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Anopheles gambiae
cluster # 3706 cluster # 3706       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3706#0 length = 1089 sequences # 1  
consensus_3706#1 length = 544 sequences # 1  
consensus_3706#2 length = 515 sequences # 1  

consensusID : consensus_3706#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1089
fasta sequence
                              [AGATCGCCCGACGGTTTATCGGATGATAAAGGAAACATTACTGCTCNGTTGGNTATTATTGGTTGTGCCGCGGACAAANAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGATAACTGGCGACAGCTGACGGATTTCTCCCCCATCACAACGTGAATGTACCACAGTACTTTGTACGTGCTACGGCGGACAAAGGTTNCAGAGCAGACATGTCCTGATCANAACATATTTCGNTCCAATNAATTNNGTTATGCGACATTCCTGGGAATGTAGACTTGCGTCGTGAACAAGCTGCCTCACCGAATGANAGATTGTATATCTGCCCTGTTAATGGCGTCATGTAGCAGTACTTCATCACGATGCGATATGGTGTGAGATGGCGTNTATGCAAAGTTCATGCCNGACAGAGCATTGTTTTGTTAGTATCCAGCACTGACTAAGAATGTAATATTGGGAGAAGCGAGGGTAATAAGCGATAGTGAAATCCCTGCGACACAAACACCGACGAGNACCCTCTCTATCCTGGAAATACTATCCAACAGCCGAGGAAANCTGCACCACAGAGTATATCCTATGTTATGAATGCGCGACGGNATCTGTCCGGTCGAAAGCGCTCCAGGAGCTGTTCTNCTGAANTGACAGGCAAACGAGCTTGCTGTAGCTGGGCTTGGAGGGTCGATGGCTGGCCCNAGATGAAANTTGCTACCGAAGACCACCCCCGCNANACTCGAAAACNAANCAAGCCGCGCNTCACGGCCANACACNGCAAGCATCGCGGCNCTNAGGGCGACACGNCACGCACCGAAACNCCGCNGGACATGNCACAACAAGAGACCNCCGGAACCCACGCCAAGAAGACGNNCACCGTNAACACNACAAGCAATGTCACACAAGCCGCAGGTACCCAAACNGGAAAAGCAGGCGTCNACGACAAACACGGCAACAAAACAACACAACGACAAACAAAACCGNCNGTTAGNGNCANCAAAGACAACACCTCAAANGAAGGCAAAACCAACGGGAAAGCCGCACACACGCNACGGNAACCGTGGCCCACAACAGTAACCCATTGCACAGGAAAAAG]

[+] EMBL AL930954             [AGATCGCCCGACGGTTTATCGGATGATAAAGGAAACATTACTGCTCNGTTGGNTATTATTGGTTGTGCCGCGGACAAANAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGATAACTGGCGACAGCTGACGGATTTCTCCCCCATCACAACGTGAATGTACCACAGTACTTTGTACGTGCTACGGCGGACAAAGGTTNCAGAGCAGACATGTCCTGATCANAACATATTTCGNTCCAATNAATTNNGTTATGCGACATTCCTGGGAATGTAGACTTGCGTCGTGAACAAGCTGCCTCACCGAATGANAGATTGTATATCTGCCCTGTTAATGGCGTCATGTAGCAGTACTTCATCACGATGCGATATGGTGTGAGATGGCGTNTATGCAAAGTTCATGCCNGACAGAGCATTGTTTTGTTAGTATCCAGCACTGACTAAGAATGTAATATTGGGAGAAGCGAGGGTAATAAGCGATAGTGAAATCCCTGCGACACAAACACCGACGAGNACCCTCTCTATCCTGGAAATACTATCCAACAGCCGAGGAAANCTGCACCACAGAGTATATCCTATGTTATGAATGCGCGACGGNATCTGTCCGGTCGAAAGCGCTCCAGGAGCTGTTCTNCTGAANTGACAGGCAAACGAGCTTGCTGTAGCTGGGCTTGGAGGGTCGATGGCTGGCCCNAGATGAAANTTGCTACCGAAGACCACCCCCGCNANACTCGAAAACNAANCAAGCCGCGCNTCACGGCCANACACNGCAAGCATCGCGGCNCTNAGGGCGACACGNCACGCACCGAAACNCCGCNGGACATGNCACAACAAGAGACCNCCGGAACCCACGCCAAGAAGACGNNCACCGTNAACACNACAAGCAATGTCACACAAGCCGCAGGTACCCAAACNGGAAAAGCAGGCGTCNACGACAAACACGGCAACAAAACAACACAACGACAAACAAAACCGNCNGTTAGNGNCANCAAAGACAACACCTCAAANGAAGGCAAAACCAACGGGAAAGCCGCACACACGCNACGGNAACCGTGGCCCACAACAGTAACCCATTGCACAGGAAAAAG]


