These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3721#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence [GGAGGAAAAAAATACATATTAAGAATCGAACATACAACTAAAGGAGAGAAAATAGACAGCAACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAACCCCTTCAAACCAGGCAGCAGATAAAGCAGATTTCCACATAAGCGCTGGAGCGGCCCCGCAAGTGCTTGGCTTGGCTCTCTGTTCCTGTTTCGTTTTTAATTTGATGCTTTTCCGTACTTCTTTGTGAATGGCGTCGTTTGATTTCAACCATTTCCTTCCGGAGCGGGGAGTAGCTCGAGGGGCGTTTGTTACCGATCATTCAAACGCAGTAAGTGTCCAATAGCTTTATACAAACGAATGATAACTCAAGTATGCATACCAGGACCAGGCGGGGAGAGGTGAGGGGTGGAATTGATACTTTTGTGTGCAGAATAGAGAGAGAGAGCAAAAACAAACAAACAAACAAATACAAGATATGTTGTTTTGTGCAAGCAACTGAAACAATAGAGCAAGGAAAACAATAATGATTCAGAGCAGCAACACAAATAGATATACAACAGGTGACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTAAAGCAAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGAACATAATAAGAAATGAATCCAATTAAAAATACNACAGGAAATAAAGTGAAAAAAAACNAACTAGATAAAAGCTCGTTCCTTTTTTGTGCAAAGAATCACACCAGCNAATGTTAAGCAGAGTTTAGGTTAAACGCTA] [+] EMBL BX625367 [GGAGGAAAAAAATACATATTAAGAATCGAACATACAACTAAAGGAGAGAAAATAGACAGCAACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAACCCCTTCAAACCAGGCAGCAGATAAAGCAGATTTCCACATAAGCGCTGGAGCGGCCCCGCAAGTGCTTGGCTTGGCTCTCTGTTCCTGTTTCGTTTTTAATTTGATGCTTTTCCGTACTTCTTTGTGAATGGCGTCGTTTGATTTCAACCATTTCCTTCCGGAGCGGGGAGTAGCTCGAGGGGCGTTTGTTACCGATCATTCAAACGCAGTAAGTGTCCAATAGCTTTATACAAACGAATGATAACTCAAGTATGCATACCAGGACCAGGCGGGGAGAGGTGAGGGGTGGAATTGATACTTTTGTGTGCAGAATAGAGAGAGAGAGCAAAAACAAACAAACAAACAAATACAAGATATGTTGTTTTGTGCAAGCAACTGAAACAATAGAGCAAGGAAAACAATAATGATTCAGAGCAGCAACACAAATAGATATACAACAGGTGACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTAAAGCAAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGAACATAATAAGAAATGAATCCAATTAAAAATACNACAGGAAATAAAGTGAAAAAAAACNAACTAGATAAAAGCTCGTTCCTTTTTTGTGCAAAGAATCACACCAGCNAATGTTAAGCAGAGTTTAGGTTAAACGCTA] [+] EMBL BX622806 [ AATAGACAGCAACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAACCCCTTCAAACCAGGCAGCAGATAAAGCAGACTTCCACATAAGCGCTGGAGCGGCCCCGCAAGTGCTTGGCTTGGCTCTCTGTTCCTGTTTCGTTTTTAATTTGATGCTTTTCCGTACTTCTTTGT ] consensusID : consensus_3721#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [GTACGTCCTCCCCNCGATGTCTATCCATCCCCTTCCTTCCAGGCTNGAGGATNTCTGCGTTTCCTACATAAGGCGCTGGGACGGCCCCGCAAGTGTCTGGCTGTGGCTCTTCTGTTTCTCCTGGTTGTCGCTTTTTAATTGTGGATGGCTGTTTGTCCGTNACCTTCTTGTGGTGANATGGGCTCTCGCTTTTGGATTGTCAAACCATTGTTCCTTCCCGGAGCGGGTGGAGAAGCNTCGAGGGGCCGTTTGGTTTACCCGATCATTCNACGCAGTATAGTGTCCAANTAGCTTTAAGACAACGATGGATATACTCAAGTATTGCATTACCAAGGACCAGNTCGGGAGAGGTGAGGGGTTGGAAATTGTATACTTGTTTGTGTGCAGAATTAGAGAGTAGTAGNACGCTCGCCACATTCCAGGATTATTTGTTTTGGCANGCCCTGGACCATGGCCAGGACATATGATTCNGACCAGCACACATAGATATACTACAGGTGTACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTATAAGCAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGTACATNATAAGAAATGAATCCAATTAAAATACGAGAGGAAAAAAAAAAAAAATAAGGGGGGATCT] [-] EMBL AL692940 [GTACGTCCTCCCCNCGATGTCTATCCATCCCCTTCCTTCCAGGCTNGAGGATNTCTGCGTTTCCTACATAAGGCGCTGGGACGGCCCCGCAAGTGTCTGGCTGTGGCTCTTCTGTTTCTCCTGGTTGTCGCTTTTTAATTGTGGATGGCTGTTTGTCCGTNACCTTCTTGTGGTGANATGGGCTCTCGCTTTTGGATTGTCAAACCATTGTTCCTTCCCGGAGCGGGTGGAGAAGCNTCGAGGGGCCGTTTGGTTTACCCGATCATTCNACGCAGTATAGTGTCCAANTAGCTTTAAGACAACGATGGATATACTCAAGTATTGCATTACCAAGGACCAGNTCGGGAGAGGTGAGGGGTTGGAAATTGTATACTTGTTTGTGTGCAGAATTAGAGAGTAGTAGNACGCTCGCCACATTCCAGGATTATTTGTTTTGGCANGCCCTGGACCATGGCCAGGACATATGATTCNGACCAGCACACATAGATATACTACAGGTGTACACGCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTATAAGCAAGCTAATCCAACACACTCACACATAAGTGAAAGAGCAGGTACATNATAAGAAATGAATCCAATTAAAATACGAGAGGAAAAAAAAAAAAAATAAGGGGGGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3721#0 