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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1234 fasta sequence
[CCGAAGCCTTGTACTGTTGTGCATGGTTTAAGGGGGATTCCTGATTGTATGGAACCCTCTGGACACTGTCCACGGGCCCCATCCAAACCCTCGCCGCGATCGTGGCGGTGGAACAGTGAGCGCTAATGGTAATGATGACGGTGAACGATGATGGAAATGATACGCAATTTTGCAACTGATGATCTCTGTGAAACTGTTCATTTTTTTTTAATTTAATTCTCTCTCCCCGCGCGTAGAGACTTGCATATTTATAAACATTTATTTTTTATTCGTACGATTGTTTGTTTGTTTTACAACGTGTTTTTGTAGCTCGTGTCGTTCTGCGTATCCTTGGCCTGATCTGCCCTAGTCTGGTCTGGTAATTATGGCCAAACATTATTAGTACAGGCAGGAGTGCTTTGTTTCTGTACTGTTTGGTACTGCTTCTCCTTCGAGCGCGAGCAACTTGGAACTTGGGCGGAGGAAGCATTCGTTCTTCCAACCCTTCCATACCGCACTGTGCAGCTGCAGCCGGGTGGCAAAGATATTAAATCAATCAAGAACGCCAAAACACACCGACATTTTTCATTGCCCGAGTATCTCCAGCTTCAAAAATCCCAAAAATTCAAACAATCGGTTGAAACACGCTAATATGTAAGCAACACATTGAATCCAACAAAAAATAAACAAACCAAAGCAATTGGAACGTGAGCAAGAACTGAACCGCTGAGGGTAAATTTTGACAAAAAAAAGAGGGGGGAGGGTTAGATTACATCGGTAGTGATGCTAAGCAAACTCTACACACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGAAATGCATTGGAAAAGCACTCGAACAGTTCAGATTGGTTCCGGGATGTTTGCAATGTCGAGGGAAAAGGGAGCACGTGTGCAGGCAATGGTCCCCAAAGCAGCCACAAGCGCACTGCAGTAACTACTACTACTACTACTACTACTACGACTACTACTACTATTACTACTACTTTTAATGACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTACGTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTATGTGTGCGTGGCATTGCTTATATACATGCACAAATGATCATCATTTTCCCCATTTCCCACACACCGCCCTGTTTTGCCAACATCAACCAACACAATTGCATGAAGGATTGTTTGA]
[+] EMBL BM624933 [CCGAAGCCTTGTACTGTTGTGCATGGTTTAAGGGGGATTCCTGATTGTATGGAACCCTCTGGACACTGTCCACGGGCCCCATCCAAACCCTCGCCGCGATCGTGGCGGTGGAACAGTGAGCGCTAATGGTAATGATGACGGTGAACGATGATGGAAATGATACGCAATTTTGCAACTGATGATCTCTGTGAAACTGTTCATTTTTTTTTAATTTAATTCTCTCTCCCCGCGCGTAGAGACTTGCATATTTATAAACATTTATTTTTTATTCGTACGATTGTTTGTTTGTTTTACAACGTGTTTTTGTAGCTCGTGTCGTTCTGCGTATCCTTGGCCTGATCTGCCCTAGTCTGGTCTGGTAATTATGGCCAAACATTATTAGTACAGGCAGGAGTGCTTTGTTTCTGTACTGTTTGGTACTGCTTCTCCTTCGAGCGCGAGCAACTTGGAACTTGGGCGGAGGAAGCATTCGTTCTTCCAACCCTTCCATACCGCACTGTGCAGCTGCAGCCGGGTGGCAAAGATATTAAATCAATCAAGAACGCCAAAACACACCGACATTTTTCATTGCCCGAGTATCTCCAGCTTCAAAAATCCCAAAAATTCAAACAATCGGTTGAAACACGCTAATATGTAAGCAACACATTGAATCCAACAAAAAATAAACAAACCAAA ]
[+] EMBL BM633515 [ ccgGAACGCCAAAACATACCGACATTTTTCATTGCCCGAGTATCTCCAGCTTCAAAAATCCCAAAAATTCAAACAATCGGTTGAAAAACGCTAATATGTAAGCAACACATTGAATCAAACAAAAAATAAACAAACAAAAGCAATTGGAACGTGAGCAAGAACTGAACCGCTGAGGGTAAATTTTGACAAAAAAAAGAGGGGGGAGGGTTAGATTACATCGGTAGTGATGCTAAGCAAACTCTACACACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGAAATGCATTGGAAAAGCACTCGAACAGTTCAGATTGGTTCCGGGATGTTTGCAATGTCGAGGGAAAAGGGAGCACGTGTGCAGGCAATGGTCCCCAAAGCAGCCACAAGCGCACTGCAGTAACTACTACTACTACTACTACTACTACGACTACTACTACTATTACTACTACTTTTAATGACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTACGTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTATGTGTGCGTGGCATTGCTTATATACATGCACAAATGATCATCATTTTCCCCATTTCCCACACACCGCCCTGTTTTGCCAACATCAACCAACACAATTGCATGAAGGATTGTTTGA]