>consensus_3706#0 AGATCGCCCGACGGTTTATCGGATGATAAAGGAAACATTACTGCTCNGTTGGNTATTATT GGTTGTGCCGCGGACAAANAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGATA ACTGGCGACAGCTGACGGATTTCTCCCCCATCACAACGTGAATGTACCACAGTACTTTGT ACGTGCTACGGCGGACAAAGGTTNCAGAGCAGACATGTCCTGATCANAACATATTTCGNT CCAATNAATTNNGTTATGCGACATTCCTGGGAATGTAGACTTGCGTCGTGAACAAGCTGC CTCACCGAATGANAGATTGTATATCTGCCCTGTTAATGGCGTCATGTAGCAGTACTTCAT CACGATGCGATATGGTGTGAGATGGCGTNTATGCAAAGTTCATGCCNGACAGAGCATTGT TTTGTTAGTATCCAGCACTGACTAAGAATGTAATATTGGGAGAAGCGAGGGTAATAAGCG ATAGTGAAATCCCTGCGACACAAACACCGACGAGNACCCTCTCTATCCTGGAAATACTAT CCAACAGCCGAGGAAANCTGCACCACAGAGTATATCCTATGTTATGAATGCGCGACGGNA TCTGTCCGGTCGAAAGCGCTCCAGGAGCTGTTCTNCTGAANTGACAGGCAAACGAGCTTG CTGTAGCTGGGCTTGGAGGGTCGATGGCTGGCCCNAGATGAAANTTGCTACCGAAGACCA CCCCCGCNANACTCGAAAACNAANCAAGCCGCGCNTCACGGCCANACACNGCAAGCATCG CGGCNCTNAGGGCGACACGNCACGCACCGAAACNCCGCNGGACATGNCACAACAAGAGAC CNCCGGAACCCACGCCAAGAAGACGNNCACCGTNAACACNACAAGCAATGTCACACAAGC CGCAGGTACCCAAACNGGAAAAGCAGGCGTCNACGACAAACACGGCAACAAAACAACACA ACGACAAACAAAACCGNCNGTTAGNGNCANCAAAGACAACACCTCAAANGAAGGCAAAAC CAACGGGAAAGCCGCACACACGCNACGGNAACCGTGGCCCACAACAGTAACCCATTGCAC AGGAAAAAG



consensusID : consensus_3706#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence
                              [GGCACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAATTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAATTGTATATCTGCCCGTTAATGGCTCATGTACAGACTTCATACGATGCATTGGTGGAGTGGCTTATGAAAGTTCATGCCAGCCAGGCTTGTTTTTTGATCCAGCACTACAAGAATGTAATTTGGAAAGCGAGGTAGATTGCGTAGTAAATCCCTGCACACAACCACCGCCAGACCCTCCTATCCTGGAAATCTATCCAAACCCAGGAAACTGCAAAGAGTATATCCTATGTTTGAATGGCGAAGGAATTGTTCGGCAATGCGCTCCAGGACTGTTCTTTGATGAGCAGGCAACGAGTTGTGTAGCTGGCTTTGAG]

