These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 926 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGATCGCCTGCGATCGCTTCCGGGACAAAAGCACGCTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATACACGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTGATAAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTTGACGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCGCACATACGCGAGAGCGGCGTGTTGAATCTTAGCCTCCTAGGAGAAACCGAAGCAACCGAAGCGTACTAGAGAAGGTAGACATCATGCGGTTAGTGTTGCGCAACCGCAAGCTCCCGTTGGCCGCCGTCGGCTGCCTGGTCGGGCTGGTGTTGCTCTGGAAATGGGCGGACGTGCGATCGATGTGCTGGGGCGGCAGCAGCAGCAGTGCCCACAGTGCCGGTGTCATGGTGCGAGATGAACAGACGGCGGAAGGTGGAGGCAACTATCGGTACCATCGGAACATGCCGCTAATATTTTATCGGCGGTGTGCCCCGTTCCGGTACCACGCTGATGCGCGCCATGCTAGATGCCCATCCGGAAGTACGCTGCGGTCAGGAAACGCGCGTCATACCACGCATCCTGCAGCTGCGCTCCCACTGGATGAAGTCGGAGAAGGAATCGGTCCGGCTGGTGGAGGCCGGCATCACGAAGGAGGTGCTGAACGGGGCGATCGCCCAGTTCTGTCTCGAGATCATTGCCAAGCACGGCGATCCGGCCCCGCGGCTCTGCAACAAGGATCCGCTCACGCTCAAGATGGGCTCGTACGTGATCGAGCTGTTCCCGGCGGCCAAGTTTCTGTTCATGGTGCGGGAACGGGCGGGCCAC] [+] EMBL BM650625 [CCGCCCACGCGTCCGCCCACGCGTCCGATCGCCTGCGATCGCTTCCGGGACAAAAGCACGCTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATACACGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTGATAAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTTGACGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCGCACATACGCGAGAGCGGCGTGTTGAATCTTAGCCTCCTAGGAGAAACCGAAGCAACCGAAGCGTACTAGAGAAGGTAGACATCATGCGGTTAGTGTTGCGCAACCGCAAGCTCCCGTTGGCCGCCGTCGGCTGCCTGGTCGGGCTGGTGTTGCTCTGGAAATGGGCGGACGTGCGATCGATGTGCTGGGGCGGCAGCAGCAGCAGTGCCCACAGTGCCGGTGTCATGGTGCGAGATGAACAGACGGCGGAAGGTGGAGGCAACTATCGGTACCATCGGAACATGCCGCTAATATTTTATCGGCGGTGTGCCCCGTTCCGG ] [+] EMBL BM609029 [ ccgGTACTAGAGAAGGTAGACATCATGCGGTTAGTGTTGCGCAACCGCAAGCTCCCGTTGGCCGCCGTCGGCTGCCTGGTCGGGCTGGTGTTGCTCTGGAAATGGGCGGACGTGCGATCGATGTGCTGGGGCGGCAGCAGCAGCAGTGCCCACAGTGCCGGTGTCATGGTGCGAGATGAACAGACGGCGGAAGGTGGAGGCAACTATCGGTACCATCGGAACATGCCGCTAATA TTTATCGGCGGTGTGCCCCGTTCCGGTACCACGCTGATGCGCGCCATGCTAGATGCCCATCCGGAAGTACGCTGCGGTCAGGAAACGCGCGTCATACCACGCATCCTGCAGCTGCGCTCCCACTGGATGAAGTCGGAGAAGGAATCGGTCCGGCTGGTGGAGGCCGGCATCACGAAGGAGGTGCTGAACGGGGCGATCGCCCAGTTCTGTCTCGAGATCATTGCCAAGCACGGCGATCCGGCCCCGCGGCTCTGCAACAAGGATCCGCTCACGCTCAAGATGGGCTCGTACGTGATCGAGCTGTTCCCGGCGGCCAAGTTTCTGTTCATGGTGCGGGAACGGGCGGGCCAC] consensusID : consensus_3699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGGACTTCCCCATCCAGCGTCAACTTCTGCTGCTGTGCCCGGTTGTGCATTGTATCGCCTTTCCAGACCGAGAGCAACCATCAGCAACATCTCGCGAGCGAACCATATCGACGCTTTACCTCCTTCCCCCTTTTCTTCCTTCTCTTCTCTCCCTTCTACTCCCGCGGTCGCCAACGGAGCGCCGGCTACGTCAATTTTGCCAATATATCTTCCAACGCGCGGCGCTCATCACTGGAGCGCTCTGCACGTGCCGGGCGGACCGGGGGAACCGATACAGGCCGAATTAATTGCACAAACGCGTTCGTTCCTTTAGCTTTACCCTTTTAACTATCTTAACTAACAGCGCTGAACTGAAACAAACAAAAAACTGAAGAGAAAAAAAAAACATATCGCCTGCGATCGCTTCCGGGACAAAAGCACGCTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATACACGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTGATAAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTTGACGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCGAGAGCGGCGTGTTGAATCTTAGCCTC] [+] EMBL BM611910 [CCGGACTTCCCCATCCAGCGTCAACTTCTGCTGCTGTGCCCGGTTGTGCATTGTATCGCCTTTCCAGACCGAGAGCAACCATCAGCAACATCTCGCGAGCGAACCATATCGACGCTTTACCTCCTTCCCCCTTTTCTTCCTTCTCTTCTCTCCCTTCTACTCCCGCGGTCGCCAACGGAGCGCCGGCTACGTCAATTTTGCCAATATATCTTCCAACGCGCGGCGCTCATCACTGGAGCGCTCTGCACGTGCCGGGCGGACCGGGGGAACCGATACAGGCCGAATTAATTGCACAAACGCGTTCGTTCCTTTAGCTTTACCCTTTTAACTATCTTAACTAACAGCGCTGAACTGAAACAAACAAAAAACTGAAGAGAAAAAAAAAACATATCGCCTGCGATCGCTTCCGGGACAAAAGCACGCTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATACACGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTGATAAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTTGACGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCGAGAGCGGCGTGTTGAATCTTAGCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3699#0 CCGCCCACGCGTCCGCCCACGCGTCCGATCGCCTGCGATCGCTTCCGGGACAAAAGCACG 60 consensus_3699#1 ------------------------------------------------------------ consensus_3699#0 CTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATACA 120 consensus_3699#1 ------------------------------------------------------------ consensus_3699#0 CGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTGAT 180 consensus_3699#1 -------------------------------------------------------CCGGA 5 * * consensus_3699#0 AAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTTGA 240 consensus_3699#1 CTTCCCCATCCAGCGTCAACTTCTGCTGCTGTGCCCGGTTGTGCATTGTATCGCCTTT-- 63 * *** ** * ** ** *** * * ** * * * ** consensus_3699#0 CGAAATCGGAACCCGCCGCTTGT--CTACACACAAGCCCCGCGCACATACGCGAGAGCGG 298 consensus_3699#1 CCAGACCGAGAGCAACCATCAGCAACATCTCGCGAGCGAACCATATCGACGCTTTACCTC 123 * * * ** * * ** * * * * * *** * * **** * * consensus_3699#0 CGTGTTGAATCTTAGCCTCCTAGGAGAAACCGAA-GCAACCGAAGCGTACTAGAGAAGGT 357 consensus_3699#1 CTTCCCCCTTTTCTTCCTTCTCTTCTCTCCCTTCTACTCCCGCGGTCGCCAACGGAGCGC 183 * * * * *** ** ** * *** * * * ** * consensus_3699#0 AGACATCATGCGGTTAGTGTTGCGCAACCGCAAGCTCCCGTTGGCCGCCGTCGG--CTGC 415 consensus_3699#1 CGGCTACGT-CAATTTTGCCAATATATCTTCCAACGCGCGGCGCTCATCACTGGAGCGCT 242 * * * * * ** * * * * * * ** * * * ** * consensus_3699#0 CTGGTCGGGCTGGTGTTGCTCTGGAAATGGGCGGACGTGCGATCGATGTGCTGGGGCGGC 475 consensus_3699#1 CTGCACGTGCCGGGCGGACCGGGGGAACCGATACAGGCCGAATTAAT-TGC-------AC 294 *** ** ** ** * ** ** * * * ** ** *** * consensus_3699#0 AGCAGCAGCAGTGCCCACAGTGCCGGTGTCATGGTGCGAGATGAACAGACGGCGGAAGGT 535 consensus_3699#1 AAACGCGTTCGTTCCTTTAGCTTTACCCTTTTA--ACTATCTTAACTAACAGCGCTGAAC 352 * ** ** ** ** * * * * * *** ** *** consensus_3699#0 GGAGGCAACTATCGGTACCATCGGAACATGCCGCTAATATTTTATCGGCGGTGTGCCCCG 595 consensus_3699#1 TGAAACAAACAAAAAACTGAAGAGAAAAAAAA---AACATATCGCCTGCGATCGCTTCCG 409 ** *** * * *** * ** ** * * *** * *** consensus_3699#0 TTCCGGTACCACGCTGATGCGCGCCATGCTAGATGCCCATCCGGAAGTACGCTGCGGTCA 655 consensus_3699#1 GGACAAAAGCACGCTAAGGAA----ATATTCCGCAAGCAGTTG-AAGAACGCGGTCACAA 464 * * ****** * * ** * ** * *** **** * * consensus_3699#0 GGAAACGCGCGTCATAC-CACGCATCCTGCAGCTGCGCTCCCACTGGATGAAGTCGGAGA 714 consensus_3699#1 AGAAAAGCGACTAATACACGCCAAAACCCCGTTCGTTCGTTTGTTG-ACCGGGTAAGTGG 523 **** *** * **** * * * * * * * ** * ** * * consensus_3699#0 AGGAATCGGTCCGGCTGGTGGAGGCCGGCATCACGAAGGAGGTGCT---GAACGGGGCGA 771 consensus_3699#1 CTAATCTTTTAAAGCTGATAAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGC 583 * * **** * *** * * ** * * ** * ** ** consensus_3699#0 TCGCCCAGTTCTGTCTCGAGATCATTGCCAAGCACGGCGATCCGGCCCCGCGGCTCTGCA 831 consensus_3699#1 TGGTCCGGGTGCACGTTGACGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCG 643 * * ** * * * ** ** * * * * ** * * * ** * ** consensus_3699#0 ACAAGGATCCGCTCACGCTCAAGATGGGCTCGTACGTGATCGAGCTGTTCCCGGCGGCCA 891 consensus_3699#1 AGAGCGGCGTGTTGAATCTTAGCCTC---------------------------------- 669 * * * * * * ** * * consensus_3699#0 AGTTTCTGTTCATGGTGCGGGAACGGGCGGGCCAC 926 consensus_3699#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||