cluster # 3705

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Anopheles gambiae
cluster # 3705 cluster # 3705 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3705#0 length = 336 sequences # 1

consensus_3705#1 length = 299 sequences # 2

consensusID : consensus_3705#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [CCGTAAAGTTAACTGCTAAATCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTGGCGCTACTTGCGTTGCTTGCTTTCGTGGGTGCTGGGGAAATGTACGTAACGGATAAAGTTGATCCTCCACCGTTCGATCCAGACGATGAAAGCTTCTATGACGGATGCCTTGAAGGGACTAATCCTCACGTTTGGTGCTAAGTCATGAAAAAAGGGAAAATTACAATAATCCACGTCAGTACATGAAATCAGATTCCAAGGATTTGAATGTAAAAAGCTTCTTGTAAACACGAATTTAATTTAAACTGAAATAATTAAAGATTTATGAAATCAGGCT]

[+] EMBL BM608634             [CCGTAAAGTTAACTGCTAAATCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTGGCGCTACTTGCGTTGCTTGCTTTCGTGGGTGCTGGGGAAATGTACGTAACGGATAAAGTTGATCCTCCACCGTTCGATCCAGACGATGAAAGCTTCTATGACGGATGCCTTGAAGGGACTAATCCTCACGTTTGGTGCTAAGTCATGAAAAAAGGGAAAATTACAATAATCCACGTCAGTACATGAAATCAGATTCCAAGGATTTGAATGTAAAAAGCTTCTTGTAAACACGAATTTAATTTAAACTGAAATAATTAAAGATTTATGAAATCAGGCT]




>consensus_3705#0
CCGTAAAGTTAACTGCTAAATCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTGG
CGCTACTTGCGTTGCTTGCTTTCGTGGGTGCTGGGGAAATGTACGTAACGGATAAAGTTG
ATCCTCCACCGTTCGATCCAGACGATGAAAGCTTCTATGACGGATGCCTTGAAGGGACTA
ATCCTCACGTTTGGTGCTAAGTCATGAAAAAAGGGAAAATTACAATAATCCACGTCAGTA
CATGAAATCAGATTCCAAGGATTTGAATGTAAAAAGCTTCTTGTAAACACGAATTTAATT
TAAACTGAAATAATTAAAGATTTATGAAATCAGGCT

consensusID : consensus_3705#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 299
fasta sequence

                              [CCGCAAAATTCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTGGCGTTACTCGCGCTGGTTGCTTTCGTGGGTGCTAGGGAAATGCCCGTAACGGAAAAAGTTGATCCTCCCCCTTTCGAACCTGACGGATACATTCATCCGACAGATTACGGAATATAATAATAGAGATGGTATTACTAACGTTTGGTGCCTCTATGAAAACTCCAAGTTAGTACATGTAGTCAGATACCAATGATTCGAAGATGATATGTTGCTTGTAAACACGAATTGAATGAAACTGAGATAA--AAATTCG]

[+] EMBL BM622711             [CCGCAAAATTCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTGGCGTTACTCGCGCTGGTTGCTTTCGTGGGTGCTAGGGAAATGCCCGTAACGGAAAAAGTTGATCCTCCCCCTTTCGAACCTGACGGATACATTCATCCGACAGATTACGGAATATAATAATAGAGATGGTATTACTAACGTTTGGTGCCTCTATGAAAACTCCAAGTTAGTACATGTAGTCAGATACCAATGATTCGAAGATGATATGTTGCTTGTAAACACGAATTGAATGAAACTGAGATAA  AAATTCG]
[+] EMBL BM624260             [                                                                                                                                                                                                                 CCGAGTTAGTACATGTAGTCAGATACCAATGATTCGAAGATGATATGTTGCTTGTAAACACGAATTGAATGAAACTGAGATAATTAACTTCG]




>consensus_3705#1
CCGCAAAATTCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTGGCGTTACTCGCG
CTGGTTGCTTTCGTGGGTGCTAGGGAAATGCCCGTAACGGAAAAAGTTGATCCTCCCCCT
TTCGAACCTGACGGATACATTCATCCGACAGATTACGGAATATAATAATAGAGATGGTAT
TACTAACGTTTGGTGCCTCTATGAAAACTCCAAGTTAGTACATGTAGTCAGATACCAATG
ATTCGAAGATGATATGTTGCTTGTAAACACGAATTGAATGAAACTGAGATAAAAATTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3705#0      CCGTAAAGTTAACTGCTAAAT-CATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTG 59
consensus_3705#1      ------------CCGCAAAATTCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTG 48
                                  * ** **** **************************************

consensus_3705#0      GCGCTACTTGCGTTGCTTGCTTTCGTGGGTGCTGGGGAAATGTACGTAACGGATAAAGTT 119
consensus_3705#1      GCGTTACTCGCGCTGGTTGCTTTCGTGGGTGCTAGGGAAATGCCCGTAACGGAAAAAGTT 108
                      *** **** *** ** ***************** ********  ********* ******

consensus_3705#0      GATCCTCCACCGTTCGATCCAGACGATGAAAGCTTCTATGACGGATGCCTTGAAGGGACT 179
consensus_3705#1      GATCCTCCCCCTTTCGAACCTGACGG-ATACATTCATCCGACAGATTACG-GAATATAAT 166
                      ******** ** ***** ** ****    *   *  *  *** ***  *  ***   * *

consensus_3705#0      AATCCTCACGTTTGGTGCTAAGTCATGAAAAAAGGGAAAATTACAATAA-TCCACGTCAG 238
consensus_3705#1      AAT----AGAGATGGTATTAC----TAACGTTTGGTGCCTCTATGAAAACTCCAAGTTAG 218
                      ***    *    ****  **     * *     **      **  * ** **** ** **

consensus_3705#0      TACATGAAATCAGATTCCAAGGATTTGAATGTAAAAAGCTTCTTGTAAACACGAATTTAA 298
consensus_3705#1      TACATGTAGTCAGATACCAATGATTCGAAGATGATATGTTGCTTGTAAACACGAATTGAA 278
                      ****** * ****** **** **** ***  * * * * * **************** **

consensus_3705#0      TTTAAACTGAAATAATTAAAGATTTATGAAATCAGGCT 336
consensus_3705#1      TG-AAACTGAGAT----AAAAATTCG------------ 299
                      *  ******* **    *** ***