[+] EMBL BX623318             [GGCACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAATTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAATTGTATATCTGCCCGTTAATGGCTCATGTACAGACTTCATACGATGCATTGGTGGAGTGGCTTATGAAAGTTCATGCCAGCCAGGCTTGTTTTTTGATCCAGCACTACAAGAATGTAATTTGGAAAGCGAGGTAGATTGCGTAGTAAATCCCTGCACACAACCACCGCCAGACCCTCCTATCCTGGAAATCTATCCAAACCCAGGAAACTGCAAAGAGTATATCCTATGTTTGAATGGCGAAGGAATTGTTCGGCAATGCGCTCCAGGACTGTTCTTTGATGAGCAGGCAACGAGTTGTGTAGCTGGCTTTGAG]


>consensus_3706#1 GGCACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGAAACGGCGACAGC TGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTAA AGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAATTAATTTGTTATGCGA CATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAATTGTATATCT GCCCGTTAATGGCTCATGTACAGACTTCATACGATGCATTGGTGGAGTGGCTTATGAAAG TTCATGCCAGCCAGGCTTGTTTTTTGATCCAGCACTACAAGAATGTAATTTGGAAAGCGA GGTAGATTGCGTAGTAAATCCCTGCACACAACCACCGCCAGACCCTCCTATCCTGGAAAT CTATCCAAACCCAGGAAACTGCAAAGAGTATATCCTATGTTTGAATGGCGAAGGAATTGT TCGGCAATGCGCTCCAGGACTGTTCTTTGATGAGCAGGCAACGAGTTGTGTAGCTGGCTT TGAG



consensusID : consensus_3706#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence
                              [ACCCGCACTTAGGCTATTATTGGTTGTGCCGCGGTACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGATGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTGAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAAGTTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAACTTGTATATCTGACACCGTTAACTGGCTCATGGTACACGACTTCATACGATGCACTTGGTGGAGTGGCTTATGAAAGTTCATGCCANGCCAGAGTCTTGTTTANATTGATCCNAGCACTACTAGAGAATGTAATTTGGACAAGCGAGGTAGATTGCGTAGTAAANTCCCTGGGACAACAATGCANCGGGCAGANACCTACCTATCCTGGAAAGTCTATCCAAAGCCAGGAAACTGCNAAGAGTATATCCT]

[+] EMBL AL692735             [ACCCGCACTTAGGCTATTATTGGTTGTGCCGCGGTACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGATGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTGAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAAGTTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAACTTGTATATCTGACACCGTTAACTGGCTCATGGTACACGACTTCATACGATGCACTTGGTGGAGTGGCTTATGAAAGTTCATGCCANGCCAGAGTCTTGTTTANATTGATCCNAGCACTACTAGAGAATGTAATTTGGACAAGCGAGGTAGATTGCGTAGTAAANTCCCTGGGACAACAATGCANCGGGCAGANACCTACCTATCCTGGAAAGTCTATCCAAAGCCAGGAAACTGCNAAGAGTATATCCT]


>consensus_3706#2 ACCCGCACTTAGGCTATTATTGGTTGTGCCGCGGTACAAACAACTACAACTCAGTCTCCA GCGAGTGATCCATGATGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGA ATGTACCAAGTACTTTTCGTGCTACGGCGGTGAAAGGTTACGAGCAGACATGTCCTGATC AAAAATATTTCGATCCAAGTTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTC GTGAACAACTGCCCACCGAATGAAACTTGTATATCTGACACCGTTAACTGGCTCATGGTA CACGACTTCATACGATGCACTTGGTGGAGTGGCTTATGAAAGTTCATGCCANGCCAGAGT CTTGTTTANATTGATCCNAGCACTACTAGAGAATGTAATTTGGACAAGCGAGGTAGATTG CGTAGTAAANTCCCTGGGACAACAATGCANCGGGCAGANACCTACCTATCCTGGAAAGTC TATCCAAAGCCAGGAAACTGCNAAGAGTATATCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3706#0      AGATCGCCCGACGGTTTATCGGATGATAAAGGAAACATTACTGCTCNGTTGGNTATTATT 60
consensus_3706#1      ------------------------------------------------------------
consensus_3706#2      ---------------------------------------ACCCGCACTTAGGCTATTATT 21
                                                                                  

