These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 753 fasta sequence [GACCCACGCGTCCGCGGACGCGTGGGCGCAAACACGCCGCACACGTTCGTTTTCGTAGAAATTGTATTATTTAAACTTTCCTATTTATCTGCCACCGGCAAAAAGTGAATAAAAAACCTTCCTCCAGCCCCCCAAACATGGTGAACGATATGGAAACGGATACAGGCACCCCCGTGGATGATTATGGCGTGCTGAAGGGTGATCTCGTGTTCATACGCAACAACGAAAACCTCATGCAAGCCATCGATCAGATACAGGAAACGCTGGCCAACGTGAATCGGGAGTATGAAAAGTATCCGAACTTTACGGCGGAGGAAAAGGTTCGCTTCGACACGCTGTGTGCGTTTTGCGTGAACTCACTGTTCTGGATGCACGAGAAGATGCTCGGTCGACCGAACACCGTCATGGATGACATTAAAGCGGATCTCGACCGGGTGCGGGAAGCGATGAAACGGTTGCAGACCATACACGATAACCTCACCAAGCGGCCCCGTCTCGATCAGCCGGCCGCGCAAAGGTTCGTGCGGGCCGGGCTGTACGATGCTAACAACACGGAAAGCGACAAACAGAACGATGCACCACCAAACAAAAAGAAGCGCCGGGAGAAGAAAGCCGAACCGGAATGAGTAGAGTAGCACCCGGCCTGTGTGCTACTGGGGTAGGTACAATAAGAGATGTTGTATGTGGATAGACGAGATTTAAACATGTACTAAATAACGTAAGGCAGATGTCGTCAGGGATAATAAAACAAAG] [+] EMBL BM593873 [GACCCACGCGTCCGCGGACGCGTGGGCGCAAACACGCCGCACACGTTCGTTTTCGTAGAAATTGTATTATTTAAACTTTCCTATTTATCTGCCACCGGCAAAAAGTGAATAAAAAACCTTCCTCCAGCCCCCCAAACATGGTGAACGATATGGAAACGGATACAGGCACCCCCGTGGATGATTATGGCGTGCTGAAGGGTGATCTCGTGTTCATACGCAACAACGAAAACCTCATGCAAGCCATCGATCAGATACAGGAAACGCTGGCCAACGTGAATCGGGAGTATGAAAAGTATCCGAACTTTACGGCGGAGGAAAAGGTTCGCTTCGACACGCTGTGTGCGTTTTGCGTGAACTCACTGTTCTGGATGCACGAGAAGATGCTCGGTCGACCGAACACCGTCATGGATGACATTAAAGCGGATCTCGACCGGGTGCGGGAAGCGATGAAACGGTTGCAGACCATACACGATAACCTCACCAAGCGGCCCCGTCTCGATCAGCCGGCCGCGCAAAGGTTCGTGCGGGCCGGGCTGTACGATGCTAACAACACGGAAAGCGACAAACAGAACGATGCACCACCAAACAAAAAGAAGCGCCGGGAGAAGAAAGCCGAACCGGAATGAGTAGAGTAGCACCCGGCCTG ] [+] EMBL BX623952 [ TTCGTTTTCGTAGAAATTGTATTATTTAAACTTTCCTATTTATCTGCCACCGGCAAAAAGTGAATAAAAAACCTTCCTCCAGCCCCCCAAACATGGTGAACGATATGGAAACGGATACAGGCACCCCCGTGGATGATTATGGCGTGCTGAAGGGTGATCTCGTGTTCATACGCAACAACGAAAACCTCATGCAAGCCATCGATCAGATACAGGAAACGCTGGCCAACGTGAATCGGGAGTATGAAAAGTATCCGAACTTTACGGCGGAGGAAAAGGTTCGCTTCGACACGCTGTGTGCGTTTTGCGTGAACTCACTGTTCTGGATGCACGAGAAGATGCTCGGTCGACCGAACACCGTCATGGATGACATTAAAGCGGATCTCGACCGGGTGCGGGAAGCGATGAAACGGTTGCAGACCATACACGATAACCTCACCAAGCGGCCCCGTCTCGATCAGCCGGCCGCGCAAAGGTTCGTGCGGGCCGGGCTGTACGATGCTAACAACACGGAAAGCGACAAACAGAACGATGCACCACCAAACAAAAAGAAGCGCCGGGAGAAGAAAGCCGAACCGGAATGAGTAGAGTAGCACCCGGCCTGTGTGCTACTGGGGTAGGTACAATAAGAGATGTTGTATGTGGATAGACGAGATTTAAACATGTACTAAATAACGTAAGGCAGATGTCGTCAGGGATAATAAAACAAAG] consensusID : consensus_3759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [ANTGCCGAGGCATCTGATGTTGGAGCTGGCGCAACATGCTGTTTTTTTTTTNTTTTTTTGGCCGGTGCATCGCATACACGCGGCACGCGTTCGCTTTCGTAGAAATTGTATTATTTAAGTTTCCTAATTATCTGCCACCGGCAAAAAGTGAATTTAAACCTTCCTCAGCCTCTAAACATGGTGAACGATATGGAAACGGATATAGGCACCCCCGTGGATGATTATGGCGTGTTGAAGTGGAGATCCTCGTTGTTCATACCCAACAACTGAAAACCTCATTGCAATGCCATCGATCAGATACATGGTAACGCCTGGCAACTGTGAATCTGGNGGAGTATTGAAAAGTATCCGAACTTATACCGGCGGAGTGCAAAAGTGGTGCGCTTCGACCACCGCTTGGTGTGCCGTNTTGCGGTGAAACCTCACTTGGTTCTTGGGATTGCACGAGAAAGGATGCTCGGGTCGACCCGAACACCGGCATTGGGATGGACCATTAAAGGCTGGATCTCGATAGAGTG] [+] EMBL AL693456 [ANTGCCGAGGCATCTGATGTTGGAGCTGGCGCAACATGCTGTTTTTTTTTTNTTTTTTTGGCCGGTGCATCGCATACACGCGGCACGCGTTCGCTTTCGTAGAAATTGTATTATTTAAGTTTCCTAATTATCTGCCACCGGCAAAAAGTGAATTTAAACCTTCCTCAGCCTCTAAACATGGTGAACGATATGGAAACGGATATAGGCACCCCCGTGGATGATTATGGCGTGTTGAAGTGGAGATCCTCGTTGTTCATACCCAACAACTGAAAACCTCATTGCAATGCCATCGATCAGATACATGGTAACGCCTGGCAACTGTGAATCTGGNGGAGTATTGAAAAGTATCCGAACTTATACCGGCGGAGTGCAAAAGTGGTGCGCTTCGACCACCGCTTGGTGTGCCGTNTTGCGGTGAAACCTCACTTGGTTCTTGGGATTGCACGAGAAAGGATGCTCGGGTCGACCCGAACACCGGCATTGGGATGGACCATTAAAGGCTGGATCTCGATAGAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3759#0 --------------------------------------------GACCCACGCGTCCGCG 16 consensus_3759#1 ANTGCCGAGGCATCTGATGTTGGAGCTGGCGCAACATGCTGTTTTTTTTTTNTTTTTTTG 60 * * consensus_3759#0 GACGCGTGGGCGCAAACACGCCGCACACGTTCGTTTTCGTAGAAATTGTATTATTTAAAC 76 consensus_3759#1 GCCGGTGCATCGCATACACGCGGCACGCGTTCGCTTTCGTAGAAATTGTATTATTTAAG- 119 * ** **** ****** **** ****** ************************ consensus_3759#0 TTTCCTATTTATCTGCCACCGGCAAAAAGTGAATAAAAAACCTTCCTCCAGCCCCCCAAA 136 consensus_3759#1 TTTCCTAATTATCTGCCACCGGCAAAAAGTGAATTTAAA-CCTTCCTCAG--CCTCTAAA 176 ******* ************************** *** ******** ** * *** consensus_3759#0 CATGGTGAACGATATGGAAACGGATACAGGCACCCCCGTGGATGATTATGGCGTGCTGAA 196 consensus_3759#1 CATGGTGAACGATATGGAAACGGATATAGGCACCCCCGTGGATGATTATGGCGTGTTGAA 236 ************************** **************************** **** consensus_3759#0 G-GGTGATC-TCGT-GTTCATACGCAACAAC-GAAAACCTCAT-GCAA-GCCATCGATCA 250 consensus_3759#1 GTGGAGATCCTCGTTGTTCATACCCAACAACTGAAAACCTCATTGCAATGCCATCGATCA 296 * ** **** **** ******** ******* *********** **** *********** consensus_3759#0 GATACA-GGAAACGCTGGCCAAC-GTGAATC---GGGAGTAT-GAAAAGTATCCGAACTT 304 consensus_3759#1 GATACATGGTAACGCCTGGCAACTGTGAATCTGGNGGAGTATTGAAAAGTATCCGAACTT 356 ****** ** ***** * **** ******* ******* ***************** consensus_3759#0 -TAC-GGCGGAG----GAAAAGGTTCGCTTCGACA--CGCT--GTGTGC-GTTTTGCG-T 352 consensus_3759#1 ATACCGGCGGAGTGCAAAAGTGGTGCGCTTCGACCACCGCTTGGTGTGCCGTNTTGCGGT 416 *** ******* ** *** ********* **** ****** ** ***** * consensus_3759#0 GAA--CTCACT--GTTCTGGA---TGCACGAGAA--GATGCTCGG-TCGACC-GAACACC 401 consensus_3759#1 GAAACCTCACTTGGTTCTTGGGATTGCACGAGAAAGGATGCTCGGGTCGACCCGAACACC 476 *** ****** ***** * ********** ********* ****** ******* consensus_3759#0 GTCAT--GGATGA--CATTAAAG--CGGATCTCGACCGGGTGCGGGAAGCGATGAAACGG 455 consensus_3759#1 GGCATTGGGATGGACCATTAAAGGCTGGATCTCGATAGAGTG------------------ 518 * *** ***** ******** ********* * *** consensus_3759#0 TTGCAGACCATACACGATAACCTCACCAAGCGGCCCCGTCTCGATCAGCCGGCCGCGCAA 515 consensus_3759#1 ------------------------------------------------------------ consensus_3759#0 AGGTTCGTGCGGGCCGGGCTGTACGATGCTAACAACACGGAAAGCGACAAACAGAACGAT 575 consensus_3759#1 ------------------------------------------------------------ consensus_3759#0 GCACCACCAAACAAAAAGAAGCGCCGGGAGAAGAAAGCCGAACCGGAATGAGTAGAGTAG 635 consensus_3759#1 ------------------------------------------------------------ consensus_3759#0 CACCCGGCCTGTGTGCTACTGGGGTAGGTACAATAAGAGATGTTGTATGTGGATAGACGA 695 consensus_3759#1 ------------------------------------------------------------ consensus_3759#0 GATTTAAACATGTACTAAATAACGTAAGGCAGATGTCGTCAGGGATAATAAAACAAAG 753 consensus_3759#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||