GGAGGAAAAAAATACATATTAAGAATCGAACATACAACTAAAGGAGAGAAAATAGACAGC 60 consensus_3721#1 ------------------------------------------------------------ consensus_3721#0 AACCGTAATCGTGTAACGCGTAACGCTTCCCGCGATTACGATCAA-CCCCTTCAAACCAG 119 consensus_3721#1 -----------------GTACGTC-CTCCCCNCGATGTCTATCCATCCCCTTCCTTCCAG 42 * * ** *** **** * *** * ******* **** consensus_3721#0 GC-AGCAGATAAAGCAGATTTCCACATAAG-CGCTGGAGCGGCCCCGCAAGTGCTTGGCT 177 consensus_3721#1 GCTNGAGGATNTCTGCGTTTCCTACATAAGGCGCTGGGACGGCCCCGCAAGTGTCTGGCT 102 ** * *** * ** * ******* ****** ************** ***** consensus_3721#0 -TGGCTCT-CTGTTCCTGTT-----TCGTTTTTAATTTGA-------TGCTTTTCCGTA- 222 consensus_3721#1 GTGGCTCTTCTGTTTCTCCTGGTTGTCGCTTTTTAATTGTGGATGGCTGTTTGTCCGTNA 162 ******* ***** ** * *** **** * *** ** ** ***** consensus_3721#0 CTTCTTTGTG----AATGG-----CGTCGTTTGATT-TCAACC----ATTTCCTTCCGGA 268 consensus_3721#1 CCTTCTTGTGGTGANATGGGCTCTCGCTTTTGGATTGTCAAACCATTGTTCCTTCCCGGA 222 * * ***** **** ** ** **** **** * ** * * ***** consensus_3721#0 GCGGG--GAGTAGCT-CGAGGGGC-GTTTG--TTACC-GATCATTCAAACGCAGTA-AGT 320 consensus_3721#1 GCGGGTGGAGAAGCNTCGAGGGGCCGTTTGGTTTACCCGATCATTCNA-CGCAGTATAGT 281 ***** *** *** ******** ***** ***** ******** * ******* *** consensus_3721#0 GTCCAAT-AGCTTTATACAAACGAATGATA-ACTCAAGTAT-GCAT-ACCA-GGACCAGG 375 consensus_3721#1 GTCCAANTAGCTTTAAGACAACGATGGATATACTCAAGTATTGCATTACCAAGGACCAGN 341 ****** ******* ***** **** ********** **** **** ******* consensus_3721#0 CGGGGAGAGGTGAGGGGT-GGAATTGATACTTTTGTGTGCAGAATAGAGAGAGAGAGCAA 434 consensus_3721#1 TCGGGAGAGGTGAGGGGTTGGAAATTGTATACTTGTTTGT-GTGCAGAATTAGAGAGTAG 400 **************** **** * ** **** ** * *** ****** * consensus_3721#0 AAACAAACAAACAAACAAATACAAGATATGTTGTTTTGTGCAAGCAACTGAAACAATAGA 494 consensus_3721#1 TAGNACGCTCGCCAC--ATTCCAGGATTATTTGTTTTG-GCANGC--CCTGGACCATGG- 454 * * * * * * * ** *** ******** *** ** * ** ** * consensus_3721#0 GCAAGGAAAACAATAATGATTCAGAGCAGCAACACAAATAGATATACAACAGGTG-ACAC 553 consensus_3721#1 -CCAGGACAT-----ATGATTCNGACCAGCA---CACATAGATATACTACAGGTGTACAC 505 * **** * ******* ** ***** ** ********** ******* **** consensus_3721#0 GCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTAAAGCAAAGCTAATCCA 613 consensus_3721#1 GCAGACAGTTATAGCACAATTATGTAGTGTAACGTAAGTATGTATAAGCAAGCTAATCCA 565 ******************************************** * *********** consensus_3721#0 ACACACTCACACATAAGTGAAAGAGCAGGAACATAATAAGAAATGAATCCAATTAAAAAT 673 consensus_3721#1 ACACACTCACACATAAGTGAAAGAGCAGGTACATNATAAGAAATGAATCCAATTAAAA-T 624 ***************************** **** *********************** * consensus_3721#0 ACNACAGGAAATAAAGTGAAAAAAAACNAACTAGATAAAAGCTCGTTCCTTTTTTGTGCA 733 consensus_3721#1 ACGAGAGGAAA--------AAAAAAAAAAATAAGGGGGGATCT----------------- 659 ** * ****** ******* ** ** * ** consensus_3721#0 AAGAATCACACCAGCNAATGTTAAGCAGAGTTTAGGTTAAACGCTA 779 consensus_3721#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||