These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1089 fasta sequence [AGATCGCCCGACGGTTTATCGGATGATAAAGGAAACATTACTGCTCNGTTGGNTATTATTGGTTGTGCCGCGGACAAANAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGATAACTGGCGACAGCTGACGGATTTCTCCCCCATCACAACGTGAATGTACCACAGTACTTTGTACGTGCTACGGCGGACAAAGGTTNCAGAGCAGACATGTCCTGATCANAACATATTTCGNTCCAATNAATTNNGTTATGCGACATTCCTGGGAATGTAGACTTGCGTCGTGAACAAGCTGCCTCACCGAATGANAGATTGTATATCTGCCCTGTTAATGGCGTCATGTAGCAGTACTTCATCACGATGCGATATGGTGTGAGATGGCGTNTATGCAAAGTTCATGCCNGACAGAGCATTGTTTTGTTAGTATCCAGCACTGACTAAGAATGTAATATTGGGAGAAGCGAGGGTAATAAGCGATAGTGAAATCCCTGCGACACAAACACCGACGAGNACCCTCTCTATCCTGGAAATACTATCCAACAGCCGAGGAAANCTGCACCACAGAGTATATCCTATGTTATGAATGCGCGACGGNATCTGTCCGGTCGAAAGCGCTCCAGGAGCTGTTCTNCTGAANTGACAGGCAAACGAGCTTGCTGTAGCTGGGCTTGGAGGGTCGATGGCTGGCCCNAGATGAAANTTGCTACCGAAGACCACCCCCGCNANACTCGAAAACNAANCAAGCCGCGCNTCACGGCCANACACNGCAAGCATCGCGGCNCTNAGGGCGACACGNCACGCACCGAAACNCCGCNGGACATGNCACAACAAGAGACCNCCGGAACCCACGCCAAGAAGACGNNCACCGTNAACACNACAAGCAATGTCACACAAGCCGCAGGTACCCAAACNGGAAAAGCAGGCGTCNACGACAAACACGGCAACAAAACAACACAACGACAAACAAAACCGNCNGTTAGNGNCANCAAAGACAACACCTCAAANGAAGGCAAAACCAACGGGAAAGCCGCACACACGCNACGGNAACCGTGGCCCACAACAGTAACCCATTGCACAGGAAAAAG] [+] EMBL AL930954 [AGATCGCCCGACGGTTTATCGGATGATAAAGGAAACATTACTGCTCNGTTGGNTATTATTGGTTGTGCCGCGGACAAANAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGATAACTGGCGACAGCTGACGGATTTCTCCCCCATCACAACGTGAATGTACCACAGTACTTTGTACGTGCTACGGCGGACAAAGGTTNCAGAGCAGACATGTCCTGATCANAACATATTTCGNTCCAATNAATTNNGTTATGCGACATTCCTGGGAATGTAGACTTGCGTCGTGAACAAGCTGCCTCACCGAATGANAGATTGTATATCTGCCCTGTTAATGGCGTCATGTAGCAGTACTTCATCACGATGCGATATGGTGTGAGATGGCGTNTATGCAAAGTTCATGCCNGACAGAGCATTGTTTTGTTAGTATCCAGCACTGACTAAGAATGTAATATTGGGAGAAGCGAGGGTAATAAGCGATAGTGAAATCCCTGCGACACAAACACCGACGAGNACCCTCTCTATCCTGGAAATACTATCCAACAGCCGAGGAAANCTGCACCACAGAGTATATCCTATGTTATGAATGCGCGACGGNATCTGTCCGGTCGAAAGCGCTCCAGGAGCTGTTCTNCTGAANTGACAGGCAAACGAGCTTGCTGTAGCTGGGCTTGGAGGGTCGATGGCTGGCCCNAGATGAAANTTGCTACCGAAGACCACCCCCGCNANACTCGAAAACNAANCAAGCCGCGCNTCACGGCCANACACNGCAAGCATCGCGGCNCTNAGGGCGACACGNCACGCACCGAAACNCCGCNGGACATGNCACAACAAGAGACCNCCGGAACCCACGCCAAGAAGACGNNCACCGTNAACACNACAAGCAATGTCACACAAGCCGCAGGTACCCAAACNGGAAAAGCAGGCGTCNACGACAAACACGGCAACAAAACAACACAACGACAAACAAAACCGNCNGTTAGNGNCANCAAAGACAACACCTCAAANGAAGGCAAAACCAACGGGAAAGCCGCACACACGCNACGGNAACCGTGGCCCACAACAGTAACCCATTGCACAGGAAAAAG] consensusID : consensus_3706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [GGCACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAATTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAATTGTATATCTGCCCGTTAATGGCTCATGTACAGACTTCATACGATGCATTGGTGGAGTGGCTTATGAAAGTTCATGCCAGCCAGGCTTGTTTTTTGATCCAGCACTACAAGAATGTAATTTGGAAAGCGAGGTAGATTGCGTAGTAAATCCCTGCACACAACCACCGCCAGACCCTCCTATCCTGGAAATCTATCCAAACCCAGGAAACTGCAAAGAGTATATCCTATGTTTGAATGGCGAAGGAATTGTTCGGCAATGCGCTCCAGGACTGTTCTTTGATGAGCAGGCAACGAGTTGTGTAGCTGGCTTTGAG] [+] EMBL BX623318 [GGCACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAATTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAATTGTATATCTGCCCGTTAATGGCTCATGTACAGACTTCATACGATGCATTGGTGGAGTGGCTTATGAAAGTTCATGCCAGCCAGGCTTGTTTTTTGATCCAGCACTACAAGAATGTAATTTGGAAAGCGAGGTAGATTGCGTAGTAAATCCCTGCACACAACCACCGCCAGACCCTCCTATCCTGGAAATCTATCCAAACCCAGGAAACTGCAAAGAGTATATCCTATGTTTGAATGGCGAAGGAATTGTTCGGCAATGCGCTCCAGGACTGTTCTTTGATGAGCAGGCAACGAGTTGTGTAGCTGGCTTTGAG] consensusID : consensus_3706#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [ACCCGCACTTAGGCTATTATTGGTTGTGCCGCGGTACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGATGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTGAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAAGTTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAACTTGTATATCTGACACCGTTAACTGGCTCATGGTACACGACTTCATACGATGCACTTGGTGGAGTGGCTTATGAAAGTTCATGCCANGCCAGAGTCTTGTTTANATTGATCCNAGCACTACTAGAGAATGTAATTTGGACAAGCGAGGTAGATTGCGTAGTAAANTCCCTGGGACAACAATGCANCGGGCAGANACCTACCTATCCTGGAAAGTCTATCCAAAGCCAGGAAACTGCNAAGAGTATATCCT] [+] EMBL AL692735 [ACCCGCACTTAGGCTATTATTGGTTGTGCCGCGGTACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGATGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTGAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAAGTTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAACTTGTATATCTGACACCGTTAACTGGCTCATGGTACACGACTTCATACGATGCACTTGGTGGAGTGGCTTATGAAAGTTCATGCCANGCCAGAGTCTTGTTTANATTGATCCNAGCACTACTAGAGAATGTAATTTGGACAAGCGAGGTAGATTGCGTAGTAAANTCCCTGGGACAACAATGCANCGGGCAGANACCTACCTATCCTGGAAAGTCTATCCAAAGCCAGGAAACTGCNAAGAGTATATCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3706#0 AGATCGCCCGACGGTTTATCGGATGATAAAGGAAACATTACTGCTCNGTTGGNTATTATT 60 consensus_3706#1 ------------------------------------------------------------ consensus_3706#2 ---------------------------------------ACCCGCACTTAGGCTATTATT 21 consensus_3706#0 GGTTGTGCCGCGG-ACAAANAACTACAACTCAGTCTCCAGCGAGTGATCCATG-TGTGGA 118 consensus_3706#1 ----------GGC-ACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATG-TGTGG- 47 consensus_3706#2 GGTTGTGCCGCGGTACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGATGTGG- 80 * ***** ********************************* ***** consensus_3706#0 TAACTGGCGACAGCTGACGGATTTCTCCCCCATCACAACGTGAATGTACCACAGTACTTT 178 consensus_3706#1 -AAACGGCGACAGCTGACGGATTTCTCCCCCATC-CAAC-TGAATGTACCA-AGTACTTT 103 consensus_3706#2 -AAACGGCGACAGCTGACGGATTTCTCCCCCATC-CAAC-TGAATGTACCA-AGTACTTT 136 ** ***************************** **** *********** ******** consensus_3706#0 GTACGTGCTACGGCGGACAAAGGTTNCAGAGCAGACATGTCCTGATCANAACATATTTCG 238 consensus_3706#1 --TCGTGCTACGGCGG-TAAAGGTTAC-GAGCAGACATGTCCTGATCAAAA-ATATTTCG 158 consensus_3706#2 --TCGTGCTACGGCGGTGAAAGGTTAC-GAGCAGACATGTCCTGATCAAAA-ATATTTCG 192 ************* ******* * ******************** ** ******** consensus_3706#0 NTCCAATNAATTNNGTTATGCGACATTCCTGGGAATGTAGACTTGCGTCGTGAACAAGCT 298 consensus_3706#1 ATCCAATTAATTTG-TTATGCGACATTCCTGAGAATGTAGACT-GCGTCGTGAACAA-CT 215 consensus_3706#2 ATCCAAGTTAATTTGTTATGCGACATTCCTGAGAATGTAGACT-GCGTCGTGAACAA-CT 250 ***** * * **************** *********** ************* ** consensus_3706#0 GCCTCACCGAATGANAGATTGTATATCTGCC-CTGTTAATGGCGTCATGTAGCAGTACTT 357 consensus_3706#1 GCC-CACCGAATGAAA--TTGTATATCTGCC-C-GTTAATGGC-TCATGTA-CAG-ACTT 267 consensus_3706#2 GCC-CACCGAATGAAAC-TTGTATATCTGACACCGTTAACTGGCTCATGGTACACGACTT 308 *** ********** * *********** * * ***** * ***** ** **** consensus_3706#0 CATCACGATGCGATATGGTGTGAGATGGCGTNTATGCAAAGTTCATGCCNG-ACAGAGCA 