consensus_3706#0      GGTTGTGCCGCGG-ACAAANAACTACAACTCAGTCTCCAGCGAGTGATCCATG-TGTGGA 118
consensus_3706#1      ----------GGC-ACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATG-TGTGG- 47
consensus_3706#2      GGTTGTGCCGCGGTACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGATGTGG- 80
                                 *  ***** ********************************* ***** 

consensus_3706#0      TAACTGGCGACAGCTGACGGATTTCTCCCCCATCACAACGTGAATGTACCACAGTACTTT 178
consensus_3706#1      -AAACGGCGACAGCTGACGGATTTCTCCCCCATC-CAAC-TGAATGTACCA-AGTACTTT 103
consensus_3706#2      -AAACGGCGACAGCTGACGGATTTCTCCCCCATC-CAAC-TGAATGTACCA-AGTACTTT 136
                       **  ***************************** **** *********** ********

consensus_3706#0      GTACGTGCTACGGCGGACAAAGGTTNCAGAGCAGACATGTCCTGATCANAACATATTTCG 238
consensus_3706#1      --TCGTGCTACGGCGG-TAAAGGTTAC-GAGCAGACATGTCCTGATCAAAA-ATATTTCG 158
consensus_3706#2      --TCGTGCTACGGCGGTGAAAGGTTAC-GAGCAGACATGTCCTGATCAAAA-ATATTTCG 192
                         *************  ******* * ******************** ** ********

consensus_3706#0      NTCCAATNAATTNNGTTATGCGACATTCCTGGGAATGTAGACTTGCGTCGTGAACAAGCT 298
consensus_3706#1      ATCCAATTAATTTG-TTATGCGACATTCCTGAGAATGTAGACT-GCGTCGTGAACAA-CT 215
consensus_3706#2      ATCCAAGTTAATTTGTTATGCGACATTCCTGAGAATGTAGACT-GCGTCGTGAACAA-CT 250
                       *****   * *   **************** *********** ************* **

consensus_3706#0      GCCTCACCGAATGANAGATTGTATATCTGCC-CTGTTAATGGCGTCATGTAGCAGTACTT 357
consensus_3706#1      GCC-CACCGAATGAAA--TTGTATATCTGCC-C-GTTAATGGC-TCATGTA-CAG-ACTT 267
consensus_3706#2      GCC-CACCGAATGAAAC-TTGTATATCTGACACCGTTAACTGGCTCATGGTACACGACTT 308
                      *** ********** *  *********** * * *****  *  *****   **  ****

consensus_3706#0      CATCACGATGCGATATGGTGTGAGATGGCGTNTATGCAAAGTTCATGCCNG-ACAGAGCA 416
consensus_3706#1      CAT-ACGATGCATTG----GTGGAGTGGCTTATG---AAAGTTCATGCCAG-CCAGGCTT 318
consensus_3706#2      CAT-ACGATGCACTTG---GTGGAGTGGCTTATG---AAAGTTCATGCCANGCCAGAGTC 361
                      *** *******  *     ***   **** * *    ************    ***    

consensus_3706#0      TTGTTTTGTTAGTATCCAGCACTGACTAAGAATGTAATATTGGGAGAAGCGAGGGTAATA 476
consensus_3706#1      GTTTTTTG-----ATCCAGCACTA--CAAGAATGTAATTT---GGAAAGCGAGGTAGATT 368
consensus_3706#2      TTGTTTANATTGATCCNAGCACTACTAGAGAATGTAATTT--GGACAAGCGAGGTAGATT 419
                       * ***         * ******     ********** *   *  ********   ** 

