These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [AAGAATNGCCCGAGGATTGGTACCGCTCGCAAAAGCGTGAAAGATCAGCGCAATATAGACGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAAACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCCTTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTGCTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGGCCGTTCTATGAGATAAGCGGGATAGAACAGCGGAACCGACCGAAAAGCCACCGAAGTCTGGATTCTTTTTCGTACACGACACGTTCTACAATGATTTCCGTGATGATGCAAATCATGACTACTCAGGGGTGATCCGGAAGTGGGCCGATCGACAATCTTTGATCGGAGAGCTAAAGACGGCACGAATGGAAGATACACGCTTTGGCAGATTTGAAATTTCGCTTGGGATATCCACAGATGTATCAGCACCAAGGAAATTGCGAGCATCTGTTCGTGATAAGCGATTGTCGATTGTTGGCGGCGACAGACATTCTGACGCGATCCCGATATCCGTGGCTGAACTCGTACGGATTTTCTCGAGATGTCCCTTGCAACATCTGTGGCCACTGTCAGGCGCAATATATTGTACAGAACAGCACTCGACACATCTTCGATCCTGCCTACATTTGTGAAA] [+] EMBL AL693560 [AAGAATNGCCCGAGGATTGGTACCGCTCGCAAAAGCGTGAAAGATCAGCGCAATATAGACGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAAACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCCTTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTGCTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGGCCGTTCTATGAGATAAGCGGGATAGAACAGCGGAACCGACCGAAAAGCCACCGAAGTCTGGATTCTTTTTCGTACACGACACGTTCTACAATGATTTCCGTGATGATGCAAATCATGACTACTCAGGGGTGATCCGGAAGTGGGCCGATCGACAATCTTTGATCGGAGAGCTAAAGACGGCACGAATGGAAGATACACGCTTTGGCAGATTTGAAATTTCGCTTGGGATATCCACAGATGTATCAGCACCAAGGAAATTGCGAGCATCTGTTCGTGATAAGCGATTGTCGATTGTTGGCGGCGACAGACATTCTGACGCGATCCCGATATCCGTGGCTGAACTCGTACGGATTTTCTCGAGATGTCCCTTGCAACATCTGTGGCCACTGTCAGGCGCAATATATTGTACAGAACAGCACTCGACACATCTTCGATCCTGCCTACATTTGTGAAA] consensusID : consensus_3767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence [AATCGCCCCGAGGNTATATATGGAAGCGATGGGTCTGGACGGCATATTGCAGAGTTCGATAAGCTGCTGGAATCGGTCGACGTGGGCCAACTGTCCAGCTCGAAAGATGTACCCGTGAGAACGTTTCTCCCGCACAAGGTATGCTCGAGGCCGAAACCTGCGGAAACGCCGGCTAAAGCCGCCCGCTTCAATTGTGTGCAAAGGGTAACCGCTCGCAAAAGCGTGAAAGATTAGCGCAATATAGATGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAAACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCCTTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTGCTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGGCCGTTCTATGAGATAAGCGGGGATAGAACAGCGGAACCGACCGAGAAGCCACCGAAATCGGGATTCTTTTTCGTCCACGACACGTTCTACAATGATTTCCGGGATGATGCAAATCATGACTACTCGGGGGTGATCCGGAAGTGGGCCGATCGACAATC] [+] EMBL AL933425 [AATCGCCCCGAGGNTATATATGGAAGCGATGGGTCTGGACGGCATATTGCAGAGTTCGATAAGCTGCTGGAATCGGTCGACGTGGGCCAACTGTCCAGCTCGAAAGATGTACCCGTGAGAACGTTTCTCCCGCACAAGGTATGCTCGAGGCCGAAACCTGCGGAAACGCCGGCTAAAGCCGCCCGCTTCAATTGTGTGCAAAGGGTAACCGCTCGCAAAAGCGTGAAAGATTAGCGCAATATAGATGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAAACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCCTTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTGCTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGGCCGTTCTATGAGATAAGCGGGGATAGAACAGCGGAA ] [+] EMBL BX624999 [ GCAGAGTTCGATAAGCTGCTGGAATCGGTCGACGTGGGCCAACTGTCCAGCTCGAAAGATGTACCCGTGAGAACGTTTCTCCCGCACAAGGTATGCTCGAGGCCGAAACCTGCGGAAACGCCGGCTAAAGCCGCCCGCTTCAATTGTGTGCAAAGGGTAACCGCTCGCAAAAGCGTGAAAGATCAGCGCAATATAGATGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAAACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCCTTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTGCTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGGCCGTTCTATGAGATAAGCGGGGATAGAACAGCGGAACCGACCGAGAAGCCACCGAAATCGGGATTCTTTTTCGTCCACGACACGTTCTACAATGATTTCCGGGATGATGCAAATCATGACTACTCGGGGGTGATCCGGAAGTGGGCCGATCGACAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3767#0 ------------------------------------------------------------ consensus_3767#1 AATCGCCCCGAGGNTATATATGGAAGCGATGGGTCTGGACGGCATATTGCAGAGTTCGAT 60 consensus_3767#0 ------------------------------------------------------------ consensus_3767#1 AAGCTGCTGGAATCGGTCGACGTGGGCCAACTGTCCAGCTCGAAAGATGTACCCGTGAGA 120 consensus_3767#0 ------------------------------------------------------------ consensus_3767#1 ACGTTTCTCCCGCACAAGGTATGCTCGAGGCCGAAACCTGCGGAAACGCCGGCTAAAGCC 180 consensus_3767#0 ------AAGAATNGCCCGAGGATTGGTACCGCTCGCAAAAGCGTGAAAGATCAGCGCAAT 54 consensus_3767#1 GCCCGCTTCAATTGTGTGCAAAGGGTAACCGCTCGCAAAAGCGTGAAAGATTAGCGCAAT 240 *** * * * * ************************ ******** consensus_3767#0 ATAGACGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAA 114 consensus_3767#1 ATAGATGTGAAGCTGCGATACAACCGGCACAAATACATGGAGCGAAAGCAGGACTTGGAA 300 ***** ****************************************************** consensus_3767#0 ACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCC 174 consensus_3767#1 ACGCGCAAGGATTTGACACCGTTCCGCGAAATGGTGCTGGTTGTACGGTTCTACGAGCCC 360 ************************************************************ consensus_3767#0 TTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTG 234 consensus_3767#1 TTCAAATACAAAGCAGGACGACGATTGGGCCACCCAAAGTTTAGTCAAGAGTATTACGTG 420 ************************************************************ consensus_3767#0 CTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGG 294 consensus_3767#1 CTTAGTTCACAGTACTTGACAGAACTGAAGGACAAAATATTCTGCCACTGCGATGCGGGG 480 ************************************************************ consensus_3767#0 CCGTTCTATGAGATAAGCGGG-ATAGAACAGCGGAACCGACCGAAAAGCCACCGAAGTCT 353 consensus_3767#1 CCGTTCTATGAGATAAGCGGGGATAGAACAGCGGAACCGACCGAGAAGCCACCGAAATCG 540 ********************* ********************** *********** ** consensus_3767#0 GGATTCTTTTTCGTACACGACACGTTCTACAATGATTTCCGTGATGATGCAAATCATGAC 413 consensus_3767#1 GGATTCTTTTTCGTCCACGACACGTTCTACAATGATTTCCGGGATGATGCAAATCATGAC 600 ************** ************************** ****************** consensus_3767#0 TACTCAGGGGTGATCCGGAAGTGGGCCGATCGACAATCTTTGATCGGAGAGCTAAAGACG 473 consensus_3767#1 TACTCGGGGGTGATCCGGAAGTGGGCCGATCGACAATC---------------------- 638 ***** ******************************** consensus_3767#0 GCACGAATGGAAGATACACGCTTTGGCAGATTTGAAATTTCGCTTGGGATATCCACAGAT 533 consensus_3767#1 ------------------------------------------------------------ consensus_3767#0 GTATCAGCACCAAGGAAATTGCGAGCATCTGTTCGTGATAAGCGATTGTCGATTGTTGGC 593 consensus_3767#1 ------------------------------------------------------------ consensus_3767#0 GGCGACAGACATTCTGACGCGATCCCGATATCCGTGGCTGAACTCGTACGGATTTTCTCG 653 consensus_3767#1 ------------------------------------------------------------ consensus_3767#0 AGATGTCCCTTGCAACATCTGTGGCCACTGTCAGGCGCAATATATTGTACAGAACAGCAC 713 consensus_3767#1 ------------------------------------------------------------ consensus_3767#0 TCGACACATCTTCGATCCTGCCTACATTTGTGAAA 748 consensus_3767#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||