These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3780#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1190 fasta sequence [CAAGATCGCCCCNGGTTTTATACGAAATTTGTTTTTGACACAGTGGCATGGAATCTCTCTTGAAAGCCATCTCTTTTTTTTTTTTTTGGGGACAAGAAAAGGANGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCCGCGCTATCAACAGATNAGTTACGTTTTNAANACCAAGTGTGTATTTAGNTGTGTCCATATCAAAGGCAACAACAGAGTCCATGCGNAACAACAGCATCGCTATACCGCAGATCATNATCCANCATCCGCATCAGCAACCGTTGGCCCAAACGTGNATCAATACTCAACANTTTCCTAATTAGGGNACACATACCAATTACTTAATTATAACCAGNCACGTAGGATTAAANCNTNCATTCCGTTACATAGCCCTTCTCGGTTTCCACATTTTGTCNACCACTTTCGTTTAACNCACANTTTGGTGTACACNTTGGGAAACCACNAAATAGATTTACCCCTTNAATCCACCANATCANNACCCNGACTATGCTCACACNAACTAAGTCAACTCGGAGANCCCCGGAGAGANCTAGNCCCGACGTTAAATNTACCCAGGTTGACCCAGTCTNGTAAAATTNCAGCCCCCAGGATTTTCTGGAGCCAGGGGGNTGACACCTATGCCAAGAACTAGAACTTCTTGGGGCTTTCGCAAGGGCGGAGTACAATTTAAATAAACCCCCCGGNATGTCAATNCAAANTGGAGGGNAGCTATTTACCAANATTATTAAAACTTTANAGGGTNAGCAACGGGACGAGCGGNACTATACCGAGCGACACAGANAACNTTAAAAAGTTCGCGGAGTATTNCGGAANCNCCNAATTTANANGGCAAAAATTTATGTCCNNACCCANTTTCACCAAGTNTAANCTTTTNTAACGGTCCTTACCAATGGACGCCACCATTTACCCACTGATAAAGTNGGGCCTTTTACACCATAACCCGACGAAACAACCCCNCCCCATAGGAAAAGAGACNAACAAGCACCAANCNAGTCAACAGCATAACCACATGGGGGTATCCGGNNTGTCANANTCACACACCNCGTGTGGGCTGNAANTTTATGACAGAAAGCCCGGCGACAAANACNCAATCNACCGGAGCCNGGCACTTAAATGCCAGATACACCCCCGATGAGAACCNCTGGCAAAC] [+] EMBL AL693807 [CAAGATCGCCCCNGGTTTTATACGAAATTTGTTTTTGACACAGTGGCATGGAATCTCTCTTGAAAGCCATCTCTTTTTTTTTTTTTTGGGGACAAGAAAAGGANGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCCGCGCTATCAACAGATNAGTTACGTTTTNAANACCAAGTGTGTATTTAGNTGTGTCCATATCAAAGGCAACAACAGAGTCCATGCGNAACAACAGCATCGCTATACCGCAGATCATNATCCANCATCCGCATCAGCAACCGTTGGCCCAAACGTGNATCAATACTCAACANTTTCCTAATTAGGGNACACATACCAATTACTTAATTATAACCAGNCACGTAGGATTAAANCNTNCATTCCGTTACATAGCCCTTCTCGGTTTCCACATTTTGTCNACCACTTTCGTTTAACNCACANTTTGGTGTACACNTTGGGAAACCACNAAATAGATTTACCCCTTNAATCCACCANATCANNACCCNGACTATGCTCACACNAACTAAGTCAACTCGGAGANCCCCGGAGAGANCTAGNCCCGACGTTAAATNTACCCAGGTTGACCCAGTCTNGTAAAATTNCAGCCCCCAGGATTTTCTGGAGCCAGGGGGNTGACACCTATGCCAAGAACTAGAACTTCTTGGGGCTTTCGCAAGGGCGGAGTACAATTTAAATAAACCCCCCGGNATGTCAATNCAAANTGGAGGGNAGCTATTTACCAANATTATTAAAACTTTANAGGGTNAGCAACGGGACGAGCGGNACTATACCGAGCGACACAGANAACNTTAAAAAGTTCGCGGAGTATTNCGGAANCNCCNAATTTANANGGCAAAAATTTATGTCCNNACCCANTTTCACCAAGTNTAANCTTTTNTAACGGTCCTTACCAATGGACGCCACCATTTACCCACTGATAAAGTNGGGCCTTTTACACCATAACCCGACGAAACAACCCCNCCCCATAGGAAAAGAGACNAACAAGCACCAANCNAGTCAACAGCATAACCACATGGGGGTATCCGGNNTGTCANANTCACACACCNCGTGTGGGCTGNAANTTTATGACAGAAAGCCCGGCGACAAANACNCAATCNACCGGAGCCNGGCACTTAAATGCCAGATACACCCCCGATGAGAACCNCTGGCAAAC] consensusID : consensus_3780#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 863 fasta sequence [AGAATTCGCACGAGGGAATTTTGCTCAATCGCTTATTTTTTGGTGATATGACATTTTTGTTTGTTTGTGAGGACCTTCATCAAGAACACATCTTAGATACGAAATTTGTTTTTGACACAGTGGCATGGAATCTCTCTTGAAAGCCATTCTTTTTTTTTTTTTGGGGACAAGAAAAGGAAGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCGCGCTATCAAAGATAGTAGTTTAAACCAGTGTGTATTGTGTGTCATTCAAAGCAAAACAAACAACAAACAACAGCATCCTTACGCACATCATATCCACATCGCATAGAACGTGAAAAGGAACAATACAAATCATTGTTAAAATTTATTACCCTGTAATATGTAGCTTGTAATTAACATGTAAATGTTATGACCAAAATCCCTACCACGCCGCACACACACACCGGCCGGGCGCGTATCGTCATTATCCCGTTGCAGTATCAATATTGTGAAGGATAACCGCAAAGGACTCATTATAGAAGATGCTCGAAATAATCGTTGACCATAGATTTCAATAATATTTGTAGCCCAAAATGTTAAACAACCCAGACAACAACATTTTGTGTTTCACTGATCAAACGATCTATTTCTCTGTTCACCGAACAATCTGTTGGCATACATTTACATTTACCATCAACAAACTCCTATCTACTGCATGTGTTTCAGTGCCAACACTCACACAGTCAGACAGACGGGCACAGTGTACGGCACAACATAAATCCCCTTGCCTGTGTCACATAATCGCGGGGGGCTTCTGTGTTAATGTCTAGAAAGCGAATTGGCCACAGGATGCCGACAGGAAAGGAACTAT] [+] EMBL BX620818 [AGAATTCGCACGAGGGAATTTTGCTCAATCGCTTATTTTTTGGTGATATGACATTTTTGTTTGTTTGTGAGGACCTTCATCAAGAACACATCTTAGATACGAAATTTGTTTTTGACACAGTGGCATGGAATCTCTCTTGAAAGCCATTCTTTTTTTTTTTTTGGGGACAAGAAAAGGAAGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCGCGCTATCAAAGATAGTAGTTTAAACCAGTGTGTATTGTGTGTCATTCAAAGCAAAACAAACAACAAACAACAGCATCCTTACGCACATCATATCCACATCGCATAGAACGTGAAAAGGAACAATACAAATCATTGTTAAAATTTATTACCCTGTAATATGTAGCTTGTAATTAACATGTAAATGTTATGACCAAAATCCCTACCACGCCGCACACACACACCGGCCGGGCGCGTATCGTCATTATCCC ] [+] EMBL BX629120 [ ACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCGCGCTATCAAAGATAGTAGTTTGAACCAGTGTGTATTGTGTGTCATTCAAAGCAAAACAAACAACAAACAACAGCATCCTTACGCACATCATATCCACATCGCATAGAACGTGAAAAGGAACAATACAAATCATTGTTAAAATTTATTACCCTGTAATATGTAGCTTGTAATTAACATGTAAATGTTATGACCAAAATCCCTACCACCCCGCACACACACACCGGCCGAGCGCGTATCGTCATTATCCCGTTGCAGTATCAATATTGTGAAGGATAACCGCAAAGGACTCATTATAGAAGATGCTCGAAATAATCGTTGACCATAGATTTCAATAATATTTGTAGCCCAAAATGTTAAACAACCCAGACAACAACATTTTGTGTTTCACTGATCAAACGATCTATTTCTCTGTTCACCGAACAATCTGTTGGCATACATTTACATTTACCATCAACAAACTCCTATCTACTGCATGTGTTTCAGTGCCAACACTCACACAGTCAGACAGACGGGCACAGTGTACGGCACAACATAAATCCCCTTGCCTGTGTCACATAATCGCGGGGGGCTTCTGTGTTAATGTCTAGAAAGCGAATTGGCCACAGGATGCCGACAGGAAAGGAACTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3780#0 ------------------------------------------------------------ consensus_3780#1 AGAATTCGCACGAGGGAATTTTGCTCAATCGCTTATTTTTTGGTGATATGACATTTTTGT 60 consensus_3780#0 -----------------CAAGATCGCCCCNGGTTTTATACGAAATTTGTTTTTGACACAG 43 consensus_3780#1 TTGTTTGTGAGGACCTTCATCAAGAACACATCTTAGATACGAAATTTGTTTTTGACACAG 120 ** * * * ** ************************ consensus_3780#0 TGGCATGGAATCTCTCTTGAAAGCCATCTCTTTTTTTTTTTTTTGGGGACAAGAAAAGGA 103 consensus_3780#1 TGGCATGGAATCTCTCTTGAAAGCCATTC--TTTTTTTTTTTTTGGGGACAAGAAAAGGA 178 *************************** ***************************** consensus_3780#0 NGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATCCGCG 163 consensus_3780#1 AGAGGTACAGATCAATCTTTAGCTATCAACAGTAAGGAAAGCGAATCTTGTCAATC-GCG 237 ******************************************************* *** consensus_3780#0 CTATCAACAGATNAGTTACGTTTTNAANACCAAGTGTGTATTTAGNTGTGTCCATATCAA 223 consensus_3780#1 CTATCAA-AGATA------GTAGTTTAAACCA-GTGTGTATTGTGTGTCATTCAAAGCAA 289 ******* **** ** * * **** ********* * * ** * *** consensus_3780#0 AGGCAACAACAGAGTCCATGCGNAACAACAGCATCGCTATACCGCAGATCATNATCCANC 283 consensus_3780#1 AACAAACAACA------------AACAACAGCATCCTTA---CGCACATCATA------- 