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Anopheles gambiae
cluster # 3699 cluster # 3699       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3699#0 length = 926 sequences # 2  
consensus_3699#1 length = 669 sequences # 1  

consensusID : consensus_3699#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 926
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGATCGCCTGCGATCGCTTCCGGGACAAAAGCACGCTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATACACGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTGATAAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTTGACGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCGCACATACGCGAGAGCGGCGTGTTGAATCTTAGCCTCCTAGGAGAAACCGAAGCAACCGAAGCGTACTAGAGAAGGTAGACATCATGCGGTTAGTGTTGCGCAACCGCAAGCTCCCGTTGGCCGCCGTCGGCTGCCTGGTCGGGCTGGTGTTGCTCTGGAAATGGGCGGACGTGCGATCGATGTGCTGGGGCGGCAGCAGCAGCAGTGCCCACAGTGCCGGTGTCATGGTGCGAGATGAACAGACGGCGGAAGGTGGAGGCAACTATCGGTACCATCGGAACATGCCGCTAATATTTTATCGGCGGTGTGCCCCGTTCCGGTACCACGCTGATGCGCGCCATGCTAGATGCCCATCCGGAAGTACGCTGCGGTCAGGAAACGCGCGTCATACCACGCATCCTGCAGCTGCGCTCCCACTGGATGAAGTCGGAGAAGGAATCGGTCCGGCTGGTGGAGGCCGGCATCACGAAGGAGGTGCTGAACGGGGCGATCGCCCAGTTCTGTCTCGAGATCATTGCCAAGCACGGCGATCCGGCCCCGCGGCTCTGCAACAAGGATCCGCTCACGCTCAAGATGGGCTCGTACGTGATCGAGCTGTTCCCGGCGGCCAAGTTTCTGTTCATGGTGCGGGAACGGGCGGGCCAC]

[+] EMBL BM650625             [CCGCCCACGCGTCCGCCCACGCGTCCGATCGCCTGCGATCGCTTCCGGGACAAAAGCACGCTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATACACGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTGATAAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTTGACGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCGCACATACGCGAGAGCGGCGTGTTGAATCTTAGCCTCCTAGGAGAAACCGAAGCAACCGAAGCGTACTAGAGAAGGTAGACATCATGCGGTTAGTGTTGCGCAACCGCAAGCTCCCGTTGGCCGCCGTCGGCTGCCTGGTCGGGCTGGTGTTGCTCTGGAAATGGGCGGACGTGCGATCGATGTGCTGGGGCGGCAGCAGCAGCAGTGCCCACAGTGCCGGTGTCATGGTGCGAGATGAACAGACGGCGGAAGGTGGAGGCAACTATCGGTACCATCGGAACATGCCGCTAATATTTTATCGGCGGTGTGCCCCGTTCCGG                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM609029             [                                                                                                                                                                                                                                                                                                                                                    ccgGTACTAGAGAAGGTAGACATCATGCGGTTAGTGTTGCGCAACCGCAAGCTCCCGTTGGCCGCCGTCGGCTGCCTGGTCGGGCTGGTGTTGCTCTGGAAATGGGCGGACGTGCGATCGATGTGCTGGGGCGGCAGCAGCAGCAGTGCCCACAGTGCCGGTGTCATGGTGCGAGATGAACAGACGGCGGAAGGTGGAGGCAACTATCGGTACCATCGGAACATGCCGCTAATA TTTATCGGCGGTGTGCCCCGTTCCGGTACCACGCTGATGCGCGCCATGCTAGATGCCCATCCGGAAGTACGCTGCGGTCAGGAAACGCGCGTCATACCACGCATCCTGCAGCTGCGCTCCCACTGGATGAAGTCGGAGAAGGAATCGGTCCGGCTGGTGGAGGCCGGCATCACGAAGGAGGTGCTGAACGGGGCGATCGCCCAGTTCTGTCTCGAGATCATTGCCAAGCACGGCGATCCGGCCCCGCGGCTCTGCAACAAGGATCCGCTCACGCTCAAGATGGGCTCGTACGTGATCGAGCTGTTCCCGGCGGCCAAGTTTCTGTTCATGGTGCGGGAACGGGCGGGCCAC]


>consensus_3699#0 CCGCCCACGCGTCCGCCCACGCGTCCGATCGCCTGCGATCGCTTCCGGGACAAAAGCACG CTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATACA CGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTGAT AAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTTGA CGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCGCACATACGCGAGAGCGGCG TGTTGAATCTTAGCCTCCTAGGAGAAACCGAAGCAACCGAAGCGTACTAGAGAAGGTAGA CATCATGCGGTTAGTGTTGCGCAACCGCAAGCTCCCGTTGGCCGCCGTCGGCTGCCTGGT CGGGCTGGTGTTGCTCTGGAAATGGGCGGACGTGCGATCGATGTGCTGGGGCGGCAGCAG CAGCAGTGCCCACAGTGCCGGTGTCATGGTGCGAGATGAACAGACGGCGGAAGGTGGAGG CAACTATCGGTACCATCGGAACATGCCGCTAATATTTTATCGGCGGTGTGCCCCGTTCCG GTACCACGCTGATGCGCGCCATGCTAGATGCCCATCCGGAAGTACGCTGCGGTCAGGAAA CGCGCGTCATACCACGCATCCTGCAGCTGCGCTCCCACTGGATGAAGTCGGAGAAGGAAT CGGTCCGGCTGGTGGAGGCCGGCATCACGAAGGAGGTGCTGAACGGGGCGATCGCCCAGT TCTGTCTCGAGATCATTGCCAAGCACGGCGATCCGGCCCCGCGGCTCTGCAACAAGGATC CGCTCACGCTCAAGATGGGCTCGTACGTGATCGAGCTGTTCCCGGCGGCCAAGTTTCTGT TCATGGTGCGGGAACGGGCGGGCCAC



consensusID : consensus_3699#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence
                              [CCGGACTTCCCCATCCAGCGTCAACTTCTGCTGCTGTGCCCGGTTGTGCATTGTATCGCCTTTCCAGACCGAGAGCAACCATCAGCAACATCTCGCGAGCGAACCATATCGACGCTTTACCTCCTTCCCCCTTTTCTTCCTTCTCTTCTCTCCCTTCTACTCCCGCGGTCGCCAACGGAGCGCCGGCTACGTCAATTTTGCCAATATATCTTCCAACGCGCGGCGCTCATCACTGGAGCGCTCTGCACGTGCCGGGCGGACCGGGGGAACCGATACAGGCCGAATTAATTGCACAAACGCGTTCGTTCCTTTAGCTTTACCCTTTTAACTATCTTAACTAACAGCGCTGAACTGAAACAAACAAAAAACTGAAGAGAAAAAAAAAACATATCGCCTGCGATCGCTTCCGGGACAAAAGCACGCTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATACACGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTGATAAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTTGACGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCGAGAGCGGCGTGTTGAATCTTAGCCTC]

[+] EMBL BM611910             [CCGGACTTCCCCATCCAGCGTCAACTTCTGCTGCTGTGCCCGGTTGTGCATTGTATCGCCTTTCCAGACCGAGAGCAACCATCAGCAACATCTCGCGAGCGAACCATATCGACGCTTTACCTCCTTCCCCCTTTTCTTCCTTCTCTTCTCTCCCTTCTACTCCCGCGGTCGCCAACGGAGCGCCGGCTACGTCAATTTTGCCAATATATCTTCCAACGCGCGGCGCTCATCACTGGAGCGCTCTGCACGTGCCGGGCGGACCGGGGGAACCGATACAGGCCGAATTAATTGCACAAACGCGTTCGTTCCTTTAGCTTTACCCTTTTAACTATCTTAACTAACAGCGCTGAACTGAAACAAACAAAAAACTGAAGAGAAAAAAAAAACATATCGCCTGCGATCGCTTCCGGGACAAAAGCACGCTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATACACGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTGATAAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTTGACGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCGAGAGCGGCGTGTTGAATCTTAGCCTC]


>consensus_3699#1 CCGGACTTCCCCATCCAGCGTCAACTTCTGCTGCTGTGCCCGGTTGTGCATTGTATCGCC TTTCCAGACCGAGAGCAACCATCAGCAACATCTCGCGAGCGAACCATATCGACGCTTTAC CTCCTTCCCCCTTTTCTTCCTTCTCTTCTCTCCCTTCTACTCCCGCGGTCGCCAACGGAG CGCCGGCTACGTCAATTTTGCCAATATATCTTCCAACGCGCGGCGCTCATCACTGGAGCG CTCTGCACGTGCCGGGCGGACCGGGGGAACCGATACAGGCCGAATTAATTGCACAAACGC GTTCGTTCCTTTAGCTTTACCCTTTTAACTATCTTAACTAACAGCGCTGAACTGAAACAA ACAAAAAACTGAAGAGAAAAAAAAAACATATCGCCTGCGATCGCTTCCGGGACAAAAGCA CGCTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATA CACGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTG ATAAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTT GACGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCGAGAGCGGCGTGTTGAAT CTTAGCCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3699#0      CCGCCCACGCGTCCGCCCACGCGTCCGATCGCCTGCGATCGCTTCCGGGACAAAAGCACG 60
consensus_3699#1      ------------------------------------------------------------
                                                                                  

consensus_3699#0      CTAAGGAAATATTCCGCAAGCAGTTGAAGAACGCGGTCACAAAGAAAAGCGACTAATACA 120
consensus_3699#1      ------------------------------------------------------------
                                                                                  

consensus_3699#0      CGCCAAAACCCCGTTCGTTCGTTTGTTGACCGGGTAAGTGGCTAATCTTTTAAAGCTGAT 180
consensus_3699#1      -------------------------------------------------------CCGGA 5
                                                                             * *  

