Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3721 cluster # 3721       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3721#0 length = 779 sequences # 2  
consensus_3721#1 length = 659 sequences # 1  

consensusID : consensus_3721#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 779
fasta sequence
                              [GGAGGAAAAAAATACATATTAAGAATCGAACATACAACTAAAGGAGAGAAAATAGACAGCAACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAACCCCTTCAAACCAGGCAGCAGATAAAGCAGATTTCCACATAAGCGCTGGAGCGGCCCCGCAAGTGCTTGGCTTGGCTCTCTGTTCCTGTTTCGTTTTTAATTTGATGCTTTTCCGTACTTCTTTGTGAATGGCGTCGTTTGATTTCAACCATTTCCTTCCGGAGCGGGGAGTAGCTCGAGGGGCGTTTGTTACCGATCATTCAAACGCAGTAAGTGTCCAATAGCTTTATACAAACGAATGATAACTCAAGTATGCATACCAGGACCAGGCGGGGAGAGGTGAGGGGTGGAATTGATACTTTTGTGTGCAGAATAGAGAGAGAGAGCAAAAACAAACAAACAAACAAATACAAGATATGTTGTTTTGTGCAAGCAACTGAAACAATAGAGCAAGGAAAACAATAATGATTCAGAGCAGCAACACAAATAGATATACAACAGGTGACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTAAAGCAAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGAACATAATAAGAAATGAATCCAATTAAAAATACNACAGGAAATAAAGTGAAAAAAAACNAACTAGATAAAAGCTCGTTCCTTTTTTGTGCAAAGAATCACACCAGCNAATGTTAAGCAGAGTTTAGGTTAAACGCTA]

[+] EMBL BX625367             [GGAGGAAAAAAATACATATTAAGAATCGAACATACAACTAAAGGAGAGAAAATAGACAGCAACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAACCCCTTCAAACCAGGCAGCAGATAAAGCAGATTTCCACATAAGCGCTGGAGCGGCCCCGCAAGTGCTTGGCTTGGCTCTCTGTTCCTGTTTCGTTTTTAATTTGATGCTTTTCCGTACTTCTTTGTGAATGGCGTCGTTTGATTTCAACCATTTCCTTCCGGAGCGGGGAGTAGCTCGAGGGGCGTTTGTTACCGATCATTCAAACGCAGTAAGTGTCCAATAGCTTTATACAAACGAATGATAACTCAAGTATGCATACCAGGACCAGGCGGGGAGAGGTGAGGGGTGGAATTGATACTTTTGTGTGCAGAATAGAGAGAGAGAGCAAAAACAAACAAACAAACAAATACAAGATATGTTGTTTTGTGCAAGCAACTGAAACAATAGAGCAAGGAAAACAATAATGATTCAGAGCAGCAACACAAATAGATATACAACAGGTGACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTAAAGCAAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGAACATAATAAGAAATGAATCCAATTAAAAATACNACAGGAAATAAAGTGAAAAAAAACNAACTAGATAAAAGCTCGTTCCTTTTTTGTGCAAAGAATCACACCAGCNAATGTTAAGCAGAGTTTAGGTTAAACGCTA]
[+] EMBL BX622806             [                                                  AATAGACAGCAACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAACCCCTTCAAACCAGGCAGCAGATAAAGCAGACTTCCACATAAGCGCTGGAGCGGCCCCGCAAGTGCTTGGCTTGGCTCTCTGTTCCTGTTTCGTTTTTAATTTGATGCTTTTCCGTACTTCTTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]


>consensus_3721#0 GGAGGAAAAAAATACATATTAAGAATCGAACATACAACTAAAGGAGAGAAAATAGACAGC AACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAACCCCTTCAAACCAGG CAGCAGATAAAGCAGATTTCCACATAAGCGCTGGAGCGGCCCCGCAAGTGCTTGGCTTGG CTCTCTGTTCCTGTTTCGTTTTTAATTTGATGCTTTTCCGTACTTCTTTGTGAATGGCGT CGTTTGATTTCAACCATTTCCTTCCGGAGCGGGGAGTAGCTCGAGGGGCGTTTGTTACCG ATCATTCAAACGCAGTAAGTGTCCAATAGCTTTATACAAACGAATGATAACTCAAGTATG CATACCAGGACCAGGCGGGGAGAGGTGAGGGGTGGAATTGATACTTTTGTGTGCAGAATA GAGAGAGAGAGCAAAAACAAACAAACAAACAAATACAAGATATGTTGTTTTGTGCAAGCA ACTGAAACAATAGAGCAAGGAAAACAATAATGATTCAGAGCAGCAACACAAATAGATATA CAACAGGTGACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTAAAG CAAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGAACATAATAAGAAATGAA TCCAATTAAAAATACNACAGGAAATAAAGTGAAAAAAAACNAACTAGATAAAAGCTCGTT CCTTTTTTGTGCAAAGAATCACACCAGCNAATGTTAAGCAGAGTTTAGGTTAAACGCTA