consensusID : consensus_3720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGAAATGCATTGGAAAAGCACTCGAACAGTTCCGATTGGTTCCGGGATGTTTGCAATGCCGAGGGAAAAGGGAGCACGTGTGCAGGCAATGGTCCATAACGCAGCCACAAGCGCACTGCAGTAACTACTACTACTACTACTACTACTACTACGACTACTACTACTATTACTACTACTTTTAATGACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTACGTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTGTGTATGTGCGTGGCATTGCTTATATACATGCACAAATGATCACCATTTTCCCCATTTCCCATGCACCGCCCTGTTTTACCAACAACAACCAAAACAATTGCATGAAGGATTGTTTGATTGCTTGGTGGGGGTGGCTTTTATGTGGTGGCTGTTTGTTTTTCACTTCCAATTTACCACCAATAAAAAACAAACTGGAATCGAACGGGTATGCGAACGAGAGAGAAAGAGACAGAGACATGAAAGAGCAAACAGTAAAGCAAAGCGTTGGAAATGTATTGACAAGACTAAAAACTTTTGCCTATTTATATGTACAAATCGAACAAAAACAT]
[+] EMBL BM608201 [CCGCCCACGCGTCCGCCCACGCGTCCGCACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGAAATGCATTGGAAAAGCACTCGAACAGTTCCGATTGGTTCCGGGATGTTTGCAATGCCGAGGGAAAAGGGAGCACGTGTGCAGGCAATGGTCCATAACGCAGCCACAAGCGCACTGCAGTAACTACTACTACTACTACTACTACTACTACGACTACTACTACTATTACTACTACTTTTAATGACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTACGTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTGTGTATGTGCGTGGCATTGCTTATATACATGCACAAATGATCACCATTTTCCCCATTTCCCATGCACCGCCCTGTTTTACCAACAACAACCAAAACAATTGCATGAAGGATTGTTTGATTGCTTGGTGGGGGTGGCTTTTATGTGGTGGCTGTTTGTTTTTCACTTCCAATTTACCACCAATAAAAAACAAACTGGAATCGAACGGGTATGCGAACGAGAGAGAAAGAGACAGAGACATGAAAGAGCAAACAGTAAAGCAAAGCGTTGGAAATGTATTGACAAGACTAAAAACTTTTGCCTATTTATATGTACAAATCGAACAAAAACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3720#0 CCGAAGCCTTGTACTGTTGTGCATGGTTTAAGGGGGATTCCTGATTGTATGGAACCCTCT 60
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 GGACACTGTCCACGGGCCCCATCCAAACCCTCGCCGCGATCGTGGCGGTGGAACAGTGAG 120
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 CGCTAATGGTAATGATGACGGTGAACGATGATGGAAATGATACGCAATTTTGCAACTGAT 180
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 GATCTCTGTGAAACTGTTCATTTTTTTTTAATTTAATTCTCTCTCCCCGCGCGTAGAGAC 240
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 TTGCATATTTATAAACATTTATTTTTTATTCGTACGATTGTTTGTTTGTTTTACAACGTG 300
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 TTTTTGTAGCTCGTGTCGTTCTGCGTATCCTTGGCCTGATCTGCCCTAGTCTGGTCTGGT 360
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 AATTATGGCCAAACATTATTAGTACAGGCAGGAGTGCTTTGTTTCTGTACTGTTTGGTAC 420
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 TGCTTCTCCTTCGAGCGCGAGCAACTTGGAACTTGGGCGGAGGAAGCATTCGTTCTTCCA 480
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 ACCCTTCCATACCGCACTGTGCAGCTGCAGCCGGGTGGCAAAGATATTAAATCAATCAAG 540
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 AACGCCAAAACACACCGACATTTTTCATTGCCCGAGTATCTCCAGCTTCAAAAATCCCAA 600
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 AAATTCAAACAATCGGTTGAAACACGCTAATATGTAAGCAACACATTGAATCCAACAAAA 660