consensus_3699#0      AAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGCTGGTCCGGGTGCACGTTGA 240
consensus_3699#1      CTTCCCCATCCAGCGTCAACTTCTGCTGCTGTGCCCGGTTGTGCATTGTATCGCCTTT-- 63
                         * ***    **  *  **    **  ***  * *    **    *  *   * **  

consensus_3699#0      CGAAATCGGAACCCGCCGCTTGT--CTACACACAAGCCCCGCGCACATACGCGAGAGCGG 298
consensus_3699#1      CCAGACCGAGAGCAACCATCAGCAACATCTCGCGAGCGAACCATATCGACGCTTTACCTC 123
                      * * * **  * *  **    *   *  * * * ***    *  *   ****   * *  

consensus_3699#0      CGTGTTGAATCTTAGCCTCCTAGGAGAAACCGAA-GCAACCGAAGCGTACTAGAGAAGGT 357
consensus_3699#1      CTTCCCCCTTTTCTTCCTTCTCTTCTCTCCCTTCTACTCCCGCGGTCGCCAACGGAGCGC 183
                      * *      * *   *** **        **     *  ***  *    * *  **  * 

consensus_3699#0      AGACATCATGCGGTTAGTGTTGCGCAACCGCAAGCTCCCGTTGGCCGCCGTCGG--CTGC 415
consensus_3699#1      CGGCTACGT-CAATTTTGCCAATATATCTTCCAACGCGCGGCGCTCATCACTGGAGCGCT 242
                       * *  * * *  **          * *  * * * * **  *  *  *   **  *   

consensus_3699#0      CTGGTCGGGCTGGTGTTGCTCTGGAAATGGGCGGACGTGCGATCGATGTGCTGGGGCGGC 475
consensus_3699#1      CTGCACGTGCCGGGCGGACCGGGGGAACCGATACAGGCCGAATTAAT-TGC-------AC 294
                      ***  ** ** **     *   ** **  *    * *    **  ** ***        *

consensus_3699#0      AGCAGCAGCAGTGCCCACAGTGCCGGTGTCATGGTGCGAGATGAACAGACGGCGGAAGGT 535
consensus_3699#1      AAACGCGTTCGTTCCTTTAGCTTTACCCTTTTA--ACTATCTTAACTAACAGCGCTGAAC 352
                      *   **    ** **   **        *  *    * *  * ***  ** ***      

consensus_3699#0      GGAGGCAACTATCGGTACCATCGGAACATGCCGCTAATATTTTATCGGCGGTGTGCCCCG 595
consensus_3699#1      TGAAACAAACAAAAAACTGAAGAGAAAAAAAA---AACATATCGCCTGCGATCGCTTCCG 409
                       **  ***  *        *   *** *       ** ** *   * *** *     ***

consensus_3699#0      TTCCGGTACCACGCTGATGCGCGCCATGCTAGATGCCCATCCGGAAGTACGCTGCGGTCA 655
consensus_3699#1      GGACAAAAGCACGCTAAGGAA----ATATTCCGCAAGCAGTTG-AAGAACGCGGTCACAA 464
                         *   * ****** * *      **  *       **   * *** **** *     *

consensus_3699#0      GGAAACGCGCGTCATAC-CACGCATCCTGCAGCTGCGCTCCCACTGGATGAAGTCGGAGA 714
consensus_3699#1      AGAAAAGCGACTAATACACGCCAAAACCCCGTTCGTTCGTTTGTTG-ACCGGGTAAGTGG 523
                       **** ***  * **** * *  *  *  *    *  *      ** *    **  * * 

consensus_3699#0      AGGAATCGGTCCGGCTGGTGGAGGCCGGCATCACGAAGGAGGTGCT---GAACGGGGCGA 771
consensus_3699#1      CTAATCTTTTAAAGCTGATAAGCGCCAGAACGCCGCCGCTGTCACTATTGTTTCGGACGC 583
                         *     *   **** *    *** * *   **  *  *   **   *    ** ** 

consensus_3699#0      TCGCCCAGTTCTGTCTCGAGATCATTGCCAAGCACGGCGATCCGGCCCCGCGGCTCTGCA 831
consensus_3699#1      TGGTCCGGGTGCACGTTGACGAAATCGGAACCCGCCGCTTGTCTACACACAAGCCCCGCG 643
                      * * ** * *     * **    ** *  *  * * **    *  * *    ** * ** 

consensus_3699#0      ACAAGGATCCGCTCACGCTCAAGATGGGCTCGTACGTGATCGAGCTGTTCCCGGCGGCCA 891
consensus_3699#1      AGAGCGGCGTGTTGAATCTTAGCCTC---------------------------------- 669
                      * *  *    * * *  ** *   *                                   

consensus_3699#0      AGTTTCTGTTCATGGTGCGGGAACGGGCGGGCCAC 926
consensus_3699#1      -----------------------------------
                                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)