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Anopheles gambiae
cluster # 3754 cluster # 3754       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3754#0 length = 690 sequences # 1  
consensus_3754#1 length = 656 sequences # 1  
consensus_3754#2 length = 625 sequences # 1  

consensusID : consensus_3754#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence
                              [CCGCGGCGACCCTACAGCATAACTCCGGCACGAGCTCGGGCACGGTACGCGCCAGTGCATCGTCGGTCGCCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCAGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGT]

[+] EMBL BM607125             [CCGCGGCGACCCTACAGCATAACTCCGGCACGAGCTCGGGCACGGTACGCGCCAGTGCATCGTCGGTCGCCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCAGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGT]


>consensus_3754#0 CCGCGGCGACCCTACAGCATAACTCCGGCACGAGCTCGGGCACGGTACGCGCCAGTGCAT CGTCGGTCGCCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCA CAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAA GCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGC CCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTA TTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTC CAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTG TGACTGATGGTGTGAGGTGATTGTTGTGATGTTTTTATTTTGTTATATATTTGTGTGTGT GTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACC CTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGA GGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCAGCGG CGGCGGCGGCGGCGGCGACCCGTCAGCTGT



consensusID : consensus_3754#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence
                              [CCGCGGACGCGTGGGCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCGGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGTGCTGATCTGCGTGCGAGCGTGCG]

[+] EMBL BM626527             [CCGCGGACGCGTGGGCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCGGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGTGCTGATCTGCGTGCGAGCGTGCG]


>consensus_3754#1 CCGCGGACGCGTGGGCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGG CGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGC CACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAG CAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCC ACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGAC TTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGA TCGTGTGACTGATGGTGTGAGGTGATTGTTGATGTTTTTATTTTGTTATATATTTGTGTG TGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAA ACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCAT TGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCGG CGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGTGCTGATCTGCGTGCGAGCGTGCG



consensusID : consensus_3754#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence
                              [TACGGCACGAGGCGAGTGCACAGGACGTACCAGAGCGGCAGCAGCAGCAACCACAAGGCGCCACGGAGCGTAGCGTTGATTACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCNTNGNCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATNGTTGTGATGTTTTTATTTTGTNATATATNTGTGTGTNGTGTNGTGTGTGCGAGAGGGATAACNCATCCGAAAGTGAATTAAAACGACAACAACAAAAAAAACCCCTTTCAAGCCGGCTCCCNTTNCCCCACGAAACCCGGGGNATTGGACAGGCCTTTCACAAAGCACCACGGGNCCATTGGAAGGGTGCCACCAAGAACNGGTGCCATTGGCCAACTATGGTGCCACCGCGANTA]

[+] EMBL BX619837             [TACGGCACGAGGCGAGTGCACAGGACGTACCAGAGCGGCAGCAGCAGCAACCACAAGGCGCCACGGAGCGTAGCGTTGATTACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCNTNGNCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATNGTTGTGATGTTTTTATTTTGTNATATATNTGTGTGTNGTGTNGTGTGTGCGAGAGGGATAACNCATCCGAAAGTGAATTAAAACGACAACAACAAAAAAAACCCCTTTCAAGCCGGCTCCCNTTNCCCCACGAAACCCGGGGNATTGGACAGGCCTTTCACAAAGCACCACGGGNCCATTGGAAGGGTGCCACCAAGAACNGGTGCCATTGGCCAACTATGGTGCCACCGCGANTA]


>consensus_3754#2 TACGGCACGAGGCGAGTGCACAGGACGTACCAGAGCGGCAGCAGCAGCAACCACAAGGCG CCACGGAGCGTAGCGTTGATTACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGC CACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAG CAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCC ACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGAC TTTTCCAAGCTGTGAATCAGCTGTTCNTNGNCCTGTGCATTCCTTCCTGTTTCGCGAGTG GATCGTGTGACTGATGGTGTGAGGTGATNGTTGTGATGTTTTTATTTTGTNATATATNTG TGTGTNGTGTNGTGTGTGCGAGAGGGATAACNCATCCGAAAGTGAATTAAAACGACAACA ACAAAAAAAACCCCTTTCAAGCCGGCTCCCNTTNCCCCACGAAACCCGGGGNATTGGACA GGCCTTTCACAAAGCACCACGGGNCCATTGGAAGGGTGCCACCAAGAACNGGTGCCATTG GCCAACTATGGTGCCACCGCGANTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3754#0      CCGCGGCGACCCTACAGCATAACTCCGGCACGAGCTCGGGCACGGTACGCGCCAGTGCAT 60
consensus_3754#1      --------------------------------------------------------CCGC 4
consensus_3754#2      ----------------------------------------------------------TA 2
                                                                                  