327 * ******* ************ ** **** ***** consensus_3780#0 ATCCGCATCAGCAACCGTTGGCCCAAACGTGNATCAATACTCAACANTTTCCTAATTAGG 343 consensus_3780#1 -TCCACATCG-----CATAGAACGTGAAAAGGAACAATACAAATCATTGTTAAAATTTAT 381 *** **** * * * * * * * ****** * ** * * **** consensus_3780#0 GNACACATACCAATTACTTAATTATAACCAGNCACGT---AGGATTAAANCNTNCATTCC 400 consensus_3780#1 TACCCTGTAATATGTAGCTTGTAATTAACATGTAAATGTTATGACCAAAATCCCTACCAC 441 * ** * ** * * ** * ** * * * ** *** * * consensus_3780#0 GTTACATAGCCCTTCTCGGTTTCCACATTTTGTCNACCACTTTCGTTTAACNCACANTTT 460 consensus_3780#1 GCCGCACACACACACCGGCCGGGCGCGTATCGTCATTA--TCCCGTTGCAGTATCAATAT 499 * ** * * * * * * * * *** * **** * ** * * consensus_3780#0 GGTGTACACNTTGGGAAACCACNAAATAGATTTACCCCTTNAATCCACCANATCANNACC 520 consensus_3780#1 TGTGAA------GGATAACCGCAAA--GGACTCATTATAGAAGATGCTCGAAATAAT-CG 550 *** * ** **** * ** ** * * * * * * * consensus_3780#0 CNGACTAT-GCTCACACNAACTAAGTCAACTCGGAGANCCCCGGAGAGANCTAGNCCCGA 579 consensus_3780#1 TTGACCATAGATTTCAATAATATTTGTAGCCC--AAAATGTTAAACAACCCAGACAACAA 608 *** ** * * ** ** * * * * * * * * * * consensus_3780#0 CGTTAAATNTACCCAGGTTGACCCAGTCTNGTAAAATTNCAGCCCCCAGGATTTTCTGGA 639 consensus_3780#1 CATTTTGTGTTTCACTGATCAAACGATCTATT----TCTCTGTTCACCGAACAATCTGTT 664 * ** * * * * * * * *** * * * * * * * * **** consensus_3780#0 GCCAGGGGGNTGACACCTAT-GCCAA-GAACTAGAACTTCTTGGGGCTTTCGCAAGGGCG 697 consensus_3780#1 GGCATACATTT-ACATTTACCATCAACAAACTCCTATCTACTGCATGTGTTTCAGTGCCA 723 * ** * *** ** *** **** * * ** * * ** * * consensus_3780#0 GAGTACAATTTAAATAAACCCCCCGGNATGTCAATNCAAANTGGAGGGNAGCTATTTACC 757 consensus_3780#1 ACACTCA-CACAGTCAGACAGACGGGCACAGTG-TACGGCACAACATAAATCCCCTTGCC 781 ** * * ** * ** * * * * * ** ** consensus_3780#0 AANATTATTAAAACTTTANAGGGTNAGCAACGGGACGAGCGGNACTATACCGAGCGACAC 817 consensus_3780#1 TGTGTCACATAATCGCGGGGGGCTT-----CTGTGTTAATGTCTAGAAAGCGAATTGGCC 836 * * ** * ** * * * * * * * *** * consensus_3780#0 AGANAACNTTAAAAAGTTCGCGGAGTATTNCGGAANCNCCNAATTTANANGGCAAAAATT 877 consensus_3780#1 ACAGGATGCCGACAGGAAAG-GAACTAT-------------------------------- 863 * * * * * * * * * *** consensus_3780#0 TATGTCCNNACCCANTTTCACCAAGTNTAANCTTTTNTAACGGTCCTTACCAATGGACGC 937 consensus_3780#1 ------------------------------------------------------------ consensus_3780#0 CACCATTTACCCACTGATAAAGTNGGGCCTTTTACACCATAACCCGACGAAACAACCCCN 997 consensus_3780#1 ------------------------------------------------------------ consensus_3780#0 CCCCATAGGAAAAGAGACNAACAAGCACCAANCNAGTCAACAGCATAACCACATGGGGGT 1057 consensus_3780#1 ------------------------------------------------------------ consensus_3780#0 ATCCGGNNTGTCANANTCACACACCNCGTGTGGGCTGNAANTTTATGACAGAAAGCCCGG 1117 consensus_3780#1 ------------------------------------------------------------ consensus_3780#0 CGACAAANACNCAATCNACCGGAGCCNGGCACTTAAATGCCAGATACACCCCCGATGAGA 1177 consensus_3780#1 ------------------------------------------------------------ consensus_3780#0 ACCNCTGGCAAAC 1190 consensus_3780#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||