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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence
[CCGCGAGCGGCGCCCTTTTTTTTTTTTTTTCTGGTTCATCTACCGGTGTACTTAAACGTTCCCTTTGCCGTCGGTGTATGTGTCTGTGCGTGTGTGTGCTTGTGTGTGTGCTTGTGTGTGGTTTTCAATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTTAGTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCT-------T-TCTCTCTC--TCTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCTTACTAGCGTTTAATATACGAGCCTGCCTTGTCCATTTTGCTACGTTTGCTTGTTTGTTTCGTTTTTTGTTTTGTTTTTTTTTTTCCTTTAAAGAGATATCTGCTTATTTAAAATGGGTTTTAGTTAAGCTTA]
[+] EMBL BM582043 [CCGCGAGCGGCGCCCTTTTTTTTTTTTTTTCTGGTTCATCTACCGGTGTACTTAAACGTTCCCTTTGCCGTCGGTGTATGTGTCTGTGCGTGTGTGTGCTTGTGTGTGTGCTTGTGTGTGGTTTTCAATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTTAGTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCT T TCTCTCTC TCTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCC ]
[-] EMBL BX614220 [ CAAACGAAACAAAAAAGTAACTTCGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTAAGTTTTCCGAATCCGAAACGATTTGGTTGCACTTCTTTCCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGC TTTTTATCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGAATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAAGTTTGTCTAATTACTAGCGTTTAATATACGAGCCTGCCTTGTCCATTTTGCTACGTTTGCTTGTTTGTTTCGTTTTTTGTTTTGTTTTTTTTTTTCCTTTAAAGAGATATCTGCTTATTTAAAATGGGTTTTAGTTAAGCTTA]
consensusID : consensus_3711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[ATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGCTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTAAGTTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCCACTCGTGTTGTTTTTTTTTTTTTTTCATCCTTACGCATCTAATATTACACAACTCTCTCAGTTCTG]
[+] EMBL CNS09FL2 [ATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATTTACATTACGGTTTACCACAAACGAAACAAAAAAGCTAACTACGCAAGATGGATGAAAAATGATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAAAGACTTGGTAAGTTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCACTCTGCCGAAGCTGATGGCTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAATGTTACAATGCCACAGATTTAATAGCAACACACACACACACACGCATACACTCTTGCTCAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCCACTCGTGTTGTTTTTTTTTTTTTTTCATCCTTACGCATCTAATATTACACAACTCTCTCAGTTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3711#0 CCGCGAGCGGCGCCCTTTTTTTTTTTTTTTCTGGTTCATCTACCGGTGTACTTAAACGTT 60
consensus_3711#1 ------------------------------------------------------------
consensus_3711#0 CCCTTTGCCGTCGGTGTATGTGTCTGTGCGTGTGTGTGCTTGTGTGTGTGCTTGTGTGTG 120
consensus_3711#1 ------------------------------------------------------------
consensus_3711#0 GTTTTCAATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATT 180
consensus_3711#1 -------ATCGCACCGGAACAATTTATTGAAAATAATTTACAATCCTTATCGACTATATT 53
*****************************************************
consensus_3711#0 TACATTACGGTTTACCACAAACGAAACAAAAAAG-TAACTACGCAAGATGGATGAAAAAT 239
consensus_3711#1 TACATTACGGTTTACCACAAACGAAACAAAAAAGCTAACTACGCAAGATGGATGAAAAAT 113
********************************** *************************
consensus_3711#0 GATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAA 299
consensus_3711#1 GATTAAGTCTTATCCTTGCGTTTTCGTGTTGCTGTTTAATATGTTGCTATACTTGCCGAA 173
************************************************************
consensus_3711#0 AGACTTGGTTAGTTTT-CCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTTTCTCT 358
consensus_3711#1 AGACTTGGTAAGTTTTTCCGAATCCGAAACGATTTGGTTGCATTTCTTTCCTCTCTCTCT 233
********* ****** ************************************* *****
consensus_3711#0 CTCTCTCTCTCTCTCTCTCTTT----------------TCTCCCTCACTTCTCTTGCCCA 402
consensus_3711#1 CTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTCTCCCTCACTTCTCTTGCCCA 293
** ******************* **********************
consensus_3711#0 CTCTGCCGAAGCTGATGGCTTTTTTTTTTCGCAACAGATTCTACTAACATCGAGGCATAA 462
consensus_3711#1 CTCTGCCGAAGCTGATGGCTTTTTTTT--CGCAACAGATTCTACTAACATCGAGGCATAA 351
*************************** *******************************
consensus_3711#0 TGTTACAATGCCACAGATTTAATAGCAACACACACACACACACACGCATACACTCTTGCT 522
consensus_3711#1 TGTTACAATGCCACAGATTTAATAGCAACACACACACACACAC--GCATACACTCTTGCT 409
******************************************* ***************
consensus_3711#0 CAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCTTACTAGCGTTTAATATACGAGCC 582
consensus_3711#1 CAAAACCTATCGGAAGTAAACAAAAGGTTTGTCTCCC-ACTCGTGTTGTTTTT------T 462
************************************ *** * *** * *
consensus_3711#0 TGCCTTGTCCATTTTGCTACGTTTGCTTGTTTGTTTCGTTTTTTGTTTTGTTTTTTTTTT 642
consensus_3711#1 TTTTTTTTTCATCCTTACGCATCTAATATTACACAACTCTCTCAGTTCTG---------- 512
* ** * *** * * * * * * * * * *** **
consensus_3711#0 TCCTTTAAAGAGATATCTGCTTATTTAAAATGGGTTTTAGTTAAGCTTA 691
consensus_3711#1 -------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||