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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2222 fasta sequence
[CGTTACAGTTGATCGTGTGAATTTAGTGTTCGCGGTTGTGTGCTCTCTCCCTACCGTTCTTCAGCATGACGGATATTAATACACGCTTTCGTGGGCTGCTGCAGCGCCCGTACGAGCCGACCTTCGTGCCGAAAAACAATGGCCAGCTGTACTTCGATGTACCGGACTCTTACCTAACCGACCACTATCGCCCGTTCGGCGCGGCGCTACAGAATCGGTTTGGCACAAACGCTCAAACGCGCATTCCACTGCCAAACATTACGGCCCCGGATCTGGCGTACGCGGATGCCGTTAGCCGTCGGGGTGGATTTTCGATTTTCCATCCATCGCATCAGCGCGTGGCTAGTCAGCTGATCGAGCTGTTTCTCGAACAATCGAACCCGGACACACTGACGGCAATGGCTGTGTTTGTGCGGGATCGTGTGAATGGTCCGCTGTTCCAGTACGCGCTCTCGGTCGCGCTGATGCATCGTACCGATACGCGCGATGTCGAGATTCCGAGCTTTTTGGAGCTGTTCCCGGATCGGTACGTTGATCCGGCTGTGTTTCCGCAGCTGCGCGAAGAGGGCACACTTGTGGACCAGGGTGATCGCCGTGCAATCGAGATCCCGATGAACTTTACCGCCTCGGACAGGGTGGACGAGCAGCGGTTGGCCTACTGGCGGGAGGACATCGGTGTGAACCTGCACCACTGGCACTGGCATTTGGTGTATCCGGCCCGCGGGCCGAATCGTATCGTGCGCAAGGATCGCCGGGGTGAGCTGTTCTACTACATGCACCAGCAAACGATGGCTCGCTACAACATTGAGCGGTTTGCAAACGGAATGCCGCGGGTGGTTGCGTTCCGAAATTTCCGCGAAGCCATCCCCGAGGCGTACTTTCCCAAGATAACGCGCAGCTCCGATGGACGTTCGTATCCAGCTCGGCATCCCAACGAAACGTTGAGTGATCTTAAACGAGTTGAGGATGGTGTAATAGTATCGATCGCTGATATGGAGCTATGGACGACTAGGATTTTTGAAGCAATTGATAACGGCTTCGCTCAATCGTCGAGCAATCAGCGTGTTCCATTGGACAATGACAGCGGGATCGATTTGCTGGGGAACATTGTGGAAGCGAGCACCCTGTCGGTGAATCCGCAGTACTACGGAGATCTTCACAACAACGGGCACAACATCCTTGGCTACATACACGATCCGGACAACTCGTTCCTGGAGGGTTTCGGAGTGGTCGGAGACAACACGACGGCCATGCGCGATCCGGTGTTTTATCGTTGGCATCAGCACATCGATGACATTTTCGTCCGTCACAAGCAACGGCTTCCGGCGTACACGGGACAGGAGCTAGCATTTAACGATGTGGCGGTCGATAGCTTCGAAATTCAACTGAACAAAGCGAACGCACCCGTCAACATTCTGCTAACGTTCTGGCAAAGATCGCAGGTAAATCTCGGCACCGGGCTCGACTTCGGCCCGGAGGGCAATCTGTTTGCGACGTTCACGCACATTCAGCACGCACCGTACAGCTACCGCATACGGGTGAACAATCGTGCCGGGGACACTAGACGCGGCACGGTACGCATATTCTTCGGACCGAAAACAAACGAACGTGGCCAAACGTTGCCATTCCGCGAGCAGCGCCGTTTGATGGTGGAGTTGGACAAGTTTACCGTCACACTTAATGCCGGTGCTAATACGATCGTGCGACGATCGGATCAATCGAGCGTATCGATCCCGTACGAGCGAACGTTCCGAAATGTGGCTGCCTCATCGCTGACACAGAATGAAGCCTTCCAGTTCTGTAACTGTGGTTGGCCGAACCATATGCTTCTGCCGAAAGGTTCTCCCGACGGTATTGAGTATGACTTTTTCGTTATGGTGTCCGATTTTGCACAGGATCGCGTTGAGGATTTCGACGAGAATGTTAACTGTAACGATGCTCACTCATTCTGTGGTCTGCGTGATCGTCGCTATCCGGATTCACGTAGCATGGGCTATCCGTTCGATCGCTTCACGCCAGGAACGATTGGCAGTTTGCTAGATTTTACCAAACCTTACGTCAACATGTTGGTCACTCCGGTGAAGATACGGTTCACCAATACGGTCATAGCGCGTGCTTAAAGTTCTCCTGATATTATTGACTAAACGCACTACACTTATACTCTATTTACAAACGACTTTACTCGAAAATAAAATAACTGAACTATTTTCATGCAAAAAAAA]
