These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 983 fasta sequence [CATCCCCCGAGGTTAAAAAGCACACGTGTNTAAGTGTCGTGTGTGTGTATATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTCAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATATGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATANCGACAGGCCACAAGTATATCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTAGTCTAACTGTTGTGTGCGAAGCCTGGTATAGAAGTTTAGTAATTNTNATAAAAGGGTTTCGTTTCCGTNATAACCTTACCGCTGTTGTNGTAGTTGTAGCCCTTTATCGATATAGTAATAGTNNAATTAAAANANAGCATAATTGTTATACTAGTGTATATGNNATANCTGTNGTTACATAGTANTATNGTAGCTAATAGACACTACCGCTAAGNCGTAAGGCCCTATACTACTATANNCTTGTACTNCTAGTAATCCTAGTNNATATATTATNTNCAAGGACTNTATATNNAAATAGGCCAAGAAAACTTACTNTACATAAGACCCTTGGATGNGANAGAANAACGATGANAAAGTNGGAAGTCACCAGAGAAGTACTNTGTCTCGAGTCAGGGCGAGNGGANAGTAGGTAGANCGCAAGGGCGTCGTTACCCCTTGGTTGTACCCCTTGGGTTANAAGAGAACCAAAGGTGGCGCCCGGAAGTATGGAGAACGGGAACNATCAAGACTACTGGCGAACANCCAGCTTGGATTTGTCANCGGCCACACCGANAGTCANAAGCCCAACGACTTGGNANNTTGGTATGTTTAAAGGAAACNGNATAGGTTGGTACAANGTAATGNGGTATTCNNNTCGTGGCGCANNTTGGCANTTTATTGGCACCTTTNNACANATATCGCCATCACGATGTCGGACTTAAGCAGGGNGCGGTTTCANGTTAANNTGGCGTGTGTNGATTAAGTGTGC] [+] EMBL AL693967 [CATCCCCCGAGGTTAAAAAGCACACGTGTNTAAGTGTCGTGTGTGTGTATATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTCAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATATGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATANCGACAGGCCACAAGTATATCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTAGTCTAACTGTTGTGTGCGAAGCCTGGTATAGAAGTTTAGTAATTNTNATAAAAGGGTTTCGTTTCCGTNATAACCTTACCGCTGTTGTNGTAGTTGTAGCCCTTTATCGATATAGTAATAGTNNAATTAAAANANAGCATAATTGTTATACTAGTGTATATGNNATANCTGTNGTTACATAGTANTATNGTAGCTAATAGACACTACCGCTAAGNCGTAAGGCCCTATACTACTATANNCTTGTACTNCTAGTAATCCTAGTNNATATATTATNTNCAAGGACTNTATATNNAAATAGGCCAAGAAAACTTACTNTACATAAGACCCTTGGATGNGANAGAANAACGATGANAAAGTNGGAAGTCACCAGAGAAGTACTNTGTCTCGAGTCAGGGCGAGNGGANAGTAGGTAGANCGCAAGGGCGTCGTTACCCCTTGGTTGTACCCCTTGGGTTANAAGAGAACCAAAGGTGGCGCCCGGAAGTATGGAGAACGGGAACNATCAAGACTACTGGCGAACANCCAGCTTGGATTTGTCANCGGCCACACCGANAGTCANAAGCCCAACGACTTGGNANNTTGGTATGTTTAAAGGAAACNGNATAGGTTGGTACAANGTAATGNGGTATTCNNNTCGTGGCGCANNTTGGCANTTTATTGGCACCTTTNNACANATATCGCCATCACGATGTCGGACTTAAGCAGGGNGCGGTTTCANGTTAANNTGGCGTGTGTNGATTAAGTGTGC] consensusID : consensus_3788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 731 fasta sequence [CGACATAACCCATAACGTTAAAGCAAATCCCTTTCGGGGATGAAAAACAAACATAAAACACAAAAGCAGGATAAAGTAGCTGAAAACAAAACTTGTATCCTTTTTTGGTAAAAAAGAGAGAAAAATTGTGAAACTTAGAAGCAAAAAAAAAAAAGAACATAAATCAATCCCGCAATAAGATGTAGTGTAGAGGATGAAGACACGAAATCGTATCGAACTGTGCTATTGGACACGGACCTGCTCACAATGCATGCATTTTTGTTCCGTTTCGGAGAAATTCAACGTGTAACGTTAACGTA-ACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACGAAAGCGCATCCCACAGCGAGTCGCGGATGTTTTACCGTTCAGAGGGAGAGAAATACACGG-CTCACGATATACTTTACTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACGATCGAGGATGTGTGTCCCTCTTTTGCCAAAAGCACACGTGTGTAAGTGTGTGTGTGTGTTTATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATTTGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATAACGACAGGCCACAAGTTTCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTGTCTACTGTTGTGTGCAACCTGTTAGAAGTTTAGT] [+] EMBL BX622462 [CGACATAACCCATAACGTTAAAGCAAATCCCTTTCGGGGATGAAAAACAAACATAAAACACAAAAGCAGGATAAAGTAGCTGAAAACAAAACTTGTATCCTTTTTTGGTAAAAAAGAGAGAAAAATTGTGAAACTTAGAAGCAAAAAAAAAAAAGAACATAAATCAATCCCGCAATAAGATGTAGTGTAGAGGATGAAGACACGAAATCGTATCGAACTGTGCTATTGGACACGGACCTGCTCACAATGCATGCATTTTTGTTCCGTTTCGGAGAAATTCAACGTGTAACGTTAACGTA ACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACGAAAGCGCATCCCACAGCGAGTCGCGGATGTTTTACCGTTCAGAGGGAGAGAAATACACGG CTCACGATATACTTTACTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACGATCGAGGATGTGTGTCCCTCTTTTGCCAAAAGCACACGTGTGTAAGTGTGTGTGTGTGTTTATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATTTGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATAACGACAGGCCACAAGTTTCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTGTCTACTGTTGTGTGCAACCTGTTAGAAGTTTAGT] [+] EMBL BX622881 [ TCGTATCGAACTGTGCTATTGGACACGGACCTGCTCACANTGCATGCATTTTTGTