These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCGGTTTATGTTATTTACTTTGGCAGTATCGTATCAGTGAATCATTTTGTAAAGAGATGTAAATAATTTGCTCCAAAAATACCGTTTTGCGTCACGCATCGAGGTGCATAGTGTGGTCGCCACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTACAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCAGGGACAGCTTCGCCGCCGGCGACAGCTTGGACGATGTGCAGCAGTCTGTGCCGCAGCCGTCCGACGAGGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGCGTGTGCAATCGAGTCGGCTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTCGAGTATCGTAATGTGCATCTGCGCTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGAAGAATGGATGGCGAGTGGGGAAATCTTTCGCTCGCTGTACATGA] [+] EMBL BM613438 [CCGGTTTATGTTATTTACTTTGGCAGTATCGTATCAGTGAATCATTTTGTAAAGAGATGTAAATAATTTGCTCCAAAAATACCGTTTTGCGTCACGCATCGAGGTGCATAGTGTGGTCGCCACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTACAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCAGGGACAGCTTCGCCGCCGGCGACAGCTTGGACGATGTGCAGCAGTCTGTGCCGCAGCCGTCCGACGAGGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGCGTGTGCAATCGAGTCGGCTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTCGAGTATCGTAATGTGCATCTGCGCTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGAAGAATGGATGGCGAGTGGGGAAATCTTTCGCTCGCTGTACATGA] consensusID : consensus_3698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CCGCCCACGCGTCCGAGTGAATCATTTTGTAAAGAGATGTAAGTAATTTGCTCCAAAATACCGTTTTGCGACACGCATCGAGGTGCATAGTGTGGTCGCCACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGACAGCTTGGACGATGTGCAACAGTCCATGCCGCAGCCGTCCGACGATGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGCGTGTGCAATCGAGTCGGCTGCCCGGGCCAACCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTTGAGTATCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGCAAGAATGGATGGCGAGTGGGGAAATCTTTTCGCTCGCTGTACATGAACTC] [+] EMBL BM597408 [CCGCCCACGCGTCCGAGTGAATCATTTTGTAAAGAGATGTAAGTAATTTGCTCCAAAATACCGTTTTGCGACACGCATCGAGGTGCATAGTGTGGTCGCCACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGACAGCTTGGACGATGTGCAACAGTCCATGCCGCAGCCGTCCGACGATGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGCGTGTGCAATCGAGTCGGCTGCCCGGGCCAACCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTTGAGTATCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGCAAGAATGGATGGCGAGTGGGGAAATCTTTTCGCTCGCTGTACATGAACTC] consensusID : consensus_3698#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [GAATCCCCCGAGGTTNGACAGAACGGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTCCTGTTTCTTTCGGCCGCACTATACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGACAGCTTGGACGATGTGCAGCAGTCCATGCCGCAGCGTCCGACGATGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGCCTGAACGCCCGACAAGCGTGTGCAATAGAGTCGGTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACACACGACACAGCAATCCTTGACGCACTGCTTGAGTATCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGAAGAATGGATGGCGAG] [+] EMBL AL692593 [GAATCCCCCGAGGTTNGACAGAACGGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTCCTGTTTCTTTCGGCCGCACTATACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGACAGCTTGGACGATGTGCAGCAGTCCATGCCGCAGCGTCCGACGATGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGCCTGAACGCCCGACAAGCGTGTGCAATAGAGTCGGTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACACACGACACAGCAATCCTTGACGCACTGCTTGAGTATCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGAAGAATGGATGGCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3698#1 --------------------CCGCCCACGCGTCCGAGTGAATCATTTTGTAAAGAGATGT 40 consensus_3698#2 ------------------------------------------------------------ consensus_3698#0 CCGGTTTATGTTATTTACTTTGGCAGTATCGTATCAGTGAATCATTTTGTAAAGAGATGT 60 consensus_3698#1 AAGTAATTTGCTCCAAAA-TACCGTTTTGCGACACGCATCGAGGTGCATAGTGTGGTCGC 99 consensus_3698#2 -------------------------------------------------GAATCCCCCGA 11 consensus_3698#0 AAATAATTTGCTCCAAAAATACCGTTTTGCGTCACGCATCGAGGTGCATAGTGTGGTCGC 120 ** consensus_3698#1 CACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCG 159 consensus_3698#2 GGTTNGACAGAAC-GGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCG 70 consensus_3698#0 CACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTACAACCGATGCGATACAAACGGCG 180 * ******** ********************** *********************** consensus_3698#1 GATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCC 219 consensus_3698#2 GATCGTGTACGTGTTCCTGTTTCTTTCGGCCGCACTATACATCCTGTACAGCTGCATTCC 130 consensus_3698#0 GATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCC 240 *************** ******************** *********************** consensus_3698#1 GGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGA 279 consensus_3698#2 GGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGA 190 consensus_3698#0 GGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCAGGGACAGCTTCGCCGCCGGCGA 300 ************************************* ********** ******** ** consensus_3698#1 CAGCTTGGACGATGTGCAACAGTCCATGCCGCAGCCGTCCGACGATGGGCGTAACATCTT 339 consensus_3698#2 CAGCTTGGACGATGTGCAGCAGTCCATGCCGCAGC-GTCCGACGATGGGCGTAACATCTT 249 consensus_3698#0 CAGCTTGGACGATGTGCAGCAGTCTGTGCCGCAGCCGTCCGACGAGGGGCGTAACATCTT 360 ****************** ***** ********* ********* ************** consensus_3698#1 CTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGC 399 consensus_3698#2 CTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGCCTGAACGCCCGACAAGC 309 consensus_3698#0 CTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGC 420 ****************************************** ***************** consensus_3698#1 GTGTGCAATCGAGTCGGCTGCCCGGGCCAACCCGGAGTGGAACGTGTACGTACTGTTTGC 459 consensus_3698#2 GTGTGCAATAGAGTCGG-TGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGC 368 consensus_3698#0 GTGTGCAATCGAGTCGGCTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGC 480 ********* ******* ************ ***************************** consensus_3698#1 GGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTTGAGTA 519 consensus_3698#2 GGCTCCGGTTGGCTTCCGGAAC-ACACGACACAGC-AATCCTTGACGCACTGCTTGAGTA 426 consensus_3698#0 GGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTCGAGTA 540 ********************** ************ ****************** ***** consensus_3698#1 TCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGC 579 consensus_3698#2 TCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGG- 485 consensus_3698#0 TCGTAATGTGCATCTGCGCTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGG- 599 *** ************** **************************************** consensus_3698#1 AAGAATGGATGGCGAGTGGGGAAATCTTTTCGCTCGCTGTACATGAACTC 629 consensus_3698#2 AAGAATGGATGGCGAG---------------------------------- 501 consensus_3698#0 AAGAATGGATGGCGAGTGGGGAAATCTTT-CGCTCGCTGTACATGA---- 644 **************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||