cluster # 3770

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Anopheles gambiae
cluster # 3770 cluster # 3770 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3770#0 length = 682 sequences # 1

consensus_3770#1 length = 609 sequences # 1
consensus_3770#2 length = 486 sequences # 1

consensusID : consensus_3770#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence

                              [CCGCCCACGCGTCCGGCCAAGATCTGGACACGATAAACCTGTAAATCCAAGGTGGTATCCCACCTTCGTCGAAACCAAAAATCACAACGAATAATCCACTTGACTGCAACGAGTTAACAACAAAACCAGTGTCCACAGGAGAGGTGTGTTAAGTGTCCCATGTTTTGCTTTTTATGTTGTTTTTTTTTTAATACTCCGATTTCCGTGTTGGTTTGAAAATTGGAAAGAATTATTTTGCCTCCACCGTGTGAGCTACAAATTTTAAACTCAATACACCAACATTCTCTGTACCAATCGATGCGAACATAGTTAAGAAACGGACCGCAAATTAAGACGCTAACACACACGCTGAGGAGGAAAGGTACTTAAGCGAATGTTGATATCTGCCAAACGTAATCCGCAATCCGTGGCACTGGCCGGATGTTAAAACAGCAGCACAACCAACCACCCCCCTCCCTCCCTCCCCCCTCCTGCCTGTACCAAATAACCGTATAAAACCCCGCGAGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGACAAATAACAATAATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCTAGAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGACCACGGCTTTAGGGGAGAGTAAGATAA]

[+] EMBL BM606267             [CCGCCCACGCGTCCGGCCAAGATCTGGACACGATAAACCTGTAAATCCAAGGTGGTATCCCACCTTCGTCGAAACCAAAAATCACAACGAATAATCCACTTGACTGCAACGAGTTAACAACAAAACCAGTGTCCACAGGAGAGGTGTGTTAAGTGTCCCATGTTTTGCTTTTTATGTTGTTTTTTTTTTAATACTCCGATTTCCGTGTTGGTTTGAAAATTGGAAAGAATTATTTTGCCTCCACCGTGTGAGCTACAAATTTTAAACTCAATACACCAACATTCTCTGTACCAATCGATGCGAACATAGTTAAGAAACGGACCGCAAATTAAGACGCTAACACACACGCTGAGGAGGAAAGGTACTTAAGCGAATGTTGATATCTGCCAAACGTAATCCGCAATCCGTGGCACTGGCCGGATGTTAAAACAGCAGCACAACCAACCACCCCCCTCCCTCCCTCCCCCCTCCTGCCTGTACCAAATAACCGTATAAAACCCCGCGAGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGACAAATAACAATAATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCTAGAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGACCACGGCTTTAGGGGAGAGTAAGATAA]




>consensus_3770#0
CCGCCCACGCGTCCGGCCAAGATCTGGACACGATAAACCTGTAAATCCAAGGTGGTATCC
CACCTTCGTCGAAACCAAAAATCACAACGAATAATCCACTTGACTGCAACGAGTTAACAA
CAAAACCAGTGTCCACAGGAGAGGTGTGTTAAGTGTCCCATGTTTTGCTTTTTATGTTGT
TTTTTTTTTAATACTCCGATTTCCGTGTTGGTTTGAAAATTGGAAAGAATTATTTTGCCT
CCACCGTGTGAGCTACAAATTTTAAACTCAATACACCAACATTCTCTGTACCAATCGATG
CGAACATAGTTAAGAAACGGACCGCAAATTAAGACGCTAACACACACGCTGAGGAGGAAA
GGTACTTAAGCGAATGTTGATATCTGCCAAACGTAATCCGCAATCCGTGGCACTGGCCGG
ATGTTAAAACAGCAGCACAACCAACCACCCCCCTCCCTCCCTCCCCCCTCCTGCCTGTAC
CAAATAACCGTATAAAACCCCGCGAGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGACA
AATAACAATAATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCTAGAGTG
TGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGACCACG
GCTTTAGGGGAGAGTAAGATAA