consensusID : consensus_3721#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence
                              [GTACGTCCTCCCCNCGATGTCTATCCATCCCCTTCCTTCCAGGCTNGAGGATNTCTGCGTTTCCTACATAAGGCGCTGGGACGGCCCCGCAAGTGTCTGGCTGTGGCTCTTCTGTTTCTCCTGGTTGTCGCTTTTTAATTGTGGATGGCTGTTTGTCCGTNACCTTCTTGTGGTGANATGGGCTCTCGCTTTTGGATTGTCAAACCATTGTTCCTTCCCGGAGCGGGTGGAGAAGCNTCGAGGGGCCGTTTGGTTTACCCGATCATTCNACGCAGTATAGTGTCCAANTAGCTTTAAGACAACGATGGATATACTCAAGTATTGCATTACCAAGGACCAGNTCGGGAGAGGTGAGGGGTTGGAAATTGTATACTTGTTTGTGTGCAGAATTAGAGAGTAGTAGNACGCTCGCCACATTCCAGGATTATTTGTTTTGGCANGCCCTGGACCATGGCCAGGACATATGATTCNGACCAGCACACATAGATATACTACAGGTGTACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTATAAGCAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGTACATNATAAGAAATGAATCCAATTAAAATACGAGAGGAAAAAAAAAAAAAATAAGGGGGGATCT]

[-] EMBL AL692940             [GTACGTCCTCCCCNCGATGTCTATCCATCCCCTTCCTTCCAGGCTNGAGGATNTCTGCGTTTCCTACATAAGGCGCTGGGACGGCCCCGCAAGTGTCTGGCTGTGGCTCTTCTGTTTCTCCTGGTTGTCGCTTTTTAATTGTGGATGGCTGTTTGTCCGTNACCTTCTTGTGGTGANATGGGCTCTCGCTTTTGGATTGTCAAACCATTGTTCCTTCCCGGAGCGGGTGGAGAAGCNTCGAGGGGCCGTTTGGTTTACCCGATCATTCNACGCAGTATAGTGTCCAANTAGCTTTAAGACAACGATGGATATACTCAAGTATTGCATTACCAAGGACCAGNTCGGGAGAGGTGAGGGGTTGGAAATTGTATACTTGTTTGTGTGCAGAATTAGAGAGTAGTAGNACGCTCGCCACATTCCAGGATTATTTGTTTTGGCANGCCCTGGACCATGGCCAGGACATATGATTCNGACCAGCACACATAGATATACTACAGGTGTACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTATAAGCAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGTACATNATAAGAAATGAATCCAATTAAAATACGAGAGGAAAAAAAAAAAAAATAAGGGGGGATCT]


>consensus_3721#1 GTACGTCCTCCCCNCGATGTCTATCCATCCCCTTCCTTCCAGGCTNGAGGATNTCTGCGT TTCCTACATAAGGCGCTGGGACGGCCCCGCAAGTGTCTGGCTGTGGCTCTTCTGTTTCTC CTGGTTGTCGCTTTTTAATTGTGGATGGCTGTTTGTCCGTNACCTTCTTGTGGTGANATG GGCTCTCGCTTTTGGATTGTCAAACCATTGTTCCTTCCCGGAGCGGGTGGAGAAGCNTCG AGGGGCCGTTTGGTTTACCCGATCATTCNACGCAGTATAGTGTCCAANTAGCTTTAAGAC AACGATGGATATACTCAAGTATTGCATTACCAAGGACCAGNTCGGGAGAGGTGAGGGGTT GGAAATTGTATACTTGTTTGTGTGCAGAATTAGAGAGTAGTAGNACGCTCGCCACATTCC AGGATTATTTGTTTTGGCANGCCCTGGACCATGGCCAGGACATATGATTCNGACCAGCAC ACATAGATATACTACAGGTGTACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGT AAGTATGTATAAGCAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGTACATN ATAAGAAATGAATCCAATTAAAATACGAGAGGAAAAAAAAAAAAAATAAGGGGGGATCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3721#0      GGAGGAAAAAAATACATATTAAGAATCGAACATACAACTAAAGGAGAGAAAATAGACAGC 60
consensus_3721#1      ------------------------------------------------------------
                                                                                  

