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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3774#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1122 fasta sequence
[CCGCTTCGTAGCGGTACAGAGTGTTAAGAGCAAAAGCAAACGGAAATGCAAGTGTAAGGTGTGTGTGCGTGCAGTGTGAGTGAGGTGCTCATCTCTCCTCTGTGCTCTGTGCTGCGTTGTGTTGCAAGCTGCAGTGCTTCGAATGGTTGGTGCAGTGGAATAAGCATAGCGAATAAGCAAAGTGCATCACACAGATAAGAAGCAAACGAGTGTGTGTGTGTTTGTCAGTGTGCGTGTATTTTTCCCTGTATGTGTGTCTGGTGGGAGACGTAAAAGGAGCCGACAAGAGCCGAAGGGGTGGTGCTGGTGGAACGTACACCCCGAAAACAGGATTTCCCTCGAGTCGCTGTGTCCTCGAGCAACGGCCCTTGCGTTAATCAAAGTCCGTAGCCGCGCAGCAGCATAAGGCGCAAGGCGAAAAACCCCCGTCACGAAAGAAAAGCGCAAGAAGCGGTTCAGGGCTCCCTCTCATCGATCACCGGTTCGGTTCGGTTGGATTTGGTGCGACAAACGAAGGCAACAAGCGTTGCATAACCTCGACAAAGTGGAAAACACACCTCGATGAAATCAACATGGAGAAACACTCGATAGTTAGCACGATACTATACGTTTTGACAATAACAACTTTCACACATGGCGCACAGATTCCATCCATGAAGCGCTCGGCAACGATATTCACCAAGGAACCGACCGTGCGGATACAATGCCAATCGGGCTCGATGCTGATCACCATCAAGGATGCACCGGCCAACCTGAACGGCCAGTTCAGCGGGATGGTGTATCCGAAAGGGTTGGCAAAAAATTCGACCTGCCTCACCGAGTACCACGAGCAGGAGGGTCCGCTGCGCTACAAGCTGCCACTGAAGAGCTGCAACACGATGCCGATCGAGACGGAGGACGGTGGCATCGAGTTCTTCAACACGATCGTTCTGCAGCCTCATCTCAAGCTGGTCACTGATCTGGGGCGGGGCTACCACGTACGCTGCCGGTATAAGAGCCGCGAGGCAGCGCTCAAGAATGTTTCCTACCGGCACAAGGCGGCCGATGACAGTCGGCCGCTTGCGCTGACCAGTGCTGAAGGTGCCGGACCCGATCGGCGCGAGCATGGCCGCTCGATGGACA]
[+] EMBL BM647357 [CCGCTTCGTAGCGGTACAGAGTGTTAAGAGCAAAAGCAAACGGAAATGCAAGTGTAAGGTGTGTGTGCGTGCAGTGTGAGTGAGGTGCTCATCTCTCCTCTGTGCTCTGTGCTGCGTTGTGTTGCAAGCTGCAGTGCTTCGAATGGTTGGTGCAGTGGAATAAGCATAGCGAATAAGCAAAGTGCATCACACAGATAAGAAGCAAACGAGTGTGTGTGTGTTTGTCAGTGTGCGTGTATTTTTCCCTGTATGTGTGTCTGGTGGGAGACGTAAAAGGAGCCGACAAGAGCCGAAGGGGTGGTGCTGGTGGAACGTACACCCCGAAAACAGGATTTCCCTCGAGTCGCTGTGTCCTCGAGCAACGGCCCTTGCGTTAATCAAAGTCCGTAGCCGCGCAGCAGCATAAGGCGCAAGGCGAAAAACCCCCGTCACGAAAGAAAAGCGCAAGAAGCGGTTCAGGGCTCCCTCTCATCGATCACCGGTTCGGTTCGGTTGGATTTGGTGCGACAAACGAAGGCAACAAGCGTTGCATAACCTCGACAAAGTGGAAAACACACCTCGATGAAATCAACATGGAGAAACACTCGATAGTTAGCACGATACTATACGTTTTGACAATAACAACTTTCACACATGGCGCACAGATTCCATCCATGAAGCGCTCGGCAACGATATTCACCAAGGAACCGACCGTGCG ]