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 AATAAACAAACCAAAGCAATTGGAACGTGAGCAAGAACTGAACCGCTGAGGGTAAATTTT 720
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 GACAAAAAAAAGAGGGGGGAGGGTTAGATTACATCGGTAGTGATGCTAAGCAAACTCTAC 780
consensus_3720#1 ---------------------------------CCGCCCACG-CGTCCGCCCACGCGTCC 26
** * * * * * *
consensus_3720#0 ACACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGA 840
consensus_3720#1 GCACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGA 86
***********************************************************
consensus_3720#0 AATGCATTGGAAAAGCACTCGAACAGTTCAGATTGGTTCCGGGATGTTTGCAATGTCGAG 900
consensus_3720#1 AATGCATTGGAAAAGCACTCGAACAGTTCCGATTGGTTCCGGGATGTTTGCAATGCCGAG 146
***************************** ************************* ****
consensus_3720#0 GGAAAAGGGAGCACGTGTGCAGGCAATGGTCCCCAAAGCAGCCACAAGCGCACTGCAGTA 960
consensus_3720#1 GGAAAAGGGAGCACGTGTGCAGGCAATGGTCCATAACGCAGCCACAAGCGCACTGCAGTA 206
******************************** ** ***********************
consensus_3720#0 ACTACTACTACTACTACTACTACTAC---GACTACTACTACTATTACTACTACTTTTAAT 1017
consensus_3720#1 ACTACTACTACTACTACTACTACTACTACGACTACTACTACTATTACTACTACTTTTAAT 266
************************** *******************************
consensus_3720#0 GACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTAC 1077
consensus_3720#1 GACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTAC 326
************************************************************
consensus_3720#0 GTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTATGT--GTGCGTGGCATTG 1135
consensus_3720#1 GTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTGTGTATGTGCGTGGCATTG 386
***************************************** *** *************
consensus_3720#0 CTTATATACATGCACAAATGATCATCATTTTCCCCATTTCCCACACACCGCCCTGTTTTG 1195
consensus_3720#1 CTTATATACATGCACAAATGATCACCATTTTCCCCATTTCCCATGCACCGCCCTGTTTTA 446
************************ ****************** **************
consensus_3720#0 CCAACATCAACCAACACAATTGCATGAAGGATTGTTTGA--------------------- 1234
consensus_3720#1 CCAACAACAACCAAAACAATTGCATGAAGGATTGTTTGATTGCTTGGTGGGGGTGGCTTT 506
****** ******* ************************
consensus_3720#0 ------------------------------------------------------------
consensus_3720#1 TATGTGGTGGCTGTTTGTTTTTCACTTCCAATTTACCACCAATAAAAAACAAACTGGAAT 566
consensus_3720#0 ------------------------------------------------------------
consensus_3720#1 CGAACGGGTATGCGAACGAGAGAGAAAGAGACAGAGACATGAAAGAGCAAACAGTAAAGC 626
consensus_3720#0 ------------------------------------------------------------
consensus_3720#1 AAAGCGTTGGAAATGTATTGACAAGACTAAAAACTTTTGCCTATTTATATGTACAAATCG 686
consensus_3720#0 -----------
consensus_3720#1 AACAAAAACAT 697
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||