These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence [AGGCAGAATCCGCACGATGTATCCTCTTCCCCCCCCGTTGTTGACCCGGTGACATATTATATAACCTCATAGATCCTCAGCGTCCTAGGGCCAAACAGGTTGTGGGATTACGACCCACCAGCAGCTGAACATAGAGGCACTCAAAGCAACACGAAGGTTCACATTTAATACTGGCCCGGCAAACAGGACGCCACAGAGCGAAACGTTCTCACGCAGGTACCAGGTTAGGNTTAGGCTTTGCATGGCCCCCCAAGGGCCCCATGGGANNCGAGCGAGGAGCTGAGCGAACCACCAATTTCCAACTCTCTGCCGGGCTAGGGCAGCAGGCGAGATAGCGAAATTTGGTGGCGGNCCCCCCNAAAACCTGGGCGAACNAACGAACGAACCGACGCAAATTCAGGACAGTACTGTTCACCGANATANGACGGTAAANAGCTTGAGACCNACTGCTTTAGCGNGNGTTACGANGAGCGNGCGGGNAGGAACAACCGAGCGCCGNGAGACGGGCGCAGCGCGACGCAGCGNTGGGCGAGCAGNCCGNNGCTTCTGCGNCCTGGNGGNTNGGCNCNGGCNNNGANCGGNGAGCGGGGGNTNANCNAGCGAGAGNGGGNGGGCGGGCGGGNGGGTCAGGGGANCCCGCCGAAGNGAGTGGACGGGGGGGAANCGAAAGACCGGCGGNGGNTGGCAGGAACNCGGAGGCGGGAAAAAAACAGNCGGNGGCGGGCCCCACGNCTAGGGACGCGNGACCCNCCAGNGNNCGNGAAGGGCAAGAGACTGCTGGGAGGCCCAACAGGGGGGGNCGGCAGCACGGCAANGNCGCGGGCGCNCGAGCAGGCNGGAAAGCGTGGGGCGNGACGGAAAGTGGGNNGCCCGAGCGCGTAGGANAGGCGCGCNGCCCCGCGCCGGGACGGTNNCGNGACCNCAGNCAGAGGCAGGACCANGGANGCCGGNCCA] [+] EMBL BX466564 [AGGCAGAATCCGCACGATGTATCCTCTTCCCCCCCCGTTGTTGACCCGGTGACATATTATATAACCTCATAGATCCTCAGCGTCCTAGGGCCAAACAGGTTGTGGGATTACGACCCACCAGCAGCTGAACATAGAGGCACTCAAAGCAACACGAAGGTTCACATTTAATACTGGCCCGGCAAACAGGACGCCACAGAGCGAAACGTTCTCACGCAGGTACCAGGTTAGGNTTAGGCTTTGCATGGCCCCCCAAGGGCCCCATGGGANNCGAGCGAGGAGCTGAGCGAACCACCAATTTCCAACTCTCTGCCGGGCTAGGGCAGCAGGCGAGATAGCGAAATTTGGTGGCGGNCCCCCCNAAAACCTGGGCGAACNAACGAACGAACCGACGCAAATTCAGGACAGTACTGTTCACCGANATANGACGGTAAANAGCTTGAGACCNACTGCTTTAGCGNGNGTTACGANGAGCGNGCGGGNAGGAACAACCGAGCGCCGNGAGACGGGCGCAGCGCGACGCAGCGNTGGGCGAGCAGNCCGNNGCTTCTGCGNCCTGGNGGNTNGGCNCNGGCNNNGANCGGNGAGCGGGGGNTNANCNAGCGAGAGNGGGNGGGCGGGCGGGNGGGTCAGGGGANCCCGCCGAAGNGAGTGGACGGGGGGGAANCGAAAGACCGGCGGNGGNTGGCAGGAACNCGGAGGCGGGAAAAAAACAGNCGGNGGCGGGCCCCACGNCTAGGGACGCGNGACCCNCCAGNGNNCGNGAAGGGCAAGAGACTGCTGGGAGGCCCAACAGGGGGGGNCGGCAGCACGGCAANGNCGCGGGCGCNCGAGCAGGCNGGAAAGCGTGGGGCGNGACGGAAAGTGGGNNGCCCGAGCGCGTAGGANAGGCGCGCNGCCCCGCGCCGGGACGGTNNCGNGACCNCAGNCAGAGGCAGGACCANGGANGCCGGNCCA] consensusID : consensus_3761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 867 fasta sequence [CCGGCGATCGGAAAAATCGAACCGAAAGCGTGCATATTTATAACCTCATAGATCCTCAGCGTCCTAGGGCCAAACAGGTTGTGGGATTACGACCCACCAGCAGCTGAAATAGAGGCACTCAAAGCAACACGAAGGTTCACATTTAATACTGGCCCGGCAAACAGGACGCCACAGAGCGAAACTTCTCACGCAGTACCAGTTAGGTTAGGTTTGCATGGCCCCCCAAGGGCCCCATGGAGGAGGAGGAGTGAGCGAACCACCAATTTCCAATCTCTGCCGGGTGGAGAGCAGTAGGATTGTGCGCCCCAAACTGCGACACGAGAACAGAATCAGAATATTTCACGAATTAATAAGTTAACACTCTTACGGGTAAACAAGAGACACGAGCAAACGAAAAAAAAAAACAACAATTCGCGGGTGCCGCACGGCGGGTACTTAAGCGCGGAACCGAATCGGACAACTATTTAAGAGGAAAGGCGCACTGTTTTAGATAGAATTTACAATGCAAACACGGCAACGATTCGTATACCACTTGCGCCATTTGCGCTTTTGTGCGCCGGGTTTGTTTACAAACCGCGAGCTCTCACCCGGTACGTCATCGTGACTTGACGCATGCCAGAACGGGACACAACACAACCTCTACTTACCTTTGGCATTGTTTGCAGAATCGACTGTGCGTGTGAATGTGTGTCTACAACTAGTCGGGTTGAAATTCGCAAGCATTCTGCGCATGGTAAGAAATGACTGGATCGAGAAAAAAAACTCCTCATATTAAATCGAACGTTCCAAAATAATAATAATAACGTACAACCGAACGAAGCAGACGCCCAGCCGAGGGACGCGCTCCCCAATGCAATGGTTGGATTT] [+] EMBL BM606720 [CCGGCGATCGGAAAAATCGAACCGAAAGCGTGCATATTTATAACCTCATAGATCCTCAGCGTCCTAGGGCCAAACAGGTTGTGGGATTACGACCCACCAGCAGCTGAAATAGAGGCACTCAAAGCAACACGAAGGTTCACATTTAATACTGGCCCGGCAAACAGGACGCCACAGAGCGAAACTTCTCACGCAGTACCAGTTAGGTTAGGTTTGCATGGCCCCCCAAGGGCCCCATGGAGGAGGAGGAGTGAGCGAACCACCAATTTCCAATCTCTGCCGGGTGGAGAGCAGTAGGATTGTGCGCCCCAAACTGCGACACGAGAACAGAATCAGAATATTTCACGAATTAATAAGTTAACACTCTTACGGGTAAACAAGAGACACGAGCAAACGAAAAAAAAAAACAACAATTCGCGGGTGCCGCACGGCGGGTACTTAAGCGCGGAACCGAATCGGACAACTATTTAAGAGGAAAGGCGCACTGTTTTAGATAGAATTTACAATGCAAACACGGCAACGATTCGTATACCACTTGCGCCATTTGCGCTTTTGTGCGCCGGGTTTGTTTACAAACCGCGAGCTCTCACCCGGTACGTCATCGTGACTTGACGCATGCCAGAACGGGACACAACACAACCTCTACTTACCTTTGGCATTGTTTGCAGAATCGAC ] [+] EMBL BX620154 [ TACTAGTTAGGTTAGGTTTGCATGGCCCCCCAAGGGCCCCATGGAGGAGGAGGAGTGAGCGAACCACCAATTTCCAATCTCTGCCGGGTGGAGAGCAGTAGGATTGTGCGTCCCAAACTGCGACACGAGAACAGAAACAGAATATTTCACGAATTAATAAGTTAACACTCTTACGGGTAAACAAGAGACACGAGCAAACG AAAAAAAAACAACAATTCGCGGGTGCCGCACGGCGGGTACTTAAGCGCAGAACCGAATCGGACAACTATTTAAGAGGAAAGGCGCACTGTTTTAGATAGAATTTACAATGCAAACACGGCAACGATTCGTATACCACTTGCGCCATTTGCGCTTTTGTGCGCCGGGTTTGTTTACAAACCGCGAGCTCTCACCCGGTACGTCATCGTGACTTGACGCATGCCAGAACGGGACACAACACAACCTCTACTTACC TTGGCATTGTTTGCAGAATCGACTGTGCGTGTGAATGTGTGTCTACAACTAGTCGGGTTGAAATTCGCAAGCATTCTGCGCATGGTAAGAAATGACTGGATCGAGAAAAAAAACTCCTCATATTAAATCGAACGTTCCAAAATAATAATAATAACGTACAACCGAACGAAGCAGACGCCCAGCCGAGGGACGCGCTCCCCAATGCAATGGTTGGATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3761#0 AGGCAGAATCCGCACGATGTATCCTCTTCCCCCCCCGTTGTTGACCCGGTGACATAT--- 57 consensus_3761#1 ------------------------CCGGCGATCGGAAAAATCGAACCGAAAGCGTGCATA 36 * * * * ** *** * * consensus_3761#0 TATATAACCTCATAGATCCTCAGCGTCCTAGGGCCAAACAGGTTGTGGGATTACGACCCA 117 consensus_3761#1 TTTATAACCTCATAGATCCTCAGCGTCCTAGGGCCAAACAGGTTGTGGGATTACGACCCA 96 * ********************************************************** consensus_3761#0 CCAGCAGCTGAACATAGAGGCACTCAAAGCAACACGAAGGTTCACATTTAATACTGGCCC 177 consensus_3761#1 CCAGCAGCTGAA-ATAGAGGCACTCAAAGCAACACGAAGGTTCACATTTAATACTGGCCC 155 ************ *********************************************** consensus_3761#0 GGCAAACAGGACGCCACAGAGCGAAACGTTCTCACGCAGGTACCAGGTTAGGNTTAGGCT 237 consensus_3761#1 GGCAAACAGGACGCCACAGAGCGAAAC-TTCTCACGCAG-TACCAG--TTAGGTTAGG-T 