[+] EMBL AGA010193 [CGTTACAGTTGATCGTGTGAATTTAGTGTTCGCGGTTGTGTGCTCTCTCCCTACCGTTCTTCAGCATGACGGATATTAATACACGCTTTCGTGGGCTGCTGCAGCGCCCGTACGAGCCGACCTTCGTGCCGAAAAACAATGGCCAGCTGTACTTCGATGTACCGGACTCTTACCTAACCGACCACTATCGCCCGTTCGGCGCGGCGCTACAGAATCGGTTTGGCACAAACGCTCAAACGCGCATTCCACTGCCAAACATTACGGCCCCGGATCTGGCGTACGCGGATGCCGTTAGCCGTCGGGGTGGATTTTCGATTTTCCATCCATCGCATCAGCGCGTGGCTAGTCAGCTGATCGAGCTGTTTCTCGAACAATCGAACCCGGACACACTGACGGCAATGGCTGTGTTTGTGCGGGATCGTGTGAATGGTCCGCTGTTCCAGTACGCGCTCTCGGTCGCGCTGATGCATCGTACCGATACGCGCGATGTCGAGATTCCGAGCTTTTTGGAGCTGTTCCCGGATCGGTACGTTGATCCGGCTGTGTTTCCGCAGCTGCGCGAAGAGGGCACACTTGTGGACCAGGGTGATCGCCGTGCAATCGAGATCCCGATGAACTTTACCGCCTCGGACAGGGTGGACGAGCAGCGGTTGGCCTACTGGCGGGAGGACATCGGTGTGAACCTGCACCACTGGCACTGGCATTTGGTGTATCCGGCCCGCGGGCCGAATCGTATCGTGCGCAAGGATCGCCGGGGTGAGCTGTTCTACTACATGCACCAGCAAACGATGGCTCGCTACAACATTGAGCGGTTTGCAAACGGAATGCCGCGGGTGGTTGCGTTCCGAAATTTCCGCGAAGCCATCCCCGAGGCGTACTTTCCCAAGATAACGCGCAGCTCCGATGGACGTTCGTATCCAGCTCGGCATCCCAACGAAACGTTGAGTGATCTTAAACGAGTTGAGGATGGTGTAATAGTATCGATCGCTGATATGGAGCTATGGACGACTAGGATTTTTGAAGCAATTGATAACGGCTTCGCTCAATCGTCGAGCAATCAGCGTGTTCCATTGGACAATGACAGCGGGATCGATTTGCTGGGGAACATTGTGGAAGCGAGCACCCTGTCGGTGAATCCGCAGTACTACGGAGATCTTCACAACAACGGGCACAACATCCTTGGCTACATACACGATCCGGACAACTCGTTCCTGGAGGGTTTCGGAGTGGTCGGAGACAACACGACGGCCATGCGCGATCCGGTGTTTTATCGTTGGCATCAGCACATCGATGACATTTTCGTCCGTCACAAGCAACGGCTTCCGGCGTACACGGGACAGGAGCTAGCATTTAACGATGTGGCGGTCGATAGCTTCGAAATTCAACTGAACAAAGCGAACGCACCCGTCAACATTCTGCTAACGTTCTGGCAAAGATCGCAGGTAAATCTCGGCACCGGGCTCGACTTCGGCCCGGAGGGCAATCTGTTTGCGACGTTCACGCACATTCAGCACGCACCGTACAGCTACCGCATACGGGTGAACAATCGTGCCGGGGACACTAGACGCGGCACGGTACGCATATTCTTCGGACCGAAAACAAACGAACGTGGCCAAACGTTGCCATTCCGCGAGCAGCGCCGTTTGATGGTGGAGTTGGACAAGTTTACCGTCACACTTAATGCCGGTGCTAATACGATCGTGCGACGATCGGATCAATCGAGCGTATCGATCCCGTACGAGCGAACGTTCCGAAATGTGGCTGCCTCATCGCTGACACAGAATGAAGCCTTCCAGTTCTGTAACTGTGGTTGGCCGAACCATATGCTTCTGCCGAAAGGTTCTCCCGACGGTATTGAGTATGACTTTTTCGTTATGGTGTCCGATTTTGCACAGGATCGCGTTGAGGATTTCGACGAGAATGTTAACTGTAACGATGCTCACTCATTCTGTGGTCTGCGTGATCGTCGCTATCCGGATTCACGTAGCATGGGCTATCCGTTCGATCGCTTCACGCCAGGAACGATTGGCAGTTTGCTAGATTTTACCAAACCTTACGTCAACATGTTGGTCACTCCGGTGAAGATACGGTTCACCAATACGGTCATAGCGCGTGCTTAAAGTTCTCCTGATATTATTGACTAAACGCACTACACTTATACTCTATTTACAAACGACTTTACTCGAAAATAAAATAACTGAACTATTTTCATGCAAAAAAAA]