consensus_3721#0      AACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAA-CCCCTTCAAACCAG 119
consensus_3721#1      -----------------GTACGTC-CTCCCCNCGATGTCTATCCATCCCCTTCCTTCCAG 42
                                       *     * ** *** ****  * *** * *******   ****

consensus_3721#0      GC-AGCAGATAAAGCAGATTTCCACATAAG-CGCTGGAGCGGCCCCGCAAGTGCTTGGCT 177
consensus_3721#1      GCTNGAGGATNTCTGCGTTTCCTACATAAGGCGCTGGGACGGCCCCGCAAGTGTCTGGCT 102
                      **  *  ***      * ** * ******* ******  **************  *****

consensus_3721#0      -TGGCTCT-CTGTTCCTGTT-----TCGTTTTTAATTTGA-------TGCTTTTCCGTA- 222
consensus_3721#1      GTGGCTCTTCTGTTTCTCCTGGTTGTCGCTTTTTAATTGTGGATGGCTGTTTGTCCGTNA 162
                       ******* ***** **  *     *** **** * ***        ** ** *****  

consensus_3721#0      CTTCTTTGTG----AATGG-----CGTCGTTTGATT-TCAACC----ATTTCCTTCCGGA 268
consensus_3721#1      CCTTCTTGTGGTGANATGGGCTCTCGCTTTTGGATTGTCAAACCATTGTTCCTTCCCGGA 222
                      * *  *****     ****     **   ** **** **** *     ** * * *****

consensus_3721#0      GCGGG--GAGTAGCT-CGAGGGGC-GTTTG--TTACC-GATCATTCAAACGCAGTA-AGT 320
consensus_3721#1      GCGGGTGGAGAAGCNTCGAGGGGCCGTTTGGTTTACCCGATCATTCNA-CGCAGTATAGT 281
                      *****  *** ***  ******** *****  ***** ******** * ******* ***

consensus_3721#0      GTCCAAT-AGCTTTATACAAACGAATGATA-ACTCAAGTAT-GCAT-ACCA-GGACCAGG 375
consensus_3721#1      GTCCAANTAGCTTTAAGACAACGATGGATATACTCAAGTATTGCATTACCAAGGACCAGN 341
                      ******  *******    *****  **** ********** **** **** ******* 

consensus_3721#0      CGGGGAGAGGTGAGGGGT-GGAATTGATACTTTTGTGTGCAGAATAGAGAGAGAGAGCAA 434
consensus_3721#1      TCGGGAGAGGTGAGGGGTTGGAAATTGTATACTTGTTTGT-GTGCAGAATTAGAGAGTAG 400
                        **************** **** *  **   **** **  *   ***   ****** * 

consensus_3721#0      AAACAAACAAACAAACAAATACAAGATATGTTGTTTTGTGCAAGCAACTGAAACAATAGA 494
consensus_3721#1      TAGNACGCTCGCCAC--ATTCCAGGATTATTTGTTTTG-GCANGC--CCTGGACCATGG- 454
                       *  *  *   * *   * * ** ***   ******** *** **  *    ** ** * 

consensus_3721#0      GCAAGGAAAACAATAATGATTCAGAGCAGCAACACAAATAGATATACAACAGGTG-ACAC 553
consensus_3721#1      -CCAGGACAT-----ATGATTCNGACCAGCA---CACATAGATATACTACAGGTGTACAC 505
                       * **** *      ******* ** *****   ** ********** ******* ****

consensus_3721#0      GCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTAAAGCAAAGCTAATCCA 613
consensus_3721#1      GCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTATAAGCAAGCTAATCCA 565
                      ******************************************** *   ***********

consensus_3721#0      ACACACTCACACATAAGTGAAAGAGCAGGAACATAATAAGAAATGAATCCAATTAAAAAT 673
consensus_3721#1      ACACACTCACACATAAGTGAAAGAGCAGGTACATNATAAGAAATGAATCCAATTAAAA-T 624
                      ***************************** **** *********************** *

consensus_3721#0      ACNACAGGAAATAAAGTGAAAAAAAACNAACTAGATAAAAGCTCGTTCCTTTTTTGTGCA 733
consensus_3721#1      ACGAGAGGAAA--------AAAAAAAAAAATAAGGGGGGATCT----------------- 659
                      ** * ******        *******  **  **     * **                 

consensus_3721#0      AAGAATCACACCAGCNAATGTTAAGCAGAGTTTAGGTTAAACGCTA 779
consensus_3721#1      ----------------------------------------------
                                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)