These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3783#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence [CCGCATCCTAACCCAACCTCAAGAGGGGCAAAGTGAGAGTGACAAGCTAACAAGGGTTCTGCCACCAACCAAACCAAACCCCCCAAAACCCAAGAGCCAGCAATCACACACAGAAAAACGTGTGCAACAAATCAAATCCTTATCGTTCAGCGGCTGCACAGTATCGGCTTTTTGTTGTTTGGTGTCTTCGCTGCCTGCCTGTTCATCCAAGCAGGCCCAGCACGGACGAGCGTTCTATCGGTCCGGTCGATCAGTCTTGAGTGTCCCGGCGTCCCAGTCGGTCCAGTGTCCAGAGTAATCCGAGCACGAGCAC-AAAAGCAACAACGATGGTGAAATCAATCACGGCCAATCCGCAGGGCCAGTTCTCGGTCGAGGACTACGCGGTGTTTACGATCATGCTGGGGATTTCTACCGCGATCGGGGTGTACTTTGGCTTTTTCCAGAAGAAGAAAAACCAAACCACCGAGGAGTATCTGCTCGGCGGGCGGAAGATGAAAACGTTCCCGATCGCGATATCGCTGATCGCAAGCCAACTGTCCGGTGTGTCCATCATGTCGGTTCCGGCGGAAATGTACTCGT-ACGGGGCGCAGTACTGGATCATCGCCCCGACCATGATCCTCATCACGATGATCATCAACTACATCTTTCGTGCCGGTGTTTTACAACAACCACA] [+] EMBL BM605535 [CCGCATCCTAACCCAACCTCAAGAGGGGCAAAGTGAGAGTGACAAGCTAACAAGGGTTCTGCCACCAACCAAACCAAACCCCCCAAAACCCAAGAGCCAGCAATCACACACAGAAAAACGTGTGCAACAAATCAAATCCTTATCGTTCAGCGGCTGCACAGTATCGGCTTTTTGTTGTTTGGTGTCTTCGCTGCCTGCCTGTTCATCCAAGCAGGCCCAGCACGGACGAGCGTTCTATCGGTCCGGTCGATCAGTCTTGAGTGTCCCGGCGTCCCAGTCGGTCCAGTGTCCAGAGTAATCCGAGCACGAGCAC AAAAGCAACAACGATGGTGAAATCAATCACGGCCAATCCGCAGGGCCAGTTCTCGGTCGAGGACTACGCGGTGTTTACGATCATGCTGGGGATTTCTACCGCGATCGGGGTGTACTTTGGCTTTTTCCAGAAGAAGAAAAACCAAACCACCGAGGAGTATCTGCTCGGCGGGCGGAAGATGAAAACGTTCCCGATCGCGATATCGCTGATCGCAAGCCAACTGTCCGGTGTGTCCATCATGTCGGTTCCGGCGGAAATGTACTCGT ACGGGGCGCAGTACTGGATCATCGCCCCGACCATGATCCTCATCACGATGATCATCAACTACATCTTTCGTGCCGGTGTTTTACAACAACCACA] [+] EMBL BM607289 [ ccgACCAAACCCCCCAAAACCCAAGAGCCAGCAATCACACACAAAAAAACGTGTGCAACAAATCAAATCCTTATCGTCCAGCGGCTGCACAGTATCGGCTTTTTGTTGTTTGGTGTCTTCGCTGCCTGCCTGTTCATCCAAGCAGGCCCAGCACGGACGAGCGTTCTATCGGTCCGTTCGATCAGTCTTGAGTGTCCCGGCGTCCCAGTCGGTCCAGTGTCCAGAGTAATCCGAGCACGAGCACAAAAAAAAACAACGATGGTGAAATCAATCACGGCCAATCCGCAGGGCCAGTTCTCGGTCGAGGACTACGCGGTGTTTACGATCATGCTTGGGATTTCTACCGCGATCGGGGTGTACTTTGGCTTTTTCCAGAAGAAGAAAAACCAAACCACCGAGGAGTATCTGCTCGGCGGGCGGAAGATGAAAACGTTCCCGATCGCGATATCGCTGATCGCAAGCCAACTGTCTGGTGTGTCCATCATGTCGGTTCCGGCGGAAATGTACTCGTAACGGGGCGCAGTACTGGATCATCGCCCCGACCATGATCCTCAT ] consensusID : consensus_3783#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 119 fasta sequence [TCAAATCCTTATCTTTCAGCGGCTGCACAGTATCGGCTTTCTGTTGTTTGGTGTCTTCGCTGCCTGCCTGTTCCTCCCAGCTGGCCCCGCTCGGTCGTCGTGCCGGGGCTGTTTTTGTT] [+] EMBL CNS096OV [TCAAATCCTTATCTTTCAGCGGCTGCACAGTATCGGCTTTCTGTTGTTTGGTGTCTTCGCTGCCTGCCTGTTCCTCCCAGCTGGCCCCGCTCGGTCGTCGTGCCGGGGCTGTTTTTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3783#0 CCGCATCCTAACCCAACCTCAAGAGGGGCAAAGTGAGAGTGACAAGCTAACAAGGGTTCT 60 consensus_3783#1 ------------------------------------------------------------ consensus_3783#0 GCCACCAACCAAACCAAACCCCCCAAAACCCAAGAGCCAGCAATCACACACAGAAAAACG 120 consensus_3783#1 ------------------------------------------------------------ consensus_3783#0 TGTGCAACAAATCAAATCCTTATCGTTCAGCGGCTGCACAGTATCGGCTTTTTGTTGTTT 180 consensus_3783#1 -----------TCAAATCCTTATCTTTCAGCGGCTGCACAGTATCGGCTTTCTGTTGTTT 49 ************* ************************** ******** consensus_3783#0 GGTGTCTTCGCTGCCTGCCTGTTCATCCAAGCAGGCCCAGCACGGACGAGCGTTCTATCG 240 consensus_3783#1 GGTGTCTTCGCTGCCTGCCTGTTCCTCCCAGCTGGCCCCGCTCGGTCGT-CGTGCCGGGG 108 ************************ *** *** ***** ** *** ** *** * * consensus_3783#0 GTCCGGTCGATCAGTCTTGAGTGTCCCGGCGTCCCAGTCGGTCCAGTGTCCAGAGTAATC 300 consensus_3783#1 CTGTTTTTGTT------------------------------------------------- 119 * * * * consensus_3783#0 CGAGCACGAGCACAAAAGCAACAACGATGGTGAAATCAATCACGGCCAATCCGCAGGGCC 360 consensus_3783#1 ------------------------------------------------------------ consensus_3783#0 AGTTCTCGGTCGAGGACTACGCGGTGTTTACGATCATGCTGGGGATTTCTACCGCGATCG 420 consensus_3783#1 ------------------------------------------------------------ consensus_3783#0 GGGTGTACTTTGGCTTTTTCCAGAAGAAGAAAAACCAAACCACCGAGGAGTATCTGCTCG 480 consensus_3783#1 ------------------------------------------------------------ consensus_3783#0 GCGGGCGGAAGATGAAAACGTTCCCGATCGCGATATCGCTGATCGCAAGCCAACTGTCCG 540 consensus_3783#1 ------------------------------------------------------------ consensus_3783#0 GTGTGTCCATCATGTCGGTTCCGGCGGAAATGTACTCGTACGGGGCGCAGTACTGGATCA 600 consensus_3783#1 ------------------------------------------------------------ consensus_3783#0 TCGCCCCGACCATGATCCTCATCACGATGATCATCAACTACATCTTTCGTGCCGGTGTTT 660 consensus_3783#1 ------------------------------------------------------------ consensus_3783#0 TACAACAACCACA 673 consensus_3783#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||