consensus_3706#0      AGCGATAGTGAAATCCCTGCGACA-CAA-ACACCGACGAGNACCCTCTCTATCCTGGAAA 534
consensus_3706#1      -GCG-TAGT-AAATCCCTGC-ACA-CAA-CCACCGCCA--GACCCTC-CTATCCTGGAAA 419
consensus_3706#2      -GCG-TAGTAAANTCCCTGGGACAACAATGCANCGGGCAGANACCTACCTATCCTGGAAA 477
                       *** **** ** ******  *** ***  ** **        ***  ************

consensus_3706#0      TACTATCCAACAGCCGAGGAAANCTGCACCACAGAGTATATCCTATGTTATGAATGCGCG 594
consensus_3706#1      T-CTATCCAA--ACCCAGGAAACTG----CAAAGAGTATATCCTATGTT-TGAATG-GCG 470
consensus_3706#2      GTCTATCCAA--AGCCAGGAAACTG----CNAAGAGTATATCCT---------------- 515
                        ********    * ******       *  ************                

consensus_3706#0      ACGGNATCTGTCCGGTCGAAAGCGCTCCAGGAGCTGTTCTNCTGAANTGACAGGCAAACG 654
consensus_3706#1      AAGGAAT-TGTTCGGC--AATGCGCTCCAGGA-CTGTTCTTT--GATGAGCAGGCAA-CG 523
consensus_3706#2      ------------------------------------------------------------
                                                                                  

consensus_3706#0      AGCTTGCTGTAGCTGGGCTTGGAGGGTCGATGGCTGGCCCNAGATGAAANTTGCTACCGA 714
consensus_3706#1      AGTT--GTGTAGCTGGCTTTGAG------------------------------------- 544
consensus_3706#2      ------------------------------------------------------------
                                                                                  

consensus_3706#0      AGACCACCCCCGCNANACTCGAAAACNAANCAAGCCGCGCNTCACGGCCANACACNGCAA 774
consensus_3706#1      ------------------------------------------------------------
consensus_3706#2      ------------------------------------------------------------
                                                                                  

consensus_3706#0      GCATCGCGGCNCTNAGGGCGACACGNCACGCACCGAAACNCCGCNGGACATGNCACAACA 834
consensus_3706#1      ------------------------------------------------------------
consensus_3706#2      ------------------------------------------------------------
                                                                                  

consensus_3706#0      AGAGACCNCCGGAACCCACGCCAAGAAGACGNNCACCGTNAACACNACAAGCAATGTCAC 894
consensus_3706#1      ------------------------------------------------------------
consensus_3706#2      ------------------------------------------------------------
                                                                                  

consensus_3706#0      ACAAGCCGCAGGTACCCAAACNGGAAAAGCAGGCGTCNACGACAAACACGGCAACAAAAC 954
consensus_3706#1      ------------------------------------------------------------
consensus_3706#2      ------------------------------------------------------------
                                                                                  

consensus_3706#0      AACACAACGACAAACAAAACCGNCNGTTAGNGNCANCAAAGACAACACCTCAAANGAAGG 1014
consensus_3706#1      ------------------------------------------------------------
consensus_3706#2      ------------------------------------------------------------
                                                                                  

consensus_3706#0      CAAAACCAACGGGAAAGCCGCACACACGCNACGGNAACCGTGGCCCACAACAGTAACCCA 1074
consensus_3706#1      ------------------------------------------------------------
consensus_3706#2      ------------------------------------------------------------
                                                                                  

consensus_3706#0      TTGCACAGGAAAAAG 1089
consensus_3706#1      ---------------
consensus_3706#2      ---------------
                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)