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Anopheles gambiae
cluster # 3725 cluster # 3725       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3725#0 length = 662 sequences # 1  
consensus_3725#1 length = 510 sequences # 2  

consensusID : consensus_3725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence
                              [AGAATCCCCGAGGTTTGTCGCTTGTGGAAGTGTTTTCNTTTTTTTGAAGACAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTTTCTTGCAGGCGTGCTCTAACCATGGCACTCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTTACGTGTTCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTTACCGCACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGCGAGCGAAGGGATGAAACCGTTGGCAAAGACGCGGGCCGAACAGTTGCTCCAGGAGTGGGAGCAGCTGGGCTACTTTCTCACGCTGGACGATAAGTGCTATCTGGGGCCGAAGGCGGTGGTGGAGTTTGAAAAGTACATCAGCAGGAACTATGCGGACGTTGTAACGCGCTGCTGCTTGTGCAATGTGACAATA]

[+] EMBL AL934852             [AGAATCCCCGAGGTTTGTCGCTTGTGGAAGTGTTTTCNTTTTTTTGAAGACAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTTTCTTGCAGGCGTGCTCTAACCATGGCACTCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTTACGTGTTCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTTACCGCACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGCGAGCGAAGGGATGAAACCGTTGGCAAAGACGCGGGCCGAACAGTTGCTCCAGGAGTGGGAGCAGCTGGGCTACTTTCTCACGCTGGACGATAAGTGCTATCTGGGGCCGAAGGCGGTGGTGGAGTTTGAAAAGTACATCAGCAGGAACTATGCGGACGTTGTAACGCGCTGCTGCTTGTGCAATGTGACAATA]


>consensus_3725#0 AGAATCCCCGAGGTTTGTCGCTTGTGGAAGTGTTTTCNTTTTTTTGAAGACAATTTAAAC CATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTTTCTTGCAGGCGTGCTCTA ACCATGGCACTCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGC ACGACGACAGCCACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCA ACGAGCGGATCTATCGCTTCGATCAGAAGATTGCGCTCGTCCACTACGATCCCACCGATA TGGACTTTTACGTGTTCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGT TTACCGCACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGG ATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGCGAGCGAAGGGA TGAAACCGTTGGCAAAGACGCGGGCCGAACAGTTGCTCCAGGAGTGGGAGCAGCTGGGCT ACTTTCTCACGCTGGACGATAAGTGCTATCTGGGGCCGAAGGCGGTGGTGGAGTTTGAAA AGTACATCAGCAGGAACTATGCGGACGTTGTAACGCGCTGCTGCTTGTGCAATGTGACAA TA



consensusID : consensus_3725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 510
fasta sequence
                              [ATCCCCCGAGGTTAAGACGAATCCCGATGTTGGCTTGCTGGTGTCCGCTTGTGGAAGTGTTTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTT-TCTGCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAG-CACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGCATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTATACGTGTNCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTCACCGACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGGAGCGAAGGGATGAAA]

[+] EMBL AL692978             [ATCCCCCGAGGTTAAGACGAATCCCGATGTTGGCTTGCTGGTGTCCGCTTGTGGAAGTGTTTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTT TCTGCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAG CACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGCATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTATACGTGTNCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTCACCGACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGGAGCGAAGGGATGAAA]
[+] EMBL BM605277             [            ccgGACGAATCCCGATGTTGG TTGCTGGCGTCCGCTTGTGGAAGTG TTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTTAGCTGCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAG ATTGCGCTCGTCCACTACGATCCCACC                                                                                                                                                                                            ]


>consensus_3725#1 ATCCCCCGAGGTTAAGACGAATCCCGATGTTGGCTTGCTGGTGTCCGCTTGTGGAAGTGT TTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCA TCGAGCGTTTCTGCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCAA TATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCACAGCATTCCAAGCGAAGCCGAT CTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGCATTGC GCTCGTCCACTACGATCCCACCGATATGGACTTTATACGTGTNCGTCAGTCTGCAGGAGT CGCCGATCGATTTGCAGCAGAACGTGTTCACCGACCGGAGCTACACTTCTTCCGGGTGCT GCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCT GACGAACGATACCGGAGCGAAGGGATGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3725#0      ----------------AGAATCCCCGAGGTTTGT-----------CGCTTGTGGAAGTGT 33
consensus_3725#1      ATCCCCCGAGGTTAAGACGAATCCCGATGTTGGCTTGCTGGTGTCCGCTTGTGGAAGTGT 60
                                      *  *  ***** *** *            ***************

consensus_3725#0      TTTCNTTTTTTTGAAGACAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCA 93
consensus_3725#1      TTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCA 120
                      ***  ******  *    ******************************************

consensus_3725#0      TCGAGCGTTTCTTGCAGGCGTGCTCTAACCATGGCACTCTGAGTACGAGCCAGGCCTTCA 153
consensus_3725#1      TCGAGCGTTTCT-GCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCA 179
                      ************ ************************ **********************

consensus_3725#0      ATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCG 213
consensus_3725#1      ATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGC-ACAGCATTCCAAGCGAAGCCG 238
                      ************************************** *********************

consensus_3725#0      ATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAG-ATT 272
consensus_3725#1      ATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGCATT 298
                      ******************************************************** ***

consensus_3725#0      GCGCTCGTCCACTACGATCCCACCGATATGGACTTT-TACGTGTTCGTCAGTCTGCAGGA 331
consensus_3725#1      GCGCTCGTCCACTACGATCCCACCGATATGGACTTTATACGTGTNCGTCAGTCTGCAGGA 358
                      ************************************ ******* ***************

consensus_3725#0      GTCGCCGATCGATTTGCAGCAGAACGTGTTTACCGCACCGGAGCTACACTTCTTCCGGGT 391
consensus_3725#1      GTCGCCGATCGATTTGCAGCAGAACGTGTTCACCG-ACCGGAGCTACACTTCTTCCGGGT 417
                      ****************************** **** ************************

consensus_3725#0      GCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAA 451
consensus_3725#1      GCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAA 477
                      ************************************************************

consensus_3725#0      TCTGACGAACGATACCGCGAGCGAAGGGATGAAACCGTTGGCAAAGACGCGGGCCGAACA 511
consensus_3725#1      TCTGACGAACGATACCG-GAGCGAAGGGATGAAA-------------------------- 510
                      ***************** ****************                          

consensus_3725#0      GTTGCTCCAGGAGTGGGAGCAGCTGGGCTACTTTCTCACGCTGGACGATAAGTGCTATCT 571
consensus_3725#1      ------------------------------------------------------------
                                                                                  

consensus_3725#0      GGGGCCGAAGGCGGTGGTGGAGTTTGAAAAGTACATCAGCAGGAACTATGCGGACGTTGT 631
consensus_3725#1      ------------------------------------------------------------
                                                                                  

consensus_3725#0      AACGCGCTGCTGCTTGTGCAATGTGACAATA 662
consensus_3725#1      -------------------------------
                                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)