416 consensus_3706#1 CAT-ACGATGCATTG----GTGGAGTGGCTTATG---AAAGTTCATGCCAG-CCAGGCTT 318 consensus_3706#2 CAT-ACGATGCACTTG---GTGGAGTGGCTTATG---AAAGTTCATGCCANGCCAGAGTC 361 *** ******* * *** **** * * ************ *** consensus_3706#0 TTGTTTTGTTAGTATCCAGCACTGACTAAGAATGTAATATTGGGAGAAGCGAGGGTAATA 476 consensus_3706#1 GTTTTTTG-----ATCCAGCACTA--CAAGAATGTAATTT---GGAAAGCGAGGTAGATT 368 consensus_3706#2 TTGTTTANATTGATCCNAGCACTACTAGAGAATGTAATTT--GGACAAGCGAGGTAGATT 419 * *** * ****** ********** * * ******** ** consensus_3706#0 AGCGATAGTGAAATCCCTGCGACA-CAA-ACACCGACGAGNACCCTCTCTATCCTGGAAA 534 consensus_3706#1 -GCG-TAGT-AAATCCCTGC-ACA-CAA-CCACCGCCA--GACCCTC-CTATCCTGGAAA 419 consensus_3706#2 -GCG-TAGTAAANTCCCTGGGACAACAATGCANCGGGCAGANACCTACCTATCCTGGAAA 477 *** **** ** ****** *** *** ** ** *** ************ consensus_3706#0 TACTATCCAACAGCCGAGGAAANCTGCACCACAGAGTATATCCTATGTTATGAATGCGCG 594 consensus_3706#1 T-CTATCCAA--ACCCAGGAAACTG----CAAAGAGTATATCCTATGTT-TGAATG-GCG 470 consensus_3706#2 GTCTATCCAA--AGCCAGGAAACTG----CNAAGAGTATATCCT---------------- 515 ******** * ****** * ************ consensus_3706#0 ACGGNATCTGTCCGGTCGAAAGCGCTCCAGGAGCTGTTCTNCTGAANTGACAGGCAAACG 654 consensus_3706#1 AAGGAAT-TGTTCGGC--AATGCGCTCCAGGA-CTGTTCTTT--GATGAGCAGGCAA-CG 523 consensus_3706#2 ------------------------------------------------------------ consensus_3706#0 AGCTTGCTGTAGCTGGGCTTGGAGGGTCGATGGCTGGCCCNAGATGAAANTTGCTACCGA 714 consensus_3706#1 AGTT--GTGTAGCTGGCTTTGAG------------------------------------- 544 consensus_3706#2 ------------------------------------------------------------ consensus_3706#0 AGACCACCCCCGCNANACTCGAAAACNAANCAAGCCGCGCNTCACGGCCANACACNGCAA 774 consensus_3706#1 ------------------------------------------------------------ consensus_3706#2 ------------------------------------------------------------ consensus_3706#0 GCATCGCGGCNCTNAGGGCGACACGNCACGCACCGAAACNCCGCNGGACATGNCACAACA 834 consensus_3706#1 ------------------------------------------------------------ consensus_3706#2 ------------------------------------------------------------ consensus_3706#0 AGAGACCNCCGGAACCCACGCCAAGAAGACGNNCACCGTNAACACNACAAGCAATGTCAC 894 consensus_3706#1 ------------------------------------------------------------ consensus_3706#2 ------------------------------------------------------------ consensus_3706#0 ACAAGCCGCAGGTACCCAAACNGGAAAAGCAGGCGTCNACGACAAACACGGCAACAAAAC 954 consensus_3706#1 ------------------------------------------------------------ consensus_3706#2 ------------------------------------------------------------ consensus_3706#0 AACACAACGACAAACAAAACCGNCNGTTAGNGNCANCAAAGACAACACCTCAAANGAAGG 1014 consensus_3706#1 ------------------------------------------------------------ consensus_3706#2 ------------------------------------------------------------ consensus_3706#0 CAAAACCAACGGGAAAGCCGCACACACGCNACGGNAACCGTGGCCCACAACAGTAACCCA 1074 consensus_3706#1 ------------------------------------------------------------ consensus_3706#2 ------------------------------------------------------------ consensus_3706#0 TTGCACAGGAAAAAG 1089 consensus_3706#1 --------------- consensus_3706#2 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||