cluster # 3763

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3763 cluster # 3763 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3763#0 length = 688 sequences # 1

consensus_3763#1 length = 660 sequences # 2

consensusID : consensus_3763#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [CCGCCCACGCGTCCGTTCCATATTGCTAACGCGAGCAGCACATTGACGAATTCGGCTGGCCCATTGCTGATGCTGCTTGTGTGTGTGAGTGTGTAATATGATGAAAGTTCCTTAAAAACCGCACACAAAGCACAGAGAGCGGGTCATTCGAGTCTCGATCACAGGGGTGCATCAAACCGAACCAAACTAGCTGCGAATGCACCAGCGTTAAGGAAACTGCACATTCAAACTGCACACTGCGGGGTCAGAGTAAAGTAAAACAAGCGGCCTCGCTAGCAACAGCGTATATTACACATGCAACAGCGCACGCGAAAAAGCGAAAGCTTCTGGTGTGCAGGCCATTGCGCGCTTGTTGACACGAAAAACTGCTTTTCCTGCCCGCCACCCTCTCGGTGAGGTCGTGCCCCACCGGTCAAGAAGGAAGTGAATTATACTGCCGCGAGTGAAAACCGTTGCAAATTGCCAGATTTTCAGATACACGCGGAGAAGCTGGAGGGAATTGCATCCACCGCGTAGCAGCTGCATAGAGAAAGTAGCGTTTGCAGCAGCATCATTAACAGCAGTGCCGGTGTGTTTGTGTCTGTGTGTTGAGTGTTTTCCTTGTTTCCGTGGCCTACTAGCGGGCGGGTACATTGGGGTTGCAAAAGAACAAAAGAAAACGTTTAATGTCATCCCGCGTAGGGTTTGC]

[+] EMBL BM606696             [CCGCCCACGCGTCCGTTCCATATTGCTAACGCGAGCAGCACATTGACGAATTCGGCTGGCCCATTGCTGATGCTGCTTGTGTGTGTGAGTGTGTAATATGATGAAAGTTCCTTAAAAACCGCACACAAAGCACAGAGAGCGGGTCATTCGAGTCTCGATCACAGGGGTGCATCAAACCGAACCAAACTAGCTGCGAATGCACCAGCGTTAAGGAAACTGCACATTCAAACTGCACACTGCGGGGTCAGAGTAAAGTAAAACAAGCGGCCTCGCTAGCAACAGCGTATATTACACATGCAACAGCGCACGCGAAAAAGCGAAAGCTTCTGGTGTGCAGGCCATTGCGCGCTTGTTGACACGAAAAACTGCTTTTCCTGCCCGCCACCCTCTCGGTGAGGTCGTGCCCCACCGGTCAAGAAGGAAGTGAATTATACTGCCGCGAGTGAAAACCGTTGCAAATTGCCAGATTTTCAGATACACGCGGAGAAGCTGGAGGGAATTGCATCCACCGCGTAGCAGCTGCATAGAGAAAGTAGCGTTTGCAGCAGCATCATTAACAGCAGTGCCGGTGTGTTTGTGTCTGTGTGTTGAGTGTTTTCCTTGTTTCCGTGGCCTACTAGCGGGCGGGTACATTGGGGTTGCAAAAGAACAAAAGAAAACGTTTAATGTCATCCCGCGTAGGGTTTGC]




>consensus_3763#0
CCGCCCACGCGTCCGTTCCATATTGCTAACGCGAGCAGCACATTGACGAATTCGGCTGGC
CCATTGCTGATGCTGCTTGTGTGTGTGAGTGTGTAATATGATGAAAGTTCCTTAAAAACC
GCACACAAAGCACAGAGAGCGGGTCATTCGAGTCTCGATCACAGGGGTGCATCAAACCGA
ACCAAACTAGCTGCGAATGCACCAGCGTTAAGGAAACTGCACATTCAAACTGCACACTGC
GGGGTCAGAGTAAAGTAAAACAAGCGGCCTCGCTAGCAACAGCGTATATTACACATGCAA
CAGCGCACGCGAAAAAGCGAAAGCTTCTGGTGTGCAGGCCATTGCGCGCTTGTTGACACG
AAAAACTGCTTTTCCTGCCCGCCACCCTCTCGGTGAGGTCGTGCCCCACCGGTCAAGAAG
GAAGTGAATTATACTGCCGCGAGTGAAAACCGTTGCAAATTGCCAGATTTTCAGATACAC
GCGGAGAAGCTGGAGGGAATTGCATCCACCGCGTAGCAGCTGCATAGAGAAAGTAGCGTT
TGCAGCAGCATCATTAACAGCAGTGCCGGTGTGTTTGTGTCTGTGTGTTGAGTGTTTTCC
TTGTTTCCGTGGCCTACTAGCGGGCGGGTACATTGGGGTTGCAAAAGAACAAAAGAAAAC
GTTTAATGTCATCCCGCGTAGGGTTTGC

consensusID : consensus_3763#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 660
fasta sequence

