These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence [CCGCGCTGTTCAAACTAATTTTGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGAATCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAA-GGAGGCAGCAGGTCGATGATACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAGGGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAGC--AAAAAAACGGGATGAC--AGAAAACGAAGCGCGCG------TGTGTGT--GTGTGTGT--GTGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGTTGCAACGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCCTTCATACTTACAAGCTCTATAATAATTAAATAGAAAAAAAAAAACGAAAGAAACAATTATGTTGAAACGATGTACTATTACTGTAAAAATTGTAAAGCGGAGAGAGGAGAGGATCGTGAAAACGATGGTAAGGGACGGAGAGGGAGAAGTATACAATAAGCAAGGTAGAGCGAGGAAGGGTAAAGAGAAAAATCAGAAACAAAGAAACAAACGAACATAAAATGTATACAAAA] [+] EMBL BM608404 [CCGCGCTGTTCAAACTAATTTTGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGAATCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAA GGAGGCAGCAGGTCGATGATACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAGGGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAGC AAAAAAACGGGATGAC AGAAAACGAAGCGCGCG TGTGTGT GTGTGTGT GTGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGTTGCAACGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCCTTCATACTTACAAGCTCTATAATAATTAAATAGAAAAAAAAAAACGAAAGAAACAATTATGTTGAAACGATGTACTATTACTGTAAAAATTGTAAAGCGGAGAGAGGAGAGGATCGTGAAAACGATGGTAAGGGACGGAGAGGGAGAAGTATACAATAAGCAAGGTAGAGCGAGGAAGGGTAAAGAGAAA ] [+] EMBL BX609590 [ AGGAAGGGTAAGAAAAAATCGCAGAATCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAATGGAGGCAGCAGGTCGATGATACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCGAAA GGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAGCAAAAAAAAACGGGATGACAGAGAAAACGAAGCGCGTGTGTGTTTGTGTGTCCGTGTGTGTCCGTGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTGTCCGC TGTTGCAACGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCCTTCATACTTACAAGCTCTATAATAATTAAATAG AAAAAAAAACGAAAGAAACAATTATGTTGAAACGATGTACTATTACTGCTAAA TGTAAAGCGGA GAGAGGATCGTGAAAACGAT GTAAGGGACGGAGAGGGAGAAGTATACAATAAGCAAGGTAGAGCGAGGAAGGGTAAAGAGAAAAATCAGAAACAAAGAAACAAACGAACATAAAATGTATACAAAA] consensusID : consensus_3712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCGATAATTTATAACACAAAATGCCACATTTAATATAAATATATTCTATACATAAATGTAGCATATAGGAAGGATAGTTCGTGTCCCAAACCACTCGAAGATCGCTGTTCAAACTAATTTTGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGAAGCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAAAGGAGGCAGCAGGTCGATGATACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAGGGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAAACGGGATGACAGAGAAAACGAAGCGCGCGTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGCAACGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCCTTCATACTTACAAGCTCTATAATAATTAATAGAAAAAAAACGAAAGAAACAATTATGTTGAAACGATGTACTATTA] [+] EMBL BM649717 [CCGATAATTTATAACACAAAATGCCACATTTAATATAAATATATTCTATACATAAATGTAGCATATAGGAAGGATAGTTCGTGTCCCAAACCACTCGAAGATCGCTGTTCAAACTAATTTTGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGAAGCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAAAGGAGGCAGCAGGTCGATGATACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAGGGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAAACGGGATGACAGAGAAAACGAAGCGCGCGTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGCAACGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCCTTCATACTTACAAGCTCTATAATAATTAATAGAAAAAAAACGAAAGAAACAATTATGTTGAAACGATGTACTATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3712#0 ------------------------------------------------------------ consensus_3712#1 CCGATAATTTATAACACAAAATGCCACATTTAATATAAATATATTCTATACATAAATGTA 60 consensus_3712#0 ---------------------------------------CCGCGCTGTTCAAACTAATTT 21 consensus_3712#1 GCATATAGGAAGGATAGTTCGTGTCCCAAACCACTCGAAGATCGCTGTTCAAACTAATTT 120 ****************** consensus_3712#0 TGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGA 81 consensus_3712#1 TGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGA 180 ************************************************************ consensus_3712#0 ATCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAA-GGAGGCAGCAGGTCGATGAT 140 consensus_3712#1 AGCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAAAGGAGGCAGCAGGTCGATGAT 240 * ************************************* ******************** consensus_3712#0 ACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAG 200 consensus_3712#1 ACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAG 300 ************************************************************ consensus_3712#0 GGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAG-CAAAAAAACGG-GATGAC 258 consensus_3712#1 GGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAAACGGGATGACAGAGAAAAC 360 **************************************** * * ** * ** ** consensus_3712#0 AGAAAACGAA---------------------------GCGCGCGTGTGTGTGTGTGTGTG 291 consensus_3712#1 GAAGCGCGCGTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 420 * ** * * * ***************** consensus_3712#0 TGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGTTGCAA 351 consensus_3712#1 TGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTT---GCAA 477 ***************************************************** **** consensus_3712#0 CGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCG 411 consensus_3712#1 CGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCG 537 ************************************************************ consensus_3712#0 CGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACA 471 consensus_3712#1 CGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACA 597 ************************************************************ consensus_3712#0 TCCTTCATACTTACAAGCTCTATAATAATTAAATAGAAAAAAAAAAACGAAAGAAACAAT 531 consensus_3712#1 TCCTTCATACTTACAAGCTCTATAATAATTAA----TAGAAAAAAAACGAAAGAAACAAT 653 ******************************** * ********************* consensus_3712#0 TATGTTGAAACGATGTACTATTACTGTAAAAATTGTAAAGCGGAGAGAGGAGAGGATCGT 591 consensus_3712#1 TATGTTGAAACGATGTACTATTA------------------------------------- 676 *********************** consensus_3712#0 GAAAACGATGGTAAGGGACGGAGAGGGAGAAGTATACAATAAGCAAGGTAGAGCGAGGAA 651 consensus_3712#1 ------------------------------------------------------------ consensus_3712#0 GGGTAAAGAGAAAAATCAGAAACAAAGAAACAAACGAACATAAAATGTATACAAAA 707 consensus_3712#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||