[+] EMBL BX617132 [ GAAAACAAACGAACGTGGCCAAACGTTGCCATTCCGCGAGCAGCGCCGTTTGATGGTGGAGTTGGACAAGTTTACCGTCACACTTAATGCCGGTGCTAATACGATCGTGCGACGATCGGATCAATCGAGCGTATCGATCCCGTACGAGCGAACATTCCGAAATGTGGCTGCCTCATCGCTGACACAGAATGAAGCC TCCAGTTCTGTAACTGTGGTTGGCCGAACCATATGCTTCTGCCGAAAGGTTCTCCCGACGGTATTGAGTATGACTTTTTCGTTATGGTTACCGATTTTGCACAGGATCGCGTTGAGGATTTCGACGAGAATGTTAACTGTAATGATGCTCACTCATTCTGTGGTCTGCGTGATCGACGCTATCCGGATTCACGTAGCATGGGCTATCCGTTCGATCGCTTCACGCCAGGAACGATTGGCAGTTTGCTAGATTTTACCAAACCTTACGTCAACATGTTGGTCACTCCGGT ]
consensusID : consensus_3737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence
[GCAGAATCCCGAGGTTATGTTGAGCTGATCGCTGCTTATAGACTATTTTCCGTTCTCCCACAGGATCTTAAACGAGTTGAGGATGGTGTAATAGTATCGATCGCTGATATGGAGCTATGGACGACTAGGATTTTTGAAGCAATTGATAACGGCTTCGCTCAATCGTCGAGCAATCAGCGTGTTCCATTGGACAATGACAGCGGGATCGATTTGCTGGGGAACATTGTGGAAGCGAGCACCCTGTCGGTGAATCCGCAGTACTACGGAGATCTTCACAACAACGGGCACAACATCCTTGGCTACAATACACGATCCGCGACAACTCGTTCCTGGAGGGTTTCGGGAGGATGGTCGGAGACAACACGACCGGCCATGCGCGATCCGGTGTTTTATCGTTGGCATCAGCACATCGATGACATTTTCGTCCGTCACAAGCAACGGCTTCCGGCGTACACGGGACAGGAGGTACTGTACTGATCGCTGTATTACTTCCTACTAACGGTTTT]
[+] EMBL AL693074 [GCAGAATCCCGAGGTTATGTTGAGCTGATCGCTGCTTATAGACTATTTTCCGTTCTCCCACAGGATCTTAAACGAGTTGAGGATGGTGTAATAGTATCGATCGCTGATATGGAGCTATGGACGACTAGGATTTTTGAAGCAATTGATAACGGCTTCGCTCAATCGTCGAGCAATCAGCGTGTTCCATTGGACAATGACAGCGGGATCGATTTGCTGGGGAACATTGTGGAAGCGAGCACCCTGTCGGTGAATCCGCAGTACTACGGAGATCTTCACAACAACGGGCACAACATCCTTGGCTACAATACACGATCCGCGACAACTCGTTCCTGGAGGGTTTCGGGAGGATGGTCGGAGACAACACGACCGGCCATGCGCGATCCGGTGTTTTATCGTTGGCATCAGCACATCGATGACATTTTCGTCCGTCACAAGCAACGGCTTCCGGCGTACACGGGACAGGAGGTACTGTACTGATCGCTGTATTACTTCCTACTAACGGTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3737#0 CGTTACAGTTGATCGTGTGAATTTAGTGTTCGCGGTTGTGTGCTCTCTCCCTACCGTTCT 60
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 TCAGCATGACGGATATTAATACACGCTTTCGTGGGCTGCTGCAGCGCCCGTACGAGCCGA 120
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CCTTCGTGCCGAAAAACAATGGCCAGCTGTACTTCGATGTACCGGACTCTTACCTAACCG 180
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 ACCACTATCGCCCGTTCGGCGCGGCGCTACAGAATCGGTTTGGCACAAACGCTCAAACGC 240
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 GCATTCCACTGCCAAACATTACGGCCCCGGATCTGGCGTACGCGGATGCCGTTAGCCGTC 300
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 GGGGTGGATTTTCGATTTTCCATCCATCGCATCAGCGCGTGGCTAGTCAGCTGATCGAGC 360
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 TGTTTCTCGAACAATCGAACCCGGACACACTGACGGCAATGGCTGTGTTTGTGCGGGATC 420