210 *************************** *********** ****** * * ***** * consensus_3761#0 TTGCATGGCCCCCCAAGGGCCCCATGGGANNCGAGCGAGGAGCTGAGCGAACCACCAATT 297 consensus_3761#1 TTGCATGGCCCCCCAAGGGCCCCATGGAGGAGG----AGGAG-TGAGCGAACCACCAATT 265 *************************** * ***** ***************** consensus_3761#0 TCCAACTCTCTGCCGGGCT-AGGGCAGCAGGCGAGATAGCGAAATTTGGTGGCGGNCCCC 356 consensus_3761#1 TCCAA-TCTCTGCCGGGTGGAGAGCAGTAGGATTGTGCGCCCCAAACTGCGAC--ACGAG 322 ***** *********** ** **** *** * ** * * * * * consensus_3761#0 CCNAAAACCTGGGCGA---ACNAACGAACGAACCGACGCAAATTCAGGACAGTACTGTTC 413 consensus_3761#1 AACAGAATCAGAATATTTCACGAATTAATAAGTTAACACTCTTACGGGTAAACAAGAGAC 382 * ** * * ** ** ** * ** * * * ** * * * consensus_3761#0 ACCGANATANGACGGTAAANAGCTTGAGACCN--ACTGCTTTAGCGNGNGTTACGANGAG 471 consensus_3761#1 ACGAGCAAACGAAAAAAAAAAACAACAATTCGCGGGTGCCGCACGGCGGGTACTTAAGCG 442 ** * * ** *** * * * * *** * * * ** * * * consensus_3761#0 CGNG-CGGGNAGGAACAACCGAGCGCCGNGAGACGGGCGCAGCGCGACGCAGCGNTGGGC 530 consensus_3761#1 CGGAACCGAATCGGACAACTATTTAAGAGGAAAGGCGCACTGTTTTAGATAGAATTTACA 502 ** * * * ***** ** * * ** * * * ** * consensus_3761#0 GAGCAGNCCGNNGCTTCTGCGNCCTGGNGGNTNGGCNCNGGCNNNGANCGGNGAGCGGGG 590 consensus_3761#1 ATGCAAAC--ACGGCAACGATTCGTATACCACTTGCGCCATTTGCG-CTTTTGTGCGCCG 559 *** * * * * * ** * * * *** * consensus_3761#0 GNTNANCNAGCGAGAGNGGGNGGGCGGGCGGGNGGGTCAGGGGANCCCGCCGAAGNGAGT 650 consensus_3761#1 GGTTTGTTTACAAACCGCGAGCTCTCACCCGGTACGTCATCGTGACTTGACGCA-TGCCA 618 * * * * * * ** **** * * * ** * * consensus_3761#0 GGACGGGGGGGAANCGAAAGACCGGCGGNGGNTGGCAG-GAACNCGGAGGCGGGAAAAAA 709 consensus_3761#1 GAACGGGACACAACACAACCTCTACTTACCTTTGGCATTGTTTGCAGAATCG---ACTGT 675 * ***** ** ** * ***** * * ** ** * consensus_3761#0 ACAGNCGGNGGCGGGCCCCACGNCTAGGGACGC-GNGACCCNCCAGNGNNC-GNGAAGGG 767 consensus_3761#1 GCGTGTGAATGTGTGTCT-ACAACTAGTCGGGTTGAAATTCGCAAGCATTCTGCGCATGG 734 * * * * * * ** **** * * * * * ** * * * * ** consensus_3761#0 CAAGAGACTGCTGGGAGGCCCAACAGGGGGGGNCGGCAGCACGGCAANGNCGCGGGCGCN 827 consensus_3761#1 TAAGAAATGACTGGA----TCGAGAAAAAAAACT--CCTCATATTAAA-TCGAACGTTCC 787 **** * **** * * * * ** ** ** * * consensus_3761#0 CGAGCAGGCNGGAAAGCGTGGGGCGNGACGGAAAGTGGGNNGCCCGAGCGCGTAGGANAG 887 consensus_3761#1 AAAATAATAATAATAACGTACAACCGAACGAAGC---AGACGCCCAGCCG------AGGG 838 * * * * *** * *** * * **** ** * * consensus_3761#0 GCGCGCNGCCCCGCGCCGGGACGGTNNCGNGACCNCAGNCAGAGGCAGGACCANGGANGC 947 consensus_3761#1 ACGCGCTCCCCAATGCAATGGTTGGATTT------------------------------- 867 ***** *** ** * * consensus_3761#0 CGGNCCA 954 consensus_3761#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||