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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 888 fasta sequence
[TCCAATTGTACCGGCCTCGATTTTGGCTGGTTTAACAACATTAAGCTATATTTTACACATATTTTACATATTTTACTGGGTAACCGGCAAGCACAATAGAACAAAAATAGTGTAAGATAAATGTTTAGCGTTCGGAATGAAGTATTCCAACCAAAGGCATCGTAAATTCCTGAGAGTTACATTAGTTTGTCTGTCCATCAAAACTAAGGTTTACAAATAATCTCCTTAATCTAACAGTAATTCGTTTGTTTTTGAAACCTAATTTTTACAAGCGATATTCGTTCAGTGTTTTTAAGGCGTGTACGGCATCGTTTTGATTGCTCGTGACAGGGAAGTTTACTTTTACAGTAAAGTTTTATCGTATCTTTTCATTCTTTATTCCAACCATGTTGTGATATTCAGTTTGAAGTGTTTTTGGATCATTCCATCACGCAAACAGATGAAATCTTCCGCAGACTTTTTTATTTTAAAAGAATCCATCTATCTATTCATATTGTTGCATTTCCCGCTACAAATTAGTATCATTTACGAACGCTGTCAGTCTCGATTACTACTTATATATTTG-AAAAAAAGGACATTGGAATGTAATTTGTATACCGCAACCAGAAACCATCTCCACCGTTACTGATAATTCAGAAAAGTTTTTTTTTCGCATTTAAGAAACCCCTAAGCACACCAAAGAAGAAGACAAAACAAAAAAACATGACCAAGCATAGTTCGTCTCATTATTTGTTGTACCTTTTTTGTGCAGCTCTCTATTCNAGATTTTAAACTAATTTTACCTGTTCGCAACAATGTCGCTACAAATACAAAATGTGTAAAACAGTCCGATTCGTTGCTATCGGAAGAACTCTTATAATCTGCTGAATTGTGAATATGAGTTGAGCG]
[+] EMBL BX625046 [TCCAATTGTACCGGCCTCGATTTTGGCTGGTTTAACAACATTAAGCTATATTTTACACATATTTTACATATTTTACTGGGTAACCGGCAAGCACAATAGAACAAAAATAGTGTAAGATAAATGTTTAGCGTTCGGAATGAAGTATTCCAACCAAAGGCATCGTAAATTCCTGAGAGTTACATTAGTTTGTCTGTCCATCAAAACTAAGGTTTACAAATAATCTCCTTAATCTAACAGTAATTCGTTTGTTTTTGAAACCTAATTTTTACAAGCGATATTCGTTCAGTGTTTTTAAGGCGTGTACGGCATCGTTTTGATTGCTCGTGACAGGGAAGTTTACTTTTACAGTAAAGTTTTATCGTATCTTTTCATTCTTTATTCCAACCATGTTGTGATATTCAGTTTGAAGTGTTTTTGGATCATTCCATCACGCAAACAGATGAAATCTTCCGCAGACTTTTTTATTTTAAAAGAATCCATCTATCTATTCATATTGTTGCATTTCCCGCTACAAATTAGTATCATTTACGAACGCTGTCAGTCTCGATTACTACTTATATATTTG AAAAAAAGGACATTGGAAT ]
[+] EMBL BX620061 [ AATCTCCTTAATCTAAGAGTAATTCGTTTGTTTTTGAAACCTAATTTTTACAAGCGATATTCGTTCAGTGTTTTTACGGCGTGTACGGCATCCTTTTGATTGCTCGTGGCAGGGAAGTTTACTTTTACAGTAAAGTTTTATCGTATCTTTTCATTCTTTATTCCAACCATGTTGTGATATTCAGTTTGAAGTGTTTTTGGATCATTCCATCACGCAAACAGATGAAATCTTCCGCAGACTTTTTTGTTTTAAAAGAATCCATCTATCTATTCATATTGTTGCATTTCCCGCTACAAATTAGTATCATTTACAAACGCTGTCAGTCTCGATTACTACTTATATATTTGAAAAAAAAGGACATTGGAATGTAATTTGTATACCGCAACCAGAAACCATCTCCACCGTTACTGATAATTCAGAAAAGTTTTTTTTTCGCATTTAAGAAACCCCTAAGCACACCAAAGAAGAAGACAAAACAAAAAAACATGACCAAGCATAGTTCGTCTCATTATTTGTTGTACCTTTTTTGTGCAGCTCTCTATTCNAGATTTTAAACTAATTTTACCTGTTCGCAACAATGTCGCTACAAATACAAAATGTGTAAAACAGTCCGATTCGTTGCTATCGGAAGAACTCTTATAATCTGCTGAATTGTGAATATGAGTTGAGCG]
consensusID : consensus_3690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence
[AGAATCCCCCGCAGGTTNAGTCTGTCCATCAAAACTAAGGTTTACAAATAATCTCCTTAATCTAACAGTAATTCGTTTGTTTTTGAAACCTAATTTTTACAAGCGATATTCGTTCAGTGTTTTTAAGGCGTGTACGGCATCGTTTNTGATATGCTCGTGACAGGGAAGTTTACTTNTTACAGTAAAGTTATATATCGTATCTTTTCATNTACTTTATTCCAACCATGTTGTGATATTCAGTTTGNACGTGTNCACCCGGCATCATTCCATCACGCAAACAGATGCAACATCTTCCGCAGACTTTCTCTTATTATTNAACAAAGAATTCCANTCTATCTACTNTCACTATCACGCTCGCACTTTNCCCGACTACAAAAATTTCAGCTAATCAATTATACGAAACGGCTGTCAGTCCTCGGAATCTACGTACCTCTATATACTTTCTGACACACACAAACAAGGGACCATTAGGGACACTGCTAAATCTCCGGNNNACTAACCCGGCAAACCCAGCAAAACCCAATCTCCCGGANACCCGGNTTTAACCTGGNACTTAACTCTTCCCCACGGGGCCAAGAAAACGGGANTATATNCACGNAANCACAGAACNCACCGGGCCACAGTTTTCTTCACCACGGGCAAAAAACAAGAAGCCGCCCCCCTTTAAAAAGGAGCCAACCGCAACCCCCACAACACGANGAGCAACAACGGGACAGCAAGCNACAACACNANCCCAACACNCGAACAAGAACAAACCACAGTGGTNAGGCCCCACAAGGNCNAAGT]
[+] EMBL AL692504 [AGAATCCCCCGCAGGTTNAGTCTGTCCATCAAAACTAAGGTTTACAAATAATCTCCTTAATCTAACAGTAATTCGTTTGTTTTTGAAACCTAATTTTTACAAGCGATATTCGTTCAGTGTTTTTAAGGCGTGTACGGCATCGTTTNTGATATGCTCGTGACAGGGAAGTTTACTTNTTACAGTAAAGTTATATATCGTATCTTTTCATNTACTTTATTCCAACCATGTTGTGATATTCAGTTTGNACGTGTNCACCCGGCATCATTCCATCACGCAAACAGATGCAACATCTTCCGCAGACTTTCTCTTATTATTNAACAAAGAATTCCANTCTATCTACTNTCACTATCACGCTCGCACTTTNCCCGACTACAAAAATTTCAGCTAATCAATTATACGAAACGGCTGTCAGTCCTCGGAATCTACGTACCTCTATATACTTTCTGACACACACAAACAAGGGACCATTAGGGACACTGCTAAATCTCCGGNNNACTAACCCGGCAAACCCAGCAAAACCCAATCTCCCGGANACCCGGNTTTAACCTGGNACTTAACTCTTCCCCACGGGGCCAAGAAAACGGGANTATATNCACGNAANCACAGAACNCACCGGGCCACAGTTTTCTTCACCACGGGCAAAAAACAAGAAGCCGCCCCCCTTTAAAAAGGAGCCAACCGCAACCCCCACAACACGANGAGCAACAACGGGACAGCAAGCNACAACACNANCCCAACACNCGAACAAGAACAAACCACAGTGGTNAGGCCCCACAAGGNCNAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3690#0 TCCAATTGTACCGGCCTCGATTTTGGCTGGTTTAACAACATTAAGCTATATTTTACACAT 60
consensus_3690#1 ------------------------------------------------------------
consensus_3690#0 ATTTTACATATTTTACTGGGTAACCGGCAAGCACAATAGAACAAAAATAGTGTAAGATAA 120
consensus_3690#1 ------------------------------------------------------------
consensus_3690#0 ATGTTTAGCGTTCGGAATGAAGTATTCCAACCAAAGGCATCGTAAATTCCTGAGAGTTAC 180
consensus_3690#1 --------------------------------------------------AGAATCCCCC 10
** *
consensus_3690#0 ATTAGTTT-GTCTGTCCATCAAAACTAAGGTTTACAAATAATCTCCTTAATCTAACAGTA 239
consensus_3690#1 GCAGGTTNAGTCTGTCCATCAAAACTAAGGTTTACAAATAATCTCCTTAATCTAACAGTA 70
*** ***************************************************
consensus_3690#0 ATTCGTTTGTTTTTGAAACCTAATTTTTACAAGCGATATTCGTTCAGTGTTTTTAAGGCG 299
consensus_3690#1 ATTCGTTTGTTTTTGAAACCTAATTTTTACAAGCGATATTCGTTCAGTGTTTTTAAGGCG 130