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 GTGTGAATGGTCCGCTGTTCCAGTACGCGCTCTCGGTCGCGCTGATGCATCGTACCGATA 480
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CGCGCGATGTCGAGATTCCGAGCTTTTTGGAGCTGTTCCCGGATCGGTACGTTGATCCGG 540
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CTGTGTTTCCGCAGCTGCGCGAAGAGGGCACACTTGTGGACCAGGGTGATCGCCGTGCAA 600
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 TCGAGATCCCGATGAACTTTACCGCCTCGGACAGGGTGGACGAGCAGCGGTTGGCCTACT 660
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 GGCGGGAGGACATCGGTGTGAACCTGCACCACTGGCACTGGCATTTGGTGTATCCGGCCC 720
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 GCGGGCCGAATCGTATCGTGCGCAAGGATCGCCGGGGTGAGCTGTTCTACTACATGCACC 780
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 AGCAAACGATGGCTCGCTACAACATTGAGCGGTTTGCAAACGGAATGCCGCGGGTGGTTG 840
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CGTTCCGAAATTTCCGCGAAGCCATCCCCGAGGCGTACTTTCCCAAGATAACGCGCAGCT 900
consensus_3737#1 ----------------------------------GCAGAATCCCGAGGTTATGTTGAGCT 26
* * **** ** * * * ****
consensus_3737#0 CCGATGGACGTTCGTATCCAGCTCGGCATCCCAACGAAACGTTGAGTGATCTTAAACGAG 960
consensus_3737#1 --GATCGCTGCTTATAGACTATTTTCCGTTCTCCCACAG--------GATCTTAAACGAG 76
*** * * * ** * * * * * * * *************
consensus_3737#0 TTGAGGATGGTGTAATAGTATCGATCGCTGATATGGAGCTATGGACGACTAGGATTTTTG 1020
consensus_3737#1 TTGAGGATGGTGTAATAGTATCGATCGCTGATATGGAGCTATGGACGACTAGGATTTTTG 136
************************************************************
consensus_3737#0 AAGCAATTGATAACGGCTTCGCTCAATCGTCGAGCAATCAGCGTGTTCCATTGGACAATG 1080
consensus_3737#1 AAGCAATTGATAACGGCTTCGCTCAATCGTCGAGCAATCAGCGTGTTCCATTGGACAATG 196
************************************************************
consensus_3737#0 ACAGCGGGATCGATTTGCTGGGGAACATTGTGGAAGCGAGCACCCTGTCGGTGAATCCGC 1140
consensus_3737#1 ACAGCGGGATCGATTTGCTGGGGAACATTGTGGAAGCGAGCACCCTGTCGGTGAATCCGC 256
************************************************************
consensus_3737#0 AGTACTACGGAGATCTTCACAACAACGGGCACAACATCCTTGGCTACA-TACACGATCCG 1199
consensus_3737#1 AGTACTACGGAGATCTTCACAACAACGGGCACAACATCCTTGGCTACAATACACGATCCG 316
************************************************ ***********
consensus_3737#0 -GACAACTCGTTCCTGGAGGGTTTCGGAG---TGGTCGGAGACAACACGAC-GGCCATGC 1254
consensus_3737#1 CGACAACTCGTTCCTGGAGGGTTTCGGGAGGATGGTCGGAGACAACACGACCGGCCATGC 376