consensusID : consensus_3770#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [CCGGCTGGCATCACGCTTCTACTTTGTCGATGTGTTCCCCAGCTTACCAGATAAGATTCGTGTACAGCAACGGCTGGCGCTACTGCGTTCCCGGCAGAGCAGTGACGTCTTGAGGACACCGTCCGCCCGCAAGGCACGCCGCTCGTTACGCTCCGGCTATGCTTTCGCCCATCAGGAAGGATTTGGCCGGCTTATTACGTCCGGTAAAATTATGCGCAAACTGCCCCAGGACTTTGCCTTCCCGTTGGGGCTGGGCAGCAAGAAGCAACAGTCGACGGAATCAACCAAAAACAACAATAACAACAACAATAGCAGCAATAACGCTAATAACGCCTCGAATGTGGTCAATGGTGCTGGGGCCGTTGGGACACGAACCGGTACGAACACTGCGACCACAACGAGCCTGTCGGCGATGGCAGCAGTCACCACCTTGACCGTCAATGGTAATCAGCAGCAGCAGCAGCAGCTGGTTAACCTGCCCGGCAGCTCGAACGGCGGTGATCAGCACAGTCCGCGGGCACCGTGCCAAGATCTGGACACGATAAACCTGTAAATCCGAGGTGATATCCCACCTTCGTCGAAACCAAAAATCACAACGAATAATCCACT]

[+] EMBL BM616041             [CCGGCTGGCATCACGCTTCTACTTTGTCGATGTGTTCCCCAGCTTACCAGATAAGATTCGTGTACAGCAACGGCTGGCGCTACTGCGTTCCCGGCAGAGCAGTGACGTCTTGAGGACACCGTCCGCCCGCAAGGCACGCCGCTCGTTACGCTCCGGCTATGCTTTCGCCCATCAGGAAGGATTTGGCCGGCTTATTACGTCCGGTAAAATTATGCGCAAACTGCCCCAGGACTTTGCCTTCCCGTTGGGGCTGGGCAGCAAGAAGCAACAGTCGACGGAATCAACCAAAAACAACAATAACAACAACAATAGCAGCAATAACGCTAATAACGCCTCGAATGTGGTCAATGGTGCTGGGGCCGTTGGGACACGAACCGGTACGAACACTGCGACCACAACGAGCCTGTCGGCGATGGCAGCAGTCACCACCTTGACCGTCAATGGTAATCAGCAGCAGCAGCAGCAGCTGGTTAACCTGCCCGGCAGCTCGAACGGCGGTGATCAGCACAGTCCGCGGGCACCGTGCCAAGATCTGGACACGATAAACCTGTAAATCCGAGGTGATATCCCACCTTCGTCGAAACCAAAAATCACAACGAATAATCCACT]




>consensus_3770#1
CCGGCTGGCATCACGCTTCTACTTTGTCGATGTGTTCCCCAGCTTACCAGATAAGATTCG
TGTACAGCAACGGCTGGCGCTACTGCGTTCCCGGCAGAGCAGTGACGTCTTGAGGACACC
GTCCGCCCGCAAGGCACGCCGCTCGTTACGCTCCGGCTATGCTTTCGCCCATCAGGAAGG
ATTTGGCCGGCTTATTACGTCCGGTAAAATTATGCGCAAACTGCCCCAGGACTTTGCCTT
CCCGTTGGGGCTGGGCAGCAAGAAGCAACAGTCGACGGAATCAACCAAAAACAACAATAA
CAACAACAATAGCAGCAATAACGCTAATAACGCCTCGAATGTGGTCAATGGTGCTGGGGC
CGTTGGGACACGAACCGGTACGAACACTGCGACCACAACGAGCCTGTCGGCGATGGCAGC
AGTCACCACCTTGACCGTCAATGGTAATCAGCAGCAGCAGCAGCAGCTGGTTAACCTGCC
CGGCAGCTCGAACGGCGGTGATCAGCACAGTCCGCGGGCACCGTGCCAAGATCTGGACAC
GATAAACCTGTAAATCCGAGGTGATATCCCACCTTCGTCGAAACCAAAAATCACAACGAA
TAATCCACT

