These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CCGCGGCGACCCTACAGCATAACTCCGGCACGAGCTCGGGCACGGTACGCGCCAGTGCATCGTCGGTCGCCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCAGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGT] [+] EMBL BM607125 [CCGCGGCGACCCTACAGCATAACTCCGGCACGAGCTCGGGCACGGTACGCGCCAGTGCATCGTCGGTCGCCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCAGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGT] consensusID : consensus_3754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CCGCGGACGCGTGGGCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCGGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGTGCTGATCTGCGTGCGAGCGTGCG] [+] EMBL BM626527 [CCGCGGACGCGTGGGCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCGGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGTGCTGATCTGCGTGCGAGCGTGCG] consensusID : consensus_3754#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [TACGGCACGAGGCGAGTGCACAGGACGTACCAGAGCGGCAGCAGCAGCAACCACAAGGCGCCACGGAGCGTAGCGTTGATTACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCNTNGNCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATNGTTGTGATGTTTTTATTTTGTNATATATNTGTGTGTNGTGTNGTGTGTGCGAGAGGGATAACNCATCCGAAAGTGAATTAAAACGACAACAACAAAAAAAACCCCTTTCAAGCCGGCTCCCNTTNCCCCACGAAACCCGGGGNATTGGACAGGCCTTTCACAAAGCACCACGGGNCCATTGGAAGGGTGCCACCAAGAACNGGTGCCATTGGCCAACTATGGTGCCACCGCGANTA] [+] EMBL BX619837 [TACGGCACGAGGCGAGTGCACAGGACGTACCAGAGCGGCAGCAGCAGCAACCACAAGGCGCCACGGAGCGTAGCGTTGATTACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCNTNGNCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATNGTTGTGATGTTTTTATTTTGTNATATATNTGTGTGTNGTGTNGTGTGTGCGAGAGGGATAACNCATCCGAAAGTGAATTAAAACGACAACAACAAAAAAAACCCCTTTCAAGCCGGCTCCCNTTNCCCCACGAAACCCGGGGNATTGGACAGGCCTTTCACAAAGCACCACGGGNCCATTGGAAGGGTGCCACCAAGAACNGGTGCCATTGGCCAACTATGGTGCCACCGCGANTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3754#0 CCGCGGCGACCCTACAGCATAACTCCGGCACGAGCTCGGGCACGGTACGCGCCAGTGCAT 60 consensus_3754#1 --------------------------------------------------------CCGC 4 consensus_3754#2 ----------------------------------------------------------TA 2 consensus_3754#0 CGTCG-GTCGCCGAGCGCACAGGACGTACCA-AGCGGCAGCAGCAGCAACCACAAGGCGC 118 consensus_3754#1 GGACGCGTGGGCGAGCGCACAGGACGTACCA-AGCGGCAGCAGCAGCAACCACAAGGCGC 63 consensus_3754#2 CGGCACG-AGGCGAGTGCACAGGACGTACCAGAGCGGCAGCAGCAGCAACCACAAGGCGC 61 * * * * **** *************** **************************** consensus_3754#0 CACA-AGCGTAGCGTTGAT-ACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCC 176 consensus_3754#1 CACA-AGCGTAGCGTTGAT-ACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCC 121 consensus_3754#2 CACGGAGCGTAGCGTTGATTACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCC 121 *** ************** **************************************** consensus_3754#0 ACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGC 236 consensus_3754#1 ACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGC 181 consensus_3754#2 ACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGC 181 ************************************************************ consensus_3754#0 AGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCA 296 consensus_3754#1 AGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCA 241 consensus_3754#2 AGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCA 241 ************************************************************ consensus_3754#0 CCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACT 356 consensus_3754#1 CCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACT 301 consensus_3754#2 CCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACT 301 ************************************************************ consensus_3754#0 TTTCCAAGCTGTGAATCAGCTGTTCCTG--CCTGTGCATTCCTTCCTGTTTCGCGAGTGG 414 consensus_3754#1 TTTCCAAGCTGTGAATCAGCTGTTCCTG--CCTGTGCATTCCTTCCTGTTTCGCGAGTGG 359 consensus_3754#2 TTTCCAAGCTGTGAATCAGCTGTTCNTNGNCCTGTGCATTCCTTCCTGTTTCGCGAGTGG 361 ************************* * ****************************** consensus_3754#0 ATCGTGTGACTGATGGTGTGAGGTGATTGTTGTGATGTTTTTATTTTGTTATATATTTGT 474 consensus_3754#1 ATCGTGTGACTGATGGTGTGAGGTGATTGTTG--ATGTTTTTATTTTGTTATATATTTGT 417 consensus_3754#2 ATCGTGTGACTGATGGTGTGAGGTGATNGTTGTGATGTTTTTATTTTGTNATATATNTGT 421 *************************** **** *************** ****** *** consensus_3754#0 GTGTG-TGTG-TGTGTGCGAGAGG-ATAACTCATC-GAAAGTGAATTAAAACGACAACAA 530 consensus_3754#1 GTGTG-TGTG-TGTGTGCGAGAGG-ATAACTCATC-GAAAGTGAATTAAAACGACAACAA 473 consensus_3754#2 GTGTNGTGTNGTGTGTGCGAGAGGGATAACNCATCCGAAAGTGAATTAAAACGACAACAA 481 **** *** ************* ***** **** ************************ consensus_3754#0 CAAAAAAA---CCCTTCAG--CGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACA 585 consensus_3754#1 CAAAAAAA---CCCTTCAG--CGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACA 528 consensus_3754#2 CAAAAAAAACCCCTTTCAAGCCGGCTCCCNTTNCCCCA---CGAAACCCGGGGNATTG-- 536 ******** ** **** ******** ** ** * ** * * * consensus_3754#0 AGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGT 645 consensus_3754#1 AGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGT 588 consensus_3754#2 -GACAGGCCTTTCACAAAGCACCACG-GGNCCATTGGAAGGGTGC-CACCAAGAACNGGT 593 **** * * **** * ** ***** ** ** **** ** *** consensus_3754#0 GTGTGCATTCAGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGT--------------- 690 consensus_3754#1 GTGTGCATTCGGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGTGCTGATCTGCGTGCG 648 consensus_3754#2 GC---CATTGGCCAACTATGGTGCCACCG-CGANTA------------------------ 625 * **** * * ** * * ** *** consensus_3754#0 -------- consensus_3754#1 AGCGTGCG 656 consensus_3754#2 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||