These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CCGGCGGCTACTGGCTACCGGGAATAGAGGAGCATCGTCCATCGTCCTCCAGTGCATCAAACACCAAGGATTCTTCTTTCGACCTATGTTCCTTTCAGGGCTCCCATCTGTCTTTCCTGAAGCTTCCCCCTCACACAAAACAAAAAAAAACTCACCCAAGCACACACATACACAGACAAATGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTGGCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAATACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCCTAACGGCGAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGATATCGTTATGGACGTATCGTTTTTTTAGGAAATGCACTTAAAAGCATCAAACAAAAACAAAAGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAAGTAAACACGTGTCCGTAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCACTTAACACATTACCACTGTTAATTCTGAAAAAAAAAACCCAACTTGTAATGGGATTTGTTTGTAAATGTTATTATCCACGGGGGATCCTT] [+] EMBL BM608298 [CCGGCGGCTACTGGCTACCGGGAATAGAGGAGCATCGTCCATCGTCCTCCAGTGCATCAAACACCAAGGATTCTTCTTTCGACCTATGTTCCTTTCAGGGCTCCCATCTGTCTTTCCTGAAGCTTCCCCCTCACACAAAACAAAAAAAAACTCACCCAAGCACACACATACACAGACAAATGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTGGCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAATACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCCTAACGGCGAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGATATCGTTATGGACGTATCGTTTTTTTAGGAAATGCACTTAAAAGCATCAAACAAAAACAAAAGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAAGTAAACACGTGTCCGTAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCACTTAACACATTACCACTGTTAATTCTGAAAAAAAAAACCCAACTTGTAATGGGATTTGTTTGTAAATGTTATTATCCACGGGGGATCCTT] consensusID : consensus_3717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence [CCGCGGACGCGTGGGCTCACCCAAGCACACACATACACAGACAAATGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTGGCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAATACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCCTAACGGCAAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGATATCGTTATGGACGTATCGTTTTTTTAGGAAATCCACTTAAAAACATCAAACAAAAACAAAAGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAAGTACACACGTGTCCGGAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCACTTAACACATTACCACTGTTAATTCTGAAAAAAACCCAACTTGTAATGGGATTTGTTTGTAAATGTTATTATCCACGGTGTATCCTTTATCCTTTCTGTTTGTTTGTGTTGGGGCGCTCGAGCGCTCAGTGTGGAGTAGCATAAAGGGGCATGTTCTGTTAACTGAATTAGTGTAGCTTCAAAAATGACGAGAAGGAGGATCGTTTAACGATCATCGCACGTGTC] [+] EMBL BM642351 [CCGCGGACGCGTGGGCTCACCCAAGCACACACATACACAGACAAATGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTGGCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAATACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCCTAACGGCAAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGATATCGTTATGGACGTATCGTTTTTTTAGGAAATCCACTTAAAAACATCAAACAAAAACAAAAGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAAGTACACACGTGTCCGGAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCACTTAACACATTACCACTGTTAATTCTGAAAAAAACCCAACTTGTAATGGGATTTGTTTGTAAATGTTATTATCCACGGTGTATCCTTTATCCTTTCTGTTTGTTTGTGTTGGGGCGCTCGAGCGCTCAGTGTGGAGTAGCATAAAGGGGCATGTTCTGTTAACTGAATTAGTGTAGCTTCAAAAATGACGAGAAGGAGGATCGTTTAACGATCATCGCACGTGTC] [+] EMBL BX603189 [ gAAGCATCAAACAAAAACAAAAGACATCAAACCTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAAGTAAACACGTGTCCGGAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCACTTAACACATTACCACTGTTAATTCTGAAAAAAACCCAACTTGTAATGGGATTTGTTTGTAAATGTTATTATCCACGGTGTATCCTTTATCCTTTCTGTTTGTTTGTGTTGGGGCGCTCGAGCGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3717#0 CCGGCGGCTACTGGCTACCGGGAATAGAGGAGCATCGTCCATCGTCCTCCAGTGCATCAA 60 consensus_3717#1 ------------------------------------------------------------ consensus_3717#0 ACACCAAGGATTCTTCTTTCGACCTATGTTCCTTTCAGGGCTCCCATCTGTCTTTCCTGA 120 consensus_3717#1 ------------------------------------------------------------ consensus_3717#0 AGCTTCCCCCTCACACAAAACAAAAAAAAACTCACCCAAGCACACACATACACAGACAAA 180 consensus_3717#1 ---------------CCGCGGACGCGTGGGCTCACCCAAGCACACACATACACAGACAAA 45 * * ****************************** consensus_3717#0 TGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTG 240 consensus_3717#1 TGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTG 105 ************************************************************ consensus_3717#0 GCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAAT 300 consensus_3717#1 GCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAAT 165 ************************************************************ consensus_3717#0 ACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCC 360 consensus_3717#1 ACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCC 225 ************************************************************ consensus_3717#0 TAACGGCGAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGAT 420 consensus_3717#1 TAACGGCAAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGAT 285 ******* **************************************************** consensus_3717#0 ATCGTTATGGACGTATCGTTTTTTTAGGAAATGCACTTAAAAGCATCAAACAAAAACAAA 480 consensus_3717#1 ATCGTTATGGACGTATCGTTTTTTTAGGAAATCCACTTAAAAACATCAAACAAAAACAAA 345 ******************************** ********* ***************** consensus_3717#0 AGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAA 540 consensus_3717#1 AGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAA 405 ************************************************************ consensus_3717#0 GTAAACACGTGTCCGTAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCAC 600 consensus_3717#1 GTACACACGTGTCCGGAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCAC 465 *** *********** ******************************************** consensus_3717#0 TTAACACATTACCACTGTTAATTCTGAAAAAAAAAACCCAACTTGTAATGGGATTTGTTT 660 consensus_3717#1 TTAACACATTACCACTGTTAATTCTGAAAAA---AACCCAACTTGTAATGGGATTTGTTT 522 ******************************* ************************** consensus_3717#0 GTAAATGTTATTATCCACGGGGGATCCTT------------------------------- 689 consensus_3717#1 GTAAATGTTATTATCCACGGTGTATCCTTTATCCTTTCTGTTTGTTTGTGTTGGGGCGCT 582 ******************** * ****** consensus_3717#0 ------------------------------------------------------------ consensus_3717#1 CGAGCGCTCAGTGTGGAGTAGCATAAAGGGGCATGTTCTGTTAACTGAATTAGTGTAGCT 642 consensus_3717#0 ----------------------------------------------- consensus_3717#1 TCAAAAATGACGAGAAGGAGGATCGTTTAACGATCATCGCACGTGTC 689 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||