consensusID : consensus_3770#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [CCGCCCACGCGTCCGGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGACAAATAACAATAATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCTAGAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGACCACGGCTTTAGGGGAGAGTAAGATAAAGACGGGAAAAGACGGATCGCCAAGCGATGCTCATACAAAAAAAAACGCCTCCATCATCATCCCGTTTTTGAGTTTCCATCATTCACACGCCTCATCTCGAATGTTTCGAATCTCGATTTTCTTTTTTTTTTACTAAGATCATTCATATTTAGACAAACTACGAGCGCAACTAACAATTTTTTGGGGCGCGAAACAGGCAGAACGAAGGAAAGTGAATAACATTTAGCATTATTACACATTATGAACTTATTGTGATTGTCCTGTGACTACATATTTGATATATTACGAGAGCA]

[+] EMBL BM634015             [CCGCCCACGCGTCCGGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGACAAATAACAATAATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCTAGAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGACCACGGCTTTAGGGGAGAGTAAGATAAAGACGGGAAAAGACGGATCGCCAAGCGATGCTCATACAAAAAAAAACGCCTCCATCATCATCCCGTTTTTGAGTTTCCATCATTCACACGCCTCATCTCGAATGTTTCGAATCTCGATTTTCTTTTTTTTTTACTAAGATCATTCATATTTAGACAAACTACGAGCGCAACTAACAATTTTTTGGGGCGCGAAACAGGCAGAACGAAGGAAAGTGAATAACATTTAGCATTATTACACATTATGAACTTATTGTGATTGTCCTGTGACTACATATTTGATATATTACGAGAGCA]




>consensus_3770#2
CCGCCCACGCGTCCGGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGACAAATAACAATA
ATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCTAGAGTGTGGGTGTTTA
AGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGACCACGGCTTTAGGGG
AGAGTAAGATAAAGACGGGAAAAGACGGATCGCCAAGCGATGCTCATACAAAAAAAAACG
CCTCCATCATCATCCCGTTTTTGAGTTTCCATCATTCACACGCCTCATCTCGAATGTTTC
GAATCTCGATTTTCTTTTTTTTTTACTAAGATCATTCATATTTAGACAAACTACGAGCGC
AACTAACAATTTTTTGGGGCGCGAAACAGGCAGAACGAAGGAAAGTGAATAACATTTAGC
ATTATTACACATTATGAACTTATTGTGATTGTCCTGTGACTACATATTTGATATATTACG
AGAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3770#0      CCGCCCACGCGTCCGGCCAAGATCTGGACACGATAAACCTGTAAATCCAAGGTGGTATCC 60
consensus_3770#2      ------------------------------------------------------------
consensus_3770#1      -----------------------------------------------CCGGCTGGCATCA 13
                                                                                  

consensus_3770#0      CACCTTCGTCGAAACCAAAAATCACAACGAATAATCCACTTGACTGCAACGAGTTAACAA 120
consensus_3770#2      ------------------------------------------------------------
consensus_3770#1      CGCTTCTACTTTGTCGATGTGTTCCCCAGCTTACCAGATAAGATTCGTGTACAGCAACGG 73
                                                                                  

consensus_3770#0      CAAA-ACCAGTGTCCACAGGAGAGGTGTGTTAAGTGTCCCATGTTTTGCTT-TTTATGTT 178
consensus_3770#2      ------------------------------------------------------------
consensus_3770#1      CTGGCGCTACTGCGTTCCCGGCAGAGCAGTGACGTCTTGAGGACACCGTCCGCCCGCAAG 133
                                                                                  

consensus_3770#0      GTTTTTTTTTTAATACTC-CGATTTCCGTGTTGGTTTGAAAATTGGAAAGAATTATTTTG 237
consensus_3770#2      ------------CCGCCCACGCGTCCGGTCTCTGCAAGGAAGGGAAAAGAGGCAAACTGA 48
consensus_3770#1      GCACGCCGCTCGTTACGCTCCGGCTATGCTTTCGCCCATCA---GGAAGGATTTGGCCGG 190
                                     * * *       *  *  *      *     **            