************************** ******************* ********
consensus_3737#0 GCGATCCGGTGTTTTATCGTTGGCATCAGCACATCGATGACATTTTCGTCCGTCACAAGC 1314
consensus_3737#1 GCGATCCGGTGTTTTATCGTTGGCATCAGCACATCGATGACATTTTCGTCCGTCACAAGC 436
************************************************************
consensus_3737#0 AACGGCTTCCGGCGTACACGGGACAGGAGCTA--GCATTTAACGATGTGGCGGTCGATAG 1372
consensus_3737#1 AACGGCTTCCGGCGTACACGGGACAGGAGGTACTGTACTGATCGCTGTATTACTTCCTAC 496
***************************** ** * * * * ** *** * **
consensus_3737#0 CTTCGAAATTCAACTGAACAAAGCGAACGCACCCGTCAACATTCTGCTAACGTTCTGGCA 1432
consensus_3737#1 TAACGGTTTT-------------------------------------------------- 506
** **
consensus_3737#0 AAGATCGCAGGTAAATCTCGGCACCGGGCTCGACTTCGGCCCGGAGGGCAATCTGTTTGC 1492
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 GACGTTCACGCACATTCAGCACGCACCGTACAGCTACCGCATACGGGTGAACAATCGTGC 1552
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CGGGGACACTAGACGCGGCACGGTACGCATATTCTTCGGACCGAAAACAAACGAACGTGG 1612
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CCAAACGTTGCCATTCCGCGAGCAGCGCCGTTTGATGGTGGAGTTGGACAAGTTTACCGT 1672
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CACACTTAATGCCGGTGCTAATACGATCGTGCGACGATCGGATCAATCGAGCGTATCGAT 1732
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CCCGTACGAGCGAACGTTCCGAAATGTGGCTGCCTCATCGCTGACACAGAATGAAGCCTT 1792
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CCAGTTCTGTAACTGTGGTTGGCCGAACCATATGCTTCTGCCGAAAGGTTCTCCCGACGG 1852
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 TATTGAGTATGACTTTTTCGTTATGGTGTCCGATTTTGCACAGGATCGCGTTGAGGATTT 1912
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CGACGAGAATGTTAACTGTAACGATGCTCACTCATTCTGTGGTCTGCGTGATCGTCGCTA 1972
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 TCCGGATTCACGTAGCATGGGCTATCCGTTCGATCGCTTCACGCCAGGAACGATTGGCAG 2032
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 TTTGCTAGATTTTACCAAACCTTACGTCAACATGTTGGTCACTCCGGTGAAGATACGGTT 2092
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CACCAATACGGTCATAGCGCGTGCTTAAAGTTCTCCTGATATTATTGACTAAACGCACTA 2152
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 CACTTATACTCTATTTACAAACGACTTTACTCGAAAATAAAATAACTGAACTATTTTCAT 2212
consensus_3737#1 ------------------------------------------------------------
consensus_3737#0 GCAAAAAAAA 2222
consensus_3737#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||