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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1082 fasta sequence
[CCGATTCCGGCGAGCAGCAGCGTCATCAGCGACAGCAACAGGCCGACGAGGAACGCGAGCTGAAAGATGGGGAAGGTGAGGAGGTGCAGCTTGCTGCTGGTGCTGGCGCTACCGGTGCGTGCTCGTCCGAGCGTGGAGTCGATGTAGCGAACGTGGAAATGCATGGCGGAGCAGGAGCGGGGATGGTAGAGCGACACAACGACCACGACAACGACGAGGACGACGAGTGTGGCGAGGAGGCGATCGAGCAACCGACCTCCTCCATGTCGACCGACGACGATGCGGCCTACTGCTCCGAGATGGAAACGTCCTCGGCCGTCTCCACACCGTCGGCCGCACCGGCCGCGACACTGGCGACCATTCCATCGCAGAATGTACCATTACCGGGCGGCAGCAGCAGCAGCAGCAGCAGCAGTCAGGTCGTGCCATCGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGAGCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTTGTGGCAGTGCAGCGCCGAAGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGCGCGACAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACGGGCCTCCGAAGAATGCTTGGGAGCGCGCTTGCACCCGTACCCAGCACCGTTTGGTCGACACGCCGCCCTCCCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGATGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGAATTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTG]
[+] EMBL BM624129 [CCGATTCCGGCGAGCAGCAGCGTCATCAGCGACAGCAACAGGCCGACGAGGAACGCGAGCTGAAAGATGGGGAAGGTGAGGAGGTGCAGCTTGCTGCTGGTGCTGGCGCTACCGGTGCGTGCTCGTCCGAGCGTGGAGTCGATGTAGCGAACGTGGAAATGCATGGCGGAGCAGGAGCGGGGATGGTAGAGCGACACAACGACCACGACAACGACGAGGACGACGAGTGTGGCGAGGAGGCGATCGAGCAACCGACCTCCTCCATGTCGACCGACGACGATGCGGCCTACTGCTCCGAGATGGAAACGTCCTCGGCCGTCTCCACACCGTCGGCCGCACCGGCCGCGACACTGGCGACCATTCCATCGCAGAATGTACCATTACCGGGCGGCAGCAGCAGCAGCAGCAGCAGCAGTCAGGTCGTGCCATCGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGAGCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTTGTGGCAGTGCAGCGCCGAAGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGCGCGACAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACGGGCCTCCGAAGAATGCTTG ]
[+] EMBL BM606817 [ ccgGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGAGCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTGGTGGCAGTGCAGCGGCGAAGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGCGCGATAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACGGGCCT GAAGAATGCTTGGGAGCGCGCTTGCACCCGTACCCAGCACCGTTTGGTCGACACGCCGCCCTCCCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGATGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGAATTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTG]
consensusID : consensus_3758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[GGCCTGAAGAATGCTTGGGAGCGCGCTTGCACTCGTACCCAGCATCATTTGGTCGACACGGCGCCCTCCCGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGTTGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGATTTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTGACCACCGATAGGAAATGGGATGAAAAAAAAAAAACAACCAGAAAACCATACAAAAGTGTGTAGGCATCGATTCCCAGCTAAACGCGTGCGCGCACACACACAGACACATGCATACACGTGCACGGTAGCGTTCAAATTCGGTTACACCTCCGTTTAGTAGTAGGA]
[+] EMBL BX605094 [GGCCTGAAGAATGCTTGGGAGCGCGCTTGCACTCGTACCCAGCATCATTTGGTCGACACGGCGCCCTCCCGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGTTGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGATTTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTGACCACCGATAGGAAATGGGATGAAAAAAAAAAAACAACCAGAAAACCATACAAAAGTGTGTAGGCATCGATTCCCAGCTAAACGCGTGCGCGCACACACACAGACACATGCATACACGTGCACGGTAGCGTTCAAATTCGGTTACACCTCCGTTTAGTAGTAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3758#0 CCGATTCCGGCGAGCAGCAGCGTCATCAGCGACAGCAACAGGCCGACGAGGAACGCGAGC 60
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 TGAAAGATGGGGAAGGTGAGGAGGTGCAGCTTGCTGCTGGTGCTGGCGCTACCGGTGCGT 120
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 GCTCGTCCGAGCGTGGAGTCGATGTAGCGAACGTGGAAATGCATGGCGGAGCAGGAGCGG 180
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 GGATGGTAGAGCGACACAACGACCACGACAACGACGAGGACGACGAGTGTGGCGAGGAGG 240
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 CGATCGAGCAACCGACCTCCTCCATGTCGACCGACGACGATGCGGCCTACTGCTCCGAGA 300
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 TGGAAACGTCCTCGGCCGTCTCCACACCGTCGGCCGCACCGGCCGCGACACTGGCGACCA 360
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 TTCCATCGCAGAATGTACCATTACCGGGCGGCAGCAGCAGCAGCAGCAGCAGCAGTCAGG 420
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 TCGTGCCATCGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGA 480
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 GCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTTGTGGCAGTGCAGCGCCGA 540
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 AGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGC 600
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 GCGACAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACG 660
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 GGCCTCCGAAGAATGCTTGGGAGCGCGCTTGCACCCGTACCCAGCACCGTTTGGTCGACA 720
consensus_3758#1 GGCCT--GAAGAATGCTTGGGAGCGCGCTTGCACTCGTACCCAGCATCATTTGGTCGACA 58
***** *************************** *********** * ***********
consensus_3758#0 CGCCGCCCTCCCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTTCCCCCCACACA 780
consensus_3758#1 CGGCGCCCTCCCGCCAGCCAGCCA----------------GCCAGCCTTCCCCCCACACA 102
** ********************* ********************
consensus_3758#0 AACCAGCTATTAATACTTAGATGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGA 840
consensus_3758#1 AACCAGCTATTAATACTTAGTTGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGA 162
******************** ***************************************
consensus_3758#0 TGAGGGCCGCGCACAGAGGACGACTGCTGCGGAATTTTAGGCCGATTGTTAATACTATTA 900
consensus_3758#1 TGAGGGCCGCGCACAGAGGACGACTGCTGCGGATTTTTAGGCCGATTGTTAATACTATTA 222
********************************* **************************
consensus_3758#0 ATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAAACCCGCTGT 960
consensus_3758#1 ATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAA-CCCGCTGT 281
*************************************************** ********
consensus_3758#0 CATTACTTCCTCTTACGACAAGAAAA-CAAGCAAAGATCAAGCTTCTGGTGTATTAGCAA 1019
consensus_3758#1 CATTACTTCCTCTTACGACAAGAAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAA 341
************************** *********************************
consensus_3758#0 TTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGA 1079
consensus_3758#1 TTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGA 401
************************************************************
consensus_3758#0 TTG--------------------------------------------------------- 1082
consensus_3758#1 TTGACCACCGATAGGAAATGGGATGAAAAAAAAAAAACAACCAGAAAACCATACAAAAGT 461
***
consensus_3758#0 ------------------------------------------------------------
consensus_3758#1 GTGTAGGCATCGATTCCCAGCTAAACGCGTGCGCGCACACACACAGACACATGCATACAC 521
consensus_3758#0 ------------------------------------------------
consensus_3758#1 GTGCACGGTAGCGTTCAAATTCGGTTACACCTCCGTTTAGTAGTAGGA 569
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||