cluster # 3691

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Anopheles gambiae
cluster # 3691 cluster # 3691 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3691#0 length = 727 sequences # 1

consensus_3691#1 length = 659 sequences # 2

consensusID : consensus_3691#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 727
fasta sequence

                              [CAGAATCCCGCAGGTTTAGGCGTATGGACGCTGCAGATCAAATACGTGCAGGCCCGTGACGCTGGCATTTACGAGTGTCAGGTGTCGACGGAACCGAAAATCAGCGCCCGAGTACATCTGCATGTCGTTGTGCCAAGAACCGAGCTTATAGGTGACTCCGATCGCTACGTCAAGGGCCGGCAGTGCCGTCATCCTGCGATGTGTGGTCCGGGGCGCCCTCGAGCCACCTTCCTACATCATCTGGTACCACGGTACGCAGCAGATCTTCACCGAGAGCCGGCGCTGGCTGGAAGACGCAGCTGGACCGCGGTGCACCCGATCTCGATGGGGACATCCACAGTACGATTGGCTCGCTGATAATAGAATCGACGCAGAAAGAAGGACTCCGGAAATTACTCCTGCAGCCCATCCAACAGTCCACCGATCACTGTCTCACTGCACGTTATCAACGGAGAATCGTCTGCATCCGCTGTCACGTCATCGGCAAGATCGCTGTCTGATGACAGCATATCGATGTTCAAGCAGCGCAATCTACAGATTCTACTCCGGCATAGGTCATTTGNTTATGCTACTTGCTATTGTCTATCTATGCTCAGCTAAGCTGTCATGTGAACTATAGTCTTTAAGCATAAAAGTTNNGACGTATTAAGGCACGCATTTAGAGCAGCAGCAGCAGCCAGCAGCAGCAACAAGCAACAACGGGGGGCAGCAAACCGGCAGGGNAGAN]

[+] EMBL AL692515             [CAGAATCCCGCAGGTTTAGGCGTATGGACGCTGCAGATCAAATACGTGCAGGCCCGTGACGCTGGCATTTACGAGTGTCAGGTGTCGACGGAACCGAAAATCAGCGCCCGAGTACATCTGCATGTCGTTGTGCCAAGAACCGAGCTTATAGGTGACTCCGATCGCTACGTCAAGGGCCGGCAGTGCCGTCATCCTGCGATGTGTGGTCCGGGGCGCCCTCGAGCCACCTTCCTACATCATCTGGTACCACGGTACGCAGCAGATCTTCACCGAGAGCCGGCGCTGGCTGGAAGACGCAGCTGGACCGCGGTGCACCCGATCTCGATGGGGACATCCACAGTACGATTGGCTCGCTGATAATAGAATCGACGCAGAAAGAAGGACTCCGGAAATTACTCCTGCAGCCCATCCAACAGTCCACCGATCACTGTCTCACTGCACGTTATCAACGGAGAATCGTCTGCATCCGCTGTCACGTCATCGGCAAGATCGCTGTCTGATGACAGCATATCGATGTTCAAGCAGCGCAATCTACAGATTCTACTCCGGCATAGGTCATTTGNTTATGCTACTTGCTATTGTCTATCTATGCTCAGCTAAGCTGTCATGTGAACTATAGTCTTTAAGCATAAAAGTTNNGACGTATTAAGGCACGCATTTAGAGCAGCAGCAGCAGCCAGCAGCAGCAACAAGCAACAACGGGGGGCAGCAAACCGGCAGGGNAGAN]




>consensus_3691#0
CAGAATCCCGCAGGTTTAGGCGTATGGACGCTGCAGATCAAATACGTGCAGGCCCGTGAC
GCTGGCATTTACGAGTGTCAGGTGTCGACGGAACCGAAAATCAGCGCCCGAGTACATCTG
CATGTCGTTGTGCCAAGAACCGAGCTTATAGGTGACTCCGATCGCTACGTCAAGGGCCGG
CAGTGCCGTCATCCTGCGATGTGTGGTCCGGGGCGCCCTCGAGCCACCTTCCTACATCAT
CTGGTACCACGGTACGCAGCAGATCTTCACCGAGAGCCGGCGCTGGCTGGAAGACGCAGC
TGGACCGCGGTGCACCCGATCTCGATGGGGACATCCACAGTACGATTGGCTCGCTGATAA
TAGAATCGACGCAGAAAGAAGGACTCCGGAAATTACTCCTGCAGCCCATCCAACAGTCCA
CCGATCACTGTCTCACTGCACGTTATCAACGGAGAATCGTCTGCATCCGCTGTCACGTCA
TCGGCAAGATCGCTGTCTGATGACAGCATATCGATGTTCAAGCAGCGCAATCTACAGATT
CTACTCCGGCATAGGTCATTTGNTTATGCTACTTGCTATTGTCTATCTATGCTCAGCTAA
GCTGTCATGTGAACTATAGTCTTTAAGCATAAAAGTTNNGACGTATTAAGGCACGCATTT
AGAGCAGCAGCAGCAGCCAGCAGCAGCAACAAGCAACAACGGGGGGCAGCAAACCGGCAG
GGNAGAN

consensusID : consensus_3691#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 659
fasta sequence

                              [TGCATATCTGCCGTGCAAGGTGAAACAGCTAGGGAACAAATCTGTTTCGTGGGTACGAGTGAGAGATGATCACATTCTCACAGTGGACAGGATGACATTTATAGCCGACGAGCGCTTTCAATCATTCTACGTGTAGAGCAGCGGCGTATGGACGCTGCAGATCAAATACGTGCAGGCCCGTGACGCTGGCATTTACGAGTGTCAGGTGTCGACGGAACCGAAAATCAGCGCCCGAGTACATCTGCATGTCGTTGTGCCAAGAACCGAGCTTATAGGTGACTCCGATCGCTACGTCAAGGCCGGCAGTGCCGTCATCCTGCGATGTGTGGTCCGGGGCGCCCTCGAGCCACCTTCCTACATCATCTGGTACCACGGTACGCAGCAGATCTTCACCGAGAGCCGGCGCGGCTGGAAGACGCAGCTGGACCGCGGTGCACCCGATCTCGATGGGGACATCCACAGTACGATTGGCTCGCTGATAATAGAATCGACGAGAAAGAAGGACTCCGGAAATTACTCCTGCAGCCCATCCAACAGTCCACCGATCACTGTCTCACTGCACGTTATCAACGGAGAATCGTCTGCATCCGCTGTCACGTCATCGGCAAGATCGCTGTTTGATGACAGCATATCGATGTTCAAGCAGCGCAATCTACAGA]

[+] EMBL BX610537             [TGCATATCTGCCGTGCAAGGTGAAACAGCTAGGGAACAAATCTGTTTCGTGGGTACGAGTGAGAGATGATCACATTCTCACAGTGGACAGGATGACATTTATAGCCGACGAGCGCTTTCAATCATTCTACGTGTAGAGCAGCGGCGTATGGACGCTGCAGATCAAATACGTGCAGGCCCGTGACGCTGGCATTTACGAGTGTCAGGTGTCGACGGAACCGAAAATCAGCGCCCGAGTACATCTGCATGTCGTTGTGCCAAGAACCGAGCTTATAGGTGACTCCGATCGCTACGTCAAGGCCGGCAGTGCCGTCATCCTGCGATGTGTGGTCCGGGGCGCCCTCGAGCCACCTTCCTACATCATCTGGTACCACGGTACGCAGCAGATCTTCACCGAGAGCCGGCGCGGCTGGAAGACGCAGCTGGACCGCGGTGCACCCGATCTCGATGGGGACATCCACAGTACGATTGGCTCGCTGATAATAGAATCGACGAGAAAGAAGGACTCCGGAAATTACTCCTGCAGCCCATCCAACAGTCCACCGATCACTGTCTCACTGCACGTTATCAACGGAGAATCGTCTGCATCCGCTGTCACGTCATCGGCAAGATCGCTGTTTGATGACAGCATATCGATGTTCAAGCAGCGCAATCTACAGA]
[+] EMBL BX610538             [            GTGCAAGGTGAAACAGCTAGGGAACAAATCTGTTTCGTGGGTACGAGTGAGAGATGATCACATTCTCACAGTGGACAGGATGACATTTATAGCCGACGAGCGCTTTCAATCATTCTACGTGTAGAGCAGCGGCGTATGGACGCTGCAGATCAAATACGTGCAGGCCCGTGACGCTGGCATTTACGAGTGTCAGGTGTCGACGGAACCGAAAATCAGCGCCCGAGTACATCTGCATGTCGTTGTGCCAAGAACCGAGCTTATAGGTGACTCCGATCGCTACGTCAAGGCCGGCAGTGCCGTCATCCTGCGATGTGTGGTCCGGGGCGCCCTCGAGCCACCTTCCTACATCATCTGGTACCACGGTACGCAGCAGATCTTCACCGAGAGCCGGCGCG                                                                                                                                                                                                                                                            ]




>consensus_3691#1
TGCATATCTGCCGTGCAAGGTGAAACAGCTAGGGAACAAATCTGTTTCGTGGGTACGAGT
GAGAGATGATCACATTCTCACAGTGGACAGGATGACATTTATAGCCGACGAGCGCTTTCA
ATCATTCTACGTGTAGAGCAGCGGCGTATGGACGCTGCAGATCAAATACGTGCAGGCCCG
TGACGCTGGCATTTACGAGTGTCAGGTGTCGACGGAACCGAAAATCAGCGCCCGAGTACA
TCTGCATGTCGTTGTGCCAAGAACCGAGCTTATAGGTGACTCCGATCGCTACGTCAAGGC
CGGCAGTGCCGTCATCCTGCGATGTGTGGTCCGGGGCGCCCTCGAGCCACCTTCCTACAT
CATCTGGTACCACGGTACGCAGCAGATCTTCACCGAGAGCCGGCGCGGCTGGAAGACGCA
GCTGGACCGCGGTGCACCCGATCTCGATGGGGACATCCACAGTACGATTGGCTCGCTGAT
AATAGAATCGACGAGAAAGAAGGACTCCGGAAATTACTCCTGCAGCCCATCCAACAGTCC
ACCGATCACTGTCTCACTGCACGTTATCAACGGAGAATCGTCTGCATCCGCTGTCACGTC
ATCGGCAAGATCGCTGTTTGATGACAGCATATCGATGTTCAAGCAGCGCAATCTACAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3691#0      ------------------------------------------------------------
consensus_3691#1      TGCATATCTGCCGTGCAAGGTGAAACAGCTAGGGAACAAATCTGTTTCGTGGGTACGAGT 60
                                                                                  