consensus_3770#0      CCTCCACCGTGTGAGCTACAAATTTTAAACTCAATACACCAACATTCTCTGTACCAATCG 297
consensus_3770#2      CAAATAACAATAATAACACAAGTATT--TCATAGGAGAACAA-GTCGAGCAAACCGCCTA 105
consensus_3770#1      CTTATTACGTCCGGTA---AAATTATGCGCAAACTGCCCCAGGACTTTGCCTTCCCGTTG 247
                      *      *           ** *  *   *  *      **            **     

consensus_3770#0      ATGCGAACATAGTTAAGAAACGGACCGCAAATTAAGACGCTAACACACACGCTGAGGAGG 357
consensus_3770#2      GAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAA-GCATAGTATTGACACG 164
consensus_3770#1      GGGC-TGGGCAGCAAGAAGCAACAGTCGACGGAATCAACCAAAAACA-ACAATAACAACA 305
                        *           *             *    *     * **  ** *   *    *  

consensus_3770#0      AAAGGTACTTAAGCGAATGTTGATATCTGCCAAACGTAATCCGCAATCCGTGGCACTGGC 417
consensus_3770#2      ACCACGGCTTTAGGGGAGAGTAAGATAAAGACGGGAAAAGACGGATCGCCAAGCGATGCT 224
consensus_3770#1      ACAATAGC-------AGCAATAACGCTAATAACGCCTCGAATGTGGTCAATGGTGCTGG- 357
                      *      *            * *                   *         *   **  

consensus_3770#0      CGGATGTTAAAACAGCAGCACAACCAACCACCCCCCTCCCTCCCTCCCCCCTCCTGCCTG 477
consensus_3770#2      CATACAA-AAAAAAACGCCTCCATCA-TCATCCCGTTTTTGAGTTTCCATCATTCACACG 282
consensus_3770#1      -GGCCGTTGGGACACGAACCGGTACGAACACTGCGACCACAACGAGCCTGTCGGCGATGG 416
                                 * *    *     *   **   *            **           *

consensus_3770#0      TACCAAAT-AACCGTATAAAACCCCGCGAGTCTCTGCAAGGAAGGGAAAAGAGGCAAACT 536
consensus_3770#2      CCTCATCTCGAATGTTTCGAATCTCGATTTTCTTTTTTTTTTACTAAGATCATTCATATT 342
consensus_3770#1      CAGCAGTC--ACCACCTTGACCGTCAATGGTAATCA----GCAGCAGCAGCAGC--AGCT 468
                         **     *     *  *    *     *           *     *  *       *

consensus_3770#0      GACAAATAACAATAATAACACAAGTATTTCATAGGAGAACAAGTCGAGCAAACCGCCT-A 595
consensus_3770#2      TAGACAAACTACGAGCGCAACTAACAATTTTTTGGGGCGCGAAACAGGCAGAACGAAGGA 402
consensus_3770#1      GGTTAACCTGCCCGGCAGCTCGAACGGCGGTGATCAGCACAGTCCGCGGGCACCGTGCCA 528
                           *              * *             *  *    *  *   * **    *

consensus_3770#0      GAGTGTGGGTGTTTAAGCACAGCTGTTTACGATAAACTTCTAAGCATAGTATTGACACGA 655
consensus_3770#2      AAGTGAATAACATTTAGCATTATTACACATTATGAACTTATTGTGATTGTCCTG---TGA 459
consensus_3770#1      AGATCTGGACACGATAAACCTGTAAATCCGAGGTGATATCCCACCTTCGTCGAA-----A 583
                         *           *                   *  *       * **         *

consensus_3770#0      CCACGGCTT-TAGGGGAGAGTAAGATAA 682
consensus_3770#2      CTACATATT-TGATATATTACGAGAGCA 486
consensus_3770#1      CCAAAAATCACAACGAATAATCCACT-- 609
                      * *    *        *