                              [GGCTTGGACACATCGGAACCGTACCGAAGGCGAATGTCCGTGAAACTCCACTTCAATTAACGCATTTCGGAATTCGGCTGGCCCATTGCTGATGCTGCTTTGCAAAGTGTGTGTGTGAGTGTGTAATATGATGAAAGTTCCTTAAAAACCGCACACAAAGCACAGAGAGCGGGTCATTCGAGTCTCGATCACAGGGGTGCATCAAACCGAACCAAACCAGCTGCGAATGCACCAGCGTTAAGGGAACTGCACATTCAAACTGCACACTACGGGGTCAGAGTAAAGTAAAACAAGCGGCCTCGCTAGCAATAACGTATATTACACATGCAACAGCGCACGCGAAAAAGCGAAAGCTTCTGGTGTGCAGGCCATTGCGCGCTTGTTGACACGAAAAACGGCTTTTCCTGCCCGCCACCCTCTCGGTGAGGTCGTGCCCCACCGGTCAAGAAGGAAGTGAATTATACTGCCGCGAGTGAAAACCGTTGCAAATTGCCAGATTTTCAGATACACGCGGAGAAGCTGGAGGGAATTGCATCCACCGCGTAGCAGCTGCATAGAGAAAGTAGCGTTTGCAGCAGCATCATTAACAGCAGTGCCGGTGTGTTTGTGTCTGTGTTGAGTGTTTTCCTTGTTTCCGTGGCCTACTAGCGGGCGGGTAAA]

[+] EMBL BX621468             [GGCTTGGACACATCGGAACCGTACCGAAGGCGAATGTCCGTGAAACTCCACTTCAATTAACGCATTTCGGAATTCGGCTGGCCCATTGCTGATGCTGCTTTGCAAAGTGTGTGTGTGAGTGTGTAATATGATGAAAGTTCCTTAAAAACCGCACACAAAGCACAGAGAGCGGGTCATTCGAGTCTCGATCACAGGGGTGCATCAAACCGAACCAAACCAGCTGCGAATGCACCAGCGTTAAGGGAACTGCACATTCAAACTGCACACTACGGGGTCAGAGTAAAGTAAAACAAGCGGCCTCGCTAGCAATAACGTATATTACACATGCAACAGCGCACGCGAAAAAGCGAAAGCTTCTGGTGTGCAGGCCATTGCGCGCTTGTTGACACGAAAAACGGCTTTTCCTGCCCGCCACCCTCTCGGTGAGGTCGTGCCCCACCGGTCAAGAAGGAAGTGAATTATACTGCCGCGAGTGAAAACCGTTGCAAATTGCCAGATTTTCAGATACACGCGGAGAAGCTGGAGGGAATTGCATCCACCGCGTAGCAGCTGCATAGAGAAAGTAGCGTTTGCAGCAGCATCATTAACAGCAGTGCCGGTGTGTTTGTGTCTGTGTTGAGTGTTTTCCTTGTTTCCGTGGCCTACTAGCGGGCGGGTAAA]
[+] EMBL BM618124             [                                                                                                                                                                                                                                                                                                                                                  tCGAAAAAGCGAAAGCTTCTGGTGTGCAGGCCATTGCGCGCTTGTTGACACGAAAAACGGCTTTTCCTGCCCGCCACCCTCTCGGTGAGGTCGTGCCCCACCGGTCAAGAAGGAAGTGAATTATACTGCCGCGAGTGAAAACCGTTGCAAATTGCCAGATTTTCAGATACACGCGGAGAAGCTGGAGGGAATTGCATCCACCGCGTAGCAGCTGCATAGAGAAAGTAGCGTTTGCAGCAGCATCATTAACAGCAGTGCCGGTGTGTTTGTGTCTGTGTTGAGTGTTTTCCT                               ]