consensus_3691#0      -----------------------------------------------------------C 1
consensus_3691#1      GAGAGATGATCACATTCTCACAGTGGACAGGATGACATTTATAGCCGACGAGCGCTTTCA 120
                                                                                  

consensus_3691#0      AGAATCCCGCAGGTTTAG-----GCGTATGGACGCTGCAGATCAAATACGTGCAGGCCCG 56
consensus_3691#1      ATCATTCTACGTGTAGAGCAGCGGCGTATGGACGCTGCAGATCAAATACGTGCAGGCCCG 180
                      *  ** *  *  **  **     *************************************

consensus_3691#0      TGACGCTGGCATTTACGAGTGTCAGGTGTCGACGGAACCGAAAATCAGCGCCCGAGTACA 116
consensus_3691#1      TGACGCTGGCATTTACGAGTGTCAGGTGTCGACGGAACCGAAAATCAGCGCCCGAGTACA 240
                      ************************************************************

consensus_3691#0      TCTGCATGTCGTTGTGCCAAGAACCGAGCTTATAGGTGACTCCGATCGCTACGTCAAGGG 176
consensus_3691#1      TCTGCATGTCGTTGTGCCAAGAACCGAGCTTATAGGTGACTCCGATCGCTACGTCAAGG- 299
                      *********************************************************** 

consensus_3691#0      CCGGCAGTGCCGTCATCCTGCGATGTGTGGTCCGGGGCGCCCTCGAGCCACCTTCCTACA 236
consensus_3691#1      CCGGCAGTGCCGTCATCCTGCGATGTGTGGTCCGGGGCGCCCTCGAGCCACCTTCCTACA 359
                      ************************************************************

consensus_3691#0      TCATCTGGTACCACGGTACGCAGCAGATCTTCACCGAGAGCCGGCGCTGGCTGGAAGACG 296
consensus_3691#1      TCATCTGGTACCACGGTACGCAGCAGATCTTCACCGAGAGCCGGCGC-GGCTGGAAGACG 418
                      *********************************************** ************

consensus_3691#0      CAGCTGGACCGCGGTGCACCCGATCTCGATGGGGACATCCACAGTACGATTGGCTCGCTG 356
consensus_3691#1      CAGCTGGACCGCGGTGCACCCGATCTCGATGGGGACATCCACAGTACGATTGGCTCGCTG 478
                      ************************************************************

consensus_3691#0      ATAATAGAATCGACGCAGAAAGAAGGACTCCGGAAATTACTCCTGCAGCCCATCCAACAG 416
consensus_3691#1      ATAATAGAATCGACG-AGAAAGAAGGACTCCGGAAATTACTCCTGCAGCCCATCCAACAG 537
                      *************** ********************************************

consensus_3691#0      TCCACCGATCACTGTCTCACTGCACGTTATCAACGGAGAATCGTCTGCATCCGCTGTCAC 476
consensus_3691#1      TCCACCGATCACTGTCTCACTGCACGTTATCAACGGAGAATCGTCTGCATCCGCTGTCAC 597
                      ************************************************************

consensus_3691#0      GTCATCGGCAAGATCGCTGTCTGATGACAGCATATCGATGTTCAAGCAGCGCAATCTACA 536
consensus_3691#1      GTCATCGGCAAGATCGCTGTTTGATGACAGCATATCGATGTTCAAGCAGCGCAATCTACA 657
                      ******************** ***************************************

consensus_3691#0      GATTCTACTCCGGCATAGGTCATTTGNTTATGCTACTTGCTATTGTCTATCTATGCTCAG 596
consensus_3691#1      GA---------------------------------------------------------- 659
                      **                                                          

consensus_3691#0      CTAAGCTGTCATGTGAACTATAGTCTTTAAGCATAAAAGTTNNGACGTATTAAGGCACGC 656
consensus_3691#1      ------------------------------------------------------------
                                                                                  

consensus_3691#0      ATTTAGAGCAGCAGCAGCAGCCAGCAGCAGCAACAAGCAACAACGGGGGGCAGCAAACCG 716
consensus_3691#1      ------------------------------------------------------------
                                                                                  

consensus_3691#0      GCAGGGNAGAN 727
consensus_3691#1      -----------