consensus_3754#0      CGTCG-GTCGCCGAGCGCACAGGACGTACCA-AGCGGCAGCAGCAGCAACCACAAGGCGC 118
consensus_3754#1      GGACGCGTGGGCGAGCGCACAGGACGTACCA-AGCGGCAGCAGCAGCAACCACAAGGCGC 63
consensus_3754#2      CGGCACG-AGGCGAGTGCACAGGACGTACCAGAGCGGCAGCAGCAGCAACCACAAGGCGC 61
                       * *  *  * **** *************** ****************************

consensus_3754#0      CACA-AGCGTAGCGTTGAT-ACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCC 176
consensus_3754#1      CACA-AGCGTAGCGTTGAT-ACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCC 121
consensus_3754#2      CACGGAGCGTAGCGTTGATTACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCC 121
                      ***  ************** ****************************************

consensus_3754#0      ACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGC 236
consensus_3754#1      ACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGC 181
consensus_3754#2      ACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGC 181
                      ************************************************************

consensus_3754#0      AGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCA 296
consensus_3754#1      AGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCA 241
consensus_3754#2      AGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCA 241
                      ************************************************************

consensus_3754#0      CCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACT 356
consensus_3754#1      CCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACT 301
consensus_3754#2      CCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACT 301
                      ************************************************************

consensus_3754#0      TTTCCAAGCTGTGAATCAGCTGTTCCTG--CCTGTGCATTCCTTCCTGTTTCGCGAGTGG 414
consensus_3754#1      TTTCCAAGCTGTGAATCAGCTGTTCCTG--CCTGTGCATTCCTTCCTGTTTCGCGAGTGG 359
consensus_3754#2      TTTCCAAGCTGTGAATCAGCTGTTCNTNGNCCTGTGCATTCCTTCCTGTTTCGCGAGTGG 361
                      ************************* *   ******************************

consensus_3754#0      ATCGTGTGACTGATGGTGTGAGGTGATTGTTGTGATGTTTTTATTTTGTTATATATTTGT 474
consensus_3754#1      ATCGTGTGACTGATGGTGTGAGGTGATTGTTG--ATGTTTTTATTTTGTTATATATTTGT 417
consensus_3754#2      ATCGTGTGACTGATGGTGTGAGGTGATNGTTGTGATGTTTTTATTTTGTNATATATNTGT 421
                      *************************** ****  *************** ****** ***

consensus_3754#0      GTGTG-TGTG-TGTGTGCGAGAGG-ATAACTCATC-GAAAGTGAATTAAAACGACAACAA 530
consensus_3754#1      GTGTG-TGTG-TGTGTGCGAGAGG-ATAACTCATC-GAAAGTGAATTAAAACGACAACAA 473
consensus_3754#2      GTGTNGTGTNGTGTGTGCGAGAGGGATAACNCATCCGAAAGTGAATTAAAACGACAACAA 481
                      ****  ***  ************* ***** **** ************************

consensus_3754#0      CAAAAAAA---CCCTTCAG--CGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACA 585
consensus_3754#1      CAAAAAAA---CCCTTCAG--CGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACA 528
consensus_3754#2      CAAAAAAAACCCCTTTCAAGCCGGCTCCCNTTNCCCCA---CGAAACCCGGGGNATTG-- 536
                      ********   ** ****   ******** ** ** *    **  *      *  *    

consensus_3754#0      AGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGT 645
consensus_3754#1      AGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGT 588
consensus_3754#2      -GACAGGCCTTTCACAAAGCACCACG-GGNCCATTGGAAGGGTGC-CACCAAGAACNGGT 593
                       **** *    *      **** *   **  ***** **   **  ****  **   ***

consensus_3754#0      GTGTGCATTCAGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGT--------------- 690
consensus_3754#1      GTGTGCATTCGGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGTGCTGATCTGCGTGCG 648
consensus_3754#2      GC---CATTGGCCAACTATGGTGCCACCG-CGANTA------------------------ 625
                      *    ****   *  *   ** * *  ** ***                           

consensus_3754#0      --------
consensus_3754#1      AGCGTGCG 656
consensus_3754#2      --------
                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)