>consensus_3763#1
GGCTTGGACACATCGGAACCGTACCGAAGGCGAATGTCCGTGAAACTCCACTTCAATTAA
CGCATTTCGGAATTCGGCTGGCCCATTGCTGATGCTGCTTTGCAAAGTGTGTGTGTGAGT
GTGTAATATGATGAAAGTTCCTTAAAAACCGCACACAAAGCACAGAGAGCGGGTCATTCG
AGTCTCGATCACAGGGGTGCATCAAACCGAACCAAACCAGCTGCGAATGCACCAGCGTTA
AGGGAACTGCACATTCAAACTGCACACTACGGGGTCAGAGTAAAGTAAAACAAGCGGCCT
CGCTAGCAATAACGTATATTACACATGCAACAGCGCACGCGAAAAAGCGAAAGCTTCTGG
TGTGCAGGCCATTGCGCGCTTGTTGACACGAAAAACGGCTTTTCCTGCCCGCCACCCTCT
CGGTGAGGTCGTGCCCCACCGGTCAAGAAGGAAGTGAATTATACTGCCGCGAGTGAAAAC
CGTTGCAAATTGCCAGATTTTCAGATACACGCGGAGAAGCTGGAGGGAATTGCATCCACC
GCGTAGCAGCTGCATAGAGAAAGTAGCGTTTGCAGCAGCATCATTAACAGCAGTGCCGGT
GTGTTTGTGTCTGTGTTGAGTGTTTTCCTTGTTTCCGTGGCCTACTAGCGGGCGGGTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3763#0      ------------------CCGCCC---ACGCGTCCGTTC-CATATTGCTAACGCGAGCAG 38
consensus_3763#1      GGCTTGGACACATCGGAACCGTACCGAAGGCGAATGTCCGTGAAACTCCACTTCAATTAA 60
                                        ***  *   * ***   ** *    *   * *   * *  * 

consensus_3763#0      CACATTGACGAATTCGGCTGGCCCATTGCTGATGCTGCTT--------GTGTGTGTGAGT 90
consensus_3763#1      CGCATTTCGGAATTCGGCTGGCCCATTGCTGATGCTGCTTTGCAAAGTGTGTGTGTGAGT 120
                      * ****   *******************************        ************

consensus_3763#0      GTGTAATATGATGAAAGTTCCTTAAAAACCGCACACAAAGCACAGAGAGCGGGTCATTCG 150
consensus_3763#1      GTGTAATATGATGAAAGTTCCTTAAAAACCGCACACAAAGCACAGAGAGCGGGTCATTCG 180
                      ************************************************************

consensus_3763#0      AGTCTCGATCACAGGGGTGCATCAAACCGAACCAAACTAGCTGCGAATGCACCAGCGTTA 210
consensus_3763#1      AGTCTCGATCACAGGGGTGCATCAAACCGAACCAAACCAGCTGCGAATGCACCAGCGTTA 240
                      ************************************* **********************

consensus_3763#0      AGGAAACTGCACATTCAAACTGCACACTGCGGGGTCAGAGTAAAGTAAAACAAGCGGCCT 270
consensus_3763#1      AGGGAACTGCACATTCAAACTGCACACTACGGGGTCAGAGTAAAGTAAAACAAGCGGCCT 300
                      *** ************************ *******************************

consensus_3763#0      CGCTAGCAACAGCGTATATTACACATGCAACAGCGCACGCGAAAAAGCGAAAGCTTCTGG 330
consensus_3763#1      CGCTAGCAATAACGTATATTACACATGCAACAGCGCACGCGAAAAAGCGAAAGCTTCTGG 360
                      ********* * ************************************************

consensus_3763#0      TGTGCAGGCCATTGCGCGCTTGTTGACACGAAAAACTGCTTTTCCTGCCCGCCACCCTCT 390
consensus_3763#1      TGTGCAGGCCATTGCGCGCTTGTTGACACGAAAAACGGCTTTTCCTGCCCGCCACCCTCT 420
                      ************************************ ***********************

consensus_3763#0      CGGTGAGGTCGTGCCCCACCGGTCAAGAAGGAAGTGAATTATACTGCCGCGAGTGAAAAC 450
consensus_3763#1      CGGTGAGGTCGTGCCCCACCGGTCAAGAAGGAAGTGAATTATACTGCCGCGAGTGAAAAC 480
                      ************************************************************

consensus_3763#0      CGTTGCAAATTGCCAGATTTTCAGATACACGCGGAGAAGCTGGAGGGAATTGCATCCACC 510
consensus_3763#1      CGTTGCAAATTGCCAGATTTTCAGATACACGCGGAGAAGCTGGAGGGAATTGCATCCACC 540
                      ************************************************************

consensus_3763#0      GCGTAGCAGCTGCATAGAGAAAGTAGCGTTTGCAGCAGCATCATTAACAGCAGTGCCGGT 570
consensus_3763#1      GCGTAGCAGCTGCATAGAGAAAGTAGCGTTTGCAGCAGCATCATTAACAGCAGTGCCGGT 600
                      ************************************************************

consensus_3763#0      GTGTTTGTGTCTGTGTGTTGAGTGTTTTCCTTGTTTCCGTGGCCTACTAGCGGGCGGGTA 630
consensus_3763#1      GTGTTTGTGTCTGTGT--TGAGTGTTTTCCTTGTTTCCGTGGCCTACTAGCGGGCGGGTA 658
                      ****************  ******************************************

consensus_3763#0      CATTGGGGTTGCAAAAGAACAAAAGAAAACGTTTAATGTCATCCCGCGTAGGGTTTGC 688
consensus_3763#1      AA-------------------------------------------------------- 660
                       *