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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence
[CCGGAAGATGCAGATGCTTTAGTTAGGAGGAACCGCCGGGAAGAAACGAACACTGTTATGTACATAGCTGACAACGGAACTATATGGCTTTTTTTGTGTGTGTCTGCGTTAAGATCGGCATAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAGCACCGTTTGTGTATATTTATTTTTAATATATCTCTATGTTATGTTTGTCGTGTGCATTCCTCTTCTGCCCTGTAATACTATTAAAAGATGATCCGATTCCCCCTTCCCTACCCATTACTCTTCTCTACATCTTACCAGCGATAATAGAACGATCGTGCTTCGATGTGTGTCCAATGTTATAAGGGAAAGAGAGAGAGAGAGTGAATGAGGTGCAAATTCGTTTCAGATCGTATTTCACACAATCATTGTTAAATAGCGTTAGGACAGCGAGTGGTAGTACACGCAAGAGGGGGATTAGTCCTAATTGTCTTACTCTATAGTACTAGCCTAGTGCATTCCTTGCCCTCTTCTTAACTCCCCCCCTTAACAATCTCCACCTTTCCAACTTTATCTAGCCCGCGAGGGGGGAGATCATGAATGTGAAAAAAGAAAACATCCTTTCCTGTGTAATAAATAAAGCTGTATAGTAATAATGATGACTTAGTAGGGGAGAGCGCTTCTAGTAGTAGTAGATCCGTGTGACCCGCGGTGGTTGT]
[+] EMBL BM608815 [CCGGAAGATGCAGATGCTTTAGTTAGGAGGAACCGCCGGGAAGAAACGAACACTGTTATGTACATAGCTGACAACGGAACTATATGGCTTTTTTTGTGTGTGTCTGCGTTAAGATCGGCATAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAGCACCGTTTGTGTATATTTATTTTTAATATATCTCTATGTTATGTTTGTCGTGTGCATTCCTCTTCTGCCCTGTAATACTATTAAAAGATGATCCGATTCCCCCTTCCCTACCCATTACTCTTCTCTACATCTTACCAGCGATAATAGAACGATCGTGCTTCGATGTGTGTCCAATGTTATAAGGGAAAGAGAGAGAGAGAGTGAATGAGGTGCAAATTCGTTTCAGATCGTATTTCACACAATCATTGTTAAATAGCGTTAGGACAGCGAGTGGTAGTACACGCAAGAGGGGGATTAGTCCTAATTGTCTTACTCTATAGTACTAGCCTAGTGCATTCCTTGCCCTCTTCTTAACTCCCCCCCTTAACAATCTCCACCTTTCCAACTTTATCTAGCCCGCGAGGGGGGAGATCATGAATGTGAAAAAAGAAAACATCCTTTCCTGTGTAATAAATAAAGCTGTATAGTAATAATGATGACTTAGTAGGGGAGAGCGCTTCTAGTAGTAGTAGATCCGTGTGACCCGCGGTGGTTGT]
[+] EMBL BX618535 [ ACACTGTTATGTACATAGCTGACAACGGAACTATATGGCTTTTTTTGTGTGTGTCTGCGTTAAGATCGGCATAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAGCACCGTTTGTGTATATTTATTTTTAATATATCTCTATGTTATGTTTGTCGTGTGCATTCCTCTTCTGCCCTGTAATACTATTAAAAGATGATCCGATTCCCCCTTCCCTACCCATTACTCTTCTCTACATCTTACCAGCGATAATAGAACGATCGTGCTTCGATGTGTGTCCAATGTTATAAGGGAAAGAGAGAGAGAGAGTGAATGAGGTGCAAATTCGTTTCAGATCGTATTTCACACAATCATTGTTAAATAGCGTTAGGACAGCGAGTGGTAGTACACGCAAGAGGGGGATTAGTCCTAATTGTCTTACTCTATAGTACTAGCCTAGTGCATTCCTTGCCCTCTTCTTAACTCCCCCCCTTAACAATCTCCACCTTTCCAACTTTATCTAGCCCGCGAGGGGGGAGAT ]
consensusID : consensus_3702#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence
[CCGCGGCTTTATCAACCCCCCCTCGGCGTGCCAGTAGAAGCCTAGGGAAGGTTACGGGGTGGCAAAGACAAATGGGGACGCGTGCATCCACTGAGTATTTGAGTTTATTTGTTATTGCTACACGACGCTCTGTTTAGTATAAAATGTGTTGCAAATGCTAATCGATTTGTGTGATTTTAAGCTTATCGTTTGGGAGGGTTTTGTTTCGTTCCTTTTTCCTGTAAAGAACAACGAGATGTAGGATGGGAAGATGCTTTAGTTAGGAGGAACCGCCGGGATGAAACGAACACTGTTATGTACATAGCTGACAACGGAACTATATGGCTTTTTTGTGTGTGTCTGCGTTAAGATCGGCATAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAACACCGCTTGTGGATA]
[+] EMBL BM656994 [CCGCGGCTTTATCAACCCCCCCTCGGCGTGCCAGTAGAAGCCTAGGGAAGGTTACGGGGTGGCAAAGACAAATGGGGACGCGTGCATCCACTGAGTATTTGAGTTTATTTGTTATTGCTACACGACGCTCTGTTTAGTATAAAATGTGTTGCAAATGCTAATCGATTTGTGTGATTTTAAGCTTATCGTTTGGGAGGGTTTTGTTTCGTTCCTTTTTCCTGTAAAGAACAACGAGATGTAGGATGGGAAGATGCTTTAGTTAGGAGGAACCGCCGGGATGAAACGAACACTGTTATGTACATAGCTGACAACGGAACTATATGGCTTTTTTGTGTGTGTCTGCGTTAAGATCGGCATAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAACACCGCTTGTGGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3702#0 CCGGAAGATGCAGATGCTTTAGTTAGGAGGAACCGCCGGGAAGAAACGAACACTGTTATG 60
consensus_3702#1 ------------------------------------------------------------
consensus_3702#0 TACATAGCTGACAACGGAACTATATGGCTTTTTTTGTGTGTGTCTGCGTTAAGATCGGCA 120
consensus_3702#1 ------------------------------------------------------------
consensus_3702#0 TAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCC 180
consensus_3702#1 ----CCGCGGC-TTTATCAACCCCC------CCTCGGCGTGCCA-GTAGAAGCCTAGGGA 48
* * ***** ** **** ** * *** * ** ** *
consensus_3702#0 GAAGCACCGTTTGTGTATATTTATTTTTAATATATCTCTATGTTATGTTTGTCGTGTGCA 240
consensus_3702#1 AGGTTACGGGGTGGCAAAGACAAATGGGGACGCGTGCATCCACTGAGTAT-TTGAGTTTA 107
** * ** * * * * * * * ** * * * ** *
consensus_3702#0 TTCCTCTTCTGCCCTGTAATACTAT-TAAAAGATGATCCGATTCCCCCTTCCCTACCCAT 299
consensus_3702#1 TTTGT-TATTGCTACACGACGCTCTGTTTAGTATAAAATGTGTTGCAAATGCTAATCGAT 166
** * * *** * ** * * * ** * * * * * * * * **
consensus_3702#0 TACTCTTCTCTACATCTTACCAGCGATAATAGAACGATCGTGCTTCGATGTGTGTCCAAT 359
consensus_3702#1 TTGTGTGATTTTAAGCTTATCGTT-----TGGGAGGGTTTTGTTTCGTTCCTTTTTC--- 218
* * * * * * **** * * * * * * ** **** * * * *
consensus_3702#0 GTTATAAGGGAAAGAGAGAGAGAGAGTGAATGAGGTGCAAATTCGTTTCAGATCGTATTT 419
consensus_3702#1 -CTGTAAAGAACAACGAGATGTAGGATGGG-AAGATGC--------TTTAGTTAGGA--- 265
* *** * * * **** ** ** ** *** ** ** * * *
consensus_3702#0 CACACAATCATTGTTAAATAGCGTTAGGACAGCGAGTGGTAGTACACGCAAGAGGGGGAT 479
consensus_3702#1 ---GGAACCGCCG--GGATGAAACGAACACTGTTATGTACATAGCTGACAACGGAACTAT 320
** * * ** * ** * * * * *** * **
consensus_3702#0 TAGTCCTAATTGTCTTACTCTATAGTACTAGCCTAGTGCATTCCTTGCCCTCTTCTTAAC 539
consensus_3702#1 ATGGCTTTTTTGTGTGTGTCTGCGTTA--AGATCGGCATAATTCATATCATTTATTAAGC 378
* * * **** * *** ** ** * * * * * * * * * * *
consensus_3702#0 TCCCCCCCTTAACAATCTCCACCTTTCCAACTTTATCTAGCCCGCGAGGGGGGAGATCAT 599
consensus_3702#1 CCC--------ATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAACACCGCTTGT 430
** * * ** ** * * ** * * ** * * *
consensus_3702#0 GAATGTGAAAAAAGAAAACATCCTTTCCTGTGTAATAAATAAAGCTGTATAGTAATAATG 659
consensus_3702#1 GGATA------------------------------------------------------- 435
* **
consensus_3702#0 ATGACTTAGTAGGGGAGAGCGCTTCTAGTAGTAGTAGATCCGTGTGACCCGCGGTGGTTG 719
consensus_3702#1 ------------------------------------------------------------
consensus_3702#0 T 720
consensus_3702#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||