACCANAGGAGANNAAATA------------------------ 740 consensus_3689#0 TCAAGCAAAGCGTTT 783 consensus_3689#2 --------------- consensus_3689#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||