************************************************************
consensus_3690#0 TGTACGGCATCGTTTT-GAT-TGCTCGTGACAGGGAAGTTTACTTTT-ACAGTAAAGTTT 356
consensus_3690#1 TGTACGGCATCGTTTNTGATATGCTCGTGACAGGGAAGTTTACTTNTTACAGTAAAGTTA 190
*************** *** ************************ * ***********
consensus_3690#0 TAT--CGTATCTTTTCATT--CTTTATTCCAACCATGTTGTGATATTCAGTTTGAA-GTG 411
consensus_3690#1 TATATCGTATCTTTTCATNTACTTTATTCCAACCATGTTGTGATATTCAGTTTGNACGTG 250
*** ************* ********************************* * ***
consensus_3690#0 TTTTT---GGATCATTCCATCACGCAAACAGATGAAA--TCTTCCGCAGACTTTTTTATT 466
consensus_3690#1 TNCACCCGGCATCATTCCATCACGCAAACAGATGCAACATCTTCCGCAGACTTTCTCTTA 310
* * ************************ ** *************** * *
consensus_3690#0 TTA------AAAGAATCC--ATCTATCTATTCATATTGTTGCA--------TTTCCCG-C 509
consensus_3690#1 TTATTNAACAAAGAATTCCANTCTATCTACTNTCACTATCACGCTCGCACTTTNCCCGAC 370
*** ******* * ******** * * * * * ** **** *
consensus_3690#0 TACAAA----TTAGT--ATCATTTACG---AACG-CTGTCAGTC-TCGATTACTAC---- 554
consensus_3690#1 TACAAAAATTTCAGCTAATCAATTATACGAAACGGCTGTCAGTCCTCGGAATCTACGTAC 430
****** * ** **** *** **** ********* *** ****
consensus_3690#0 --TTATATATTT------------GAAAAAAAGGACATT-GGAATGTAATTTGTATACCG 599
consensus_3690#1 CTCTATATACTTTCTGACACACACAAACAAGGGACCATTAGGGACACTGCTAAATCTCCG 490
****** ** ** ** * **** ** * * ***
consensus_3690#0 CAACCAGAAACCATC---TCCACCGTTACTGATAATTCAGAAAA----GTTTTTTTTTCG 652
consensus_3690#1 GNNNACTAACCCGGCAAACCCAGCAAAACCCAATCTCCCGGANACCCGGNTTTAACCTGG 550
** ** * *** * ** * * * * * * * *** * *
consensus_3690#0 CATTTAAGAAACCCCTAAGCACACCAAAGAAGAAGACAAAACAAAAAAACATGACCAAGC 712
consensus_3690#1 NACTTAACTCTTCCCCACGGGGCCAAGAAAACGGGANTATATNCACGNA-ANCACAGAAC 609
* **** *** * * * * * ** ** * * * * * ** * *
consensus_3690#0 ATAGTTCGTCTCATTATTTGTTGT-ACCTTTTTTGTGCAGCTCTCTATTCNAGATTTTAA 771
consensus_3690#1 NCACCGGGCCACAGTTTTCTTCACCACGGGCAAAAAACAAGAAGCCGCCCCCCTTTAAAA 669
* * * ** * ** * ** ** * * ** **
consensus_3690#0 ACTAATTTTACCTGTTCGCAACAATGTCGCTACAAATACAAAATGTGTAAAACAGTCCGA 831
consensus_3690#1 AGGAGCCAACCGCAACCCCCACAA---CACGANGAGCAACAACGGGACAGCAAGCNACAA 726
* * * * * **** * * * * * ** * * * * *
consensus_3690#0 TTCGTTGCTATCGGAAGAACTCTTATAATCTGCTGAATTGTGA----ATATGAGTTGAGC 887
consensus_3690#1 CACNANCCCAACACNCGAACAAGAACAAACCACAGTGGTNAGGCCCCACAAGGNCNAAGT 786
* * * * **** * ** * * * * * * * * **
consensus_3690#0 G 888
consensus_3690#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||