[+] EMBL BM610306 [ ccgGAAAAGCGCAAGAAGCGGTTCAGGGCTCCCTCTCATCGATCACCGGTTCGGTTCGGTTGGATTTGGTGCGACAAACGAAGGCAACAAGCGTTGCATAACCTCGACAAAGTGGAAAACACACCTCGATGAAATCAACATGGAGAAACACTCGATAGTTAGCACGATACTATACGTTTTGACAATAACAACTTTCACACATGGCGCACAGATTCCATCCATGAAGCGCTCGGCAACGATATTCACCAAGGAACCGACCGTGCGGATACAATGCCAATCGGGCTCGATGCTGATCACCATCAAGGATGCACCGGCCAACCTGAACGGCCAGTTCAGCGGGATGGTGTATCCGAAAGGGTTGGCAAAAAATTCGACCTGCCTCACCGAGTACCACGAGCAGGAGGGTCCGCTGCGCTACAAGCTGCCACTGAAGAGCTGCAACACGATGCCGATCGAGACGGAGGACGGTGGCATCGAGTTCTTCAACACGATCGTTCTGCAGCCTCATCTCAAGCTGGTCACTGATCTGGGGCGGGGCTACCACGTACGCTGCCGGTATAAGAGCCGCGAGGCAGCGCTCAAGAATGTTTCCTACCGGCACAAGGCGGCCGATGACAGTCGGCCGCTTGCGCTGACCAGTGCTGAAGGTGCCGGACCCGATCGGCGCGAGCATGGCCGCTCGATGGACA]
consensusID : consensus_3774#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1036 fasta sequence
[GCCCAGCGTTNAGGTNAGAGTGTTAAGAGCCNCAAGCAAGGAAATGCAAGTGTAAGGTGTGTGTGCGTGCAGTGTGAGTGAGGTGCTCATCTCTCCTCTGTGCTCTGTGCTGTGTTGTGTTGCAAGCTGCAGTGCTTCGAATGGTTGGTGCAGTGGAATAAGCATAGCGAATAAGCCACACAGGTGCCATCCACCACCAGCATAAAGCACAGCCACACACTGCAGNTGTCGTGTTGTTTANCATAGTCCGGTTGTNGCGTAGTAGTATATTCTCCACCTTGTNATTGTTGTTGTCNTTGGTTGNGGCAGCACGTAAAACANGGNCCCACCACAGCAGCCCCGGACAGTGGGGTTGTGGTAGACTAGGGATTGGGCACACAGGTTAACNANCGACACGCCGAAAAAAACCAGTGCATTTTCCCCATACGGAGGTTCCGGCCCGGTAGTTACCCTTACGGAACAACAAACAGTGGCCCCCTTTGTCCGCTTTTCCACTACCNAAACAGGTACCCGGTAAGACACCGGAGGCCAAGAGTNAGGCTCACAAAAGGGCCTAGCCAAAGGGGCCGAACACAACAGACCACCCCACGGAACCCACCGGGAAACACGAAACACAAGGCCGGGCCACAANCGAAAAGGCCGGANNNATANCCAAGGAGGACGTTCCCANCCATTCTTACCAAATTACCGGAAAATCCCAACCCAGGACNTAGTNCAGCGGGTACACCGAGGTACTACANGCNCAATTCTACAGGGGAGTTAAGGACCGGAAACAACAACATCCAGACAAAAAGTTGGCCACAACCNACACAANGCACCGTTATTTGGCCCACTTAACACACCCCTTCCCTAACCCACACAACAGGTTTNGTGAACACANAACTAACAAACCCCCTTTACCAGCAACNTTCGAAACACAACTTACCAACACGCCNACTTTAGGANATGAAAAACCAAACCAAACCTTCCGCAACTACAANGATCTTACACACCAACCCAGAAATTANCCCTTAATTACCCCNGTTCATATCTNTGG]
[+] EMBL AL693678 [GCCCAGCGTTNAGGTNAGAGTGTTAAGAGCCNCAAGCAAGGAAATGCAAGTGTAAGGTGTGTGTGCGTGCAGTGTGAGTGAGGTGCTCATCTCTCCTCTGTGCTCTGTGCTGTGTTGTGTTGCAAGCTGCAGTGCTTCGAATGGTTGGTGCAGTGGAATAAGCATAGCGAATAAGCCACACAGGTGCCATCCACCACCAGCATAAAGCACAGCCACACACTGCAGNTGTCGTGTTGTTTANCATAGTCCGGTTGTNGCGTAGTAGTATATTCTCCACCTTGTNATTGTTGTTGTCNTTGGTTGNGGCAGCACGTAAAACANGGNCCCACCACAGCAGCCCCGGACAGTGGGGTTGTGGTAGACTAGGGATTGGGCACACAGGTTAACNANCGACACGCCGAAAAAAACCAGTGCATTTTCCCCATACGGAGGTTCCGGCCCGGTAGTTACCCTTACGGAACAACAAACAGTGGCCCCCTTTGTCCGCTTTTCCACTACCNAAACAGGTACCCGGTAAGACACCGGAGGCCAAGAGTNAGGCTCACAAAAGGGCCTAGCCAAAGGGGCCGAACACAACAGACCACCCCACGGAACCCACCGGGAAACACGAAACACAAGGCCGGGCCACAANCGAAAAGGCCGGANNNATANCCAAGGAGGACGTTCCCANCCATTCTTACCAAATTACCGGAAAATCCCAACCCAGGACNTAGTNCAGCGGGTACACCGAGGTACTACANGCNCAATTCTACAGGGGAGTTAAGGACCGGAAACAACAACATCCAGACAAAAAGTTGGCCACAACCNACACAANGCACCGTTATTTGGCCCACTTAACACACCCCTTCCCTAACCCACACAACAGGTTTNGTGAACACANAACTAACAAACCCCCTTTACCAGCAACNTTCGAAACACAACTTACCAACACGCCNACTTTAGGANATGAAAAACCAAACCAAACCTTCCGCAACTACAANGATCTTACACACCAACCCAGAAATTANCCCTTAATTACCCCNGTTCATATCTNTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3774#0 CCGCTTCGTAGCGGTACAGAGTGTTAAGAGCAA-AAGCAAACGGAAATGCAAGTGTAAGG 59
consensus_3774#1 GCCCAGCGTTNAGGTN-AGAGTGTTAAGAGCCNCAAGCAA--GGAAATGCAAGTGTAAGG 57
* * *** *** ************** ****** ******************
consensus_3774#0 TGTGTGTGCGTGCAGTGTGAGTGAGGTGCTCATCTCTCCTCTGTGCTCTGTGCTGCGTTG 119
consensus_3774#1 TGTGTGTGCGTGCAGTGTGAGTGAGGTGCTCATCTCTCCTCTGTGCTCTGTGCTGTGTTG 117
******************************************************* ****
consensus_3774#0 TGTTGCAAGCTGCAGTGCTTCGAATGGTTGGTGCAGTGGAATAAGCATAGCGAATAAGCA 179
consensus_3774#1 TGTTGCAAGCTGCAGTGCTTCGAATGGTTGGTGCAGTGGAATAAGCATAGCGAATAAGCC 177
***********************************************************
consensus_3774#0 AAGTGCATCACACAGATAAGAAGCAAACGAGTGTGTGTGTGTTTGTCAGTGTGCGTGTAT 239
consensus_3774#1 ACACAGGTGCCATCCACCACCAGCATA-AAGCACAGCCACACACTGCAGNTGTCGTGTTG 236
* * ** * * **** * ** *** *****
consensus_3774#0 TTTTCCCTGTATGTGTGTCTGGTGGGAGACGTAAAAGGA-GCCGACAAGAGCCGAAGGGG 298
consensus_3774#1 TTTANCATA-------GTCCGGTTGTNG-CGTAGTAGTATATTCTCCACCTTGTNATTGT 288
*** * * *** *** * * **** ** * * * * *
consensus_3774#0 TGGTGCTGGTGGAACGTACACCCCG-AAAACAGGATTTCCCTCGAGTCGCTGTGTCCTCG 357
consensus_3774#1 TGTTGTCNTTGGTTGNGGCAGCACGTAAAACANGGNCCCAC------CACAGCAGCCCCG 342
** ** *** ** * ** ****** * * * * * * ** **
consensus_3774#0 AGCAACGGCCCTTGCGTTAATCAAAGTCCGTAGCCGCGCAGCAGCATAAGGCGCAAGGCG 417
consensus_3774#1 GACAGTGGGGTTGTGGTAGACTAGGGATTG--GGCACACAGGTTAACNANCGACACGCCG 400
** ** * ** * * * * * * * *** * * ** * **
consensus_3774#0 AAAAACCCCCGT-CACGAAAGAAAAGCGCAAGAAGCGGTTCAGGGCTCCCTCTCATCGAT 476
consensus_3774#1 AAAAAAACCAGTGCATTTTCCCCATACGGAGGTTCCGGCCCGGTAGTTACCCTTACGGAA 460
***** ** ** ** * ** * * *** * * * * ** * **
consensus_3774#0 CACCG------GTTCGGTTCGGTTGGATTTGGTGCGACAAACGAAGGCAACAAGCGTTGC 530
consensus_3774#1 CAACAAACAGTGGCCCCCTTTGTCCGCTTTTCCACTACCNAAACAGGTACCCGGTAAGAC 520
** * * * * ** * *** * ** * *** * * * *
consensus_3774#0 ATAACCTCGACAAAGTGGAAAACACACCTCGATGAAATCAACATGGAGAAACACTCGATA 590
consensus_3774#1 ACCGGAGGCCAAGAGTNAGGCTCACAAAAGGGCCTAGCCAAAGGGGCCGAACAC--AACA 578
* * *** **** * * *** ** ***** * *
consensus_3774#0 GTTAGCACGATACTATACGTTTTGACAATAACAACTTTCACACATGGCGCACAGATTCCA 650
consensus_3774#1 G--ACCACCCCACGGAACCCACCGGGAAACACGAA----ACACAAGGC---CGGG--CCA 627
* * *** ** ** * ** ** * ***** *** * * ***
consensus_3774#0 TCCATGAAGCGCTCGGCAACGATATTCACCAAGGAA----CCGACCGTGCGGATACAAT- 705
consensus_3774#1 CAANCGAAAAGGCCGG-ANNNATANCCAAGGAGGACGTTCCCANCCATTCTTACCAAATT 686
*** * *** * *** ** **** ** ** * * * ***
consensus_3774#0 GCCAATCGGGCTCGATGCTGATCACCATCAAG--GATGCACCGGCCAACCTGAACGGCCA 763
consensus_3774#1 ACCGGAAAATCCCAACCCAGGACNTAGTNCAGCGGGTACACCGAGGTAC-TACANGCNCA 745
** * * * * * * * ** * * ***** ** * * * **
consensus_3774#0 GTTCAGCGGGATGGTGTATCCGAAAGGGTTGGCAAAAAATTCGACCTGCCTCACCGAGTA 823
consensus_3774#1 ATTCTACAGGGGAGTT-------AAGGACCGGAAACAACAACATCCAGACAAAAAGTTGG 798
*** * ** ** **** ** ** ** * ** * * * *
consensus_3774#0 CCACGAGCAGGAGGGTCCGCTGCGCTACAAGCTGCCACTGAAGAGCTGCAACACGATGCC 883
consensus_3774#1 CCACAACCNACACAANGCAC--CGTTATTTGGC-CCACTTAACA----CACCCCTTCCCT 851
**** * * * * * ** ** * ***** ** * ** * * *
consensus_3774#0 GATCGAGACGGAGGACGGTGGCATCGAGTTCTTCAACACGATCGTTCTGCAGCCTCATCT 943
consensus_3774#1 AACCCACACAACAGGTTTNGTGAACACANAACTAACAAACCCCCTTTACCAGCAACNTTC 911
* * * ** * * * * * * * * ** **** * *
consensus_3774#0 CAAGCTGGTCACTGATCTGGGGCGGGGCTACCACGTACGCTGCCGGTATAAGAGCCGCGA 1003
consensus_3774#1 GAAACACAACTTACCAACACGCCNACTTTAGGANATGAAAAACCAAACCAAACCTTCCGC 971
** * * * * ** * * ** ** **
consensus_3774#0 GGCAGCGCTCAAGAATGTTTCCTACCGGCACAAGGCGGCCGATGACAGTCGGCCGCTTGC 1063
consensus_3774#1 AACTAC----AANGATCTTACACACCAACCCAGAA-----ATTANCCCTTAATTACCCCN 1022
* * ** ** ** * *** * ** * * * *
consensus_3774#0 GCTGACCAGTGCTGAAGGTGCCGGACCCGATCGGCGCGAGCATGGCCGCTCGATGGACA 1122
consensus_3774#1 GTTCATATCTNTGG--------------------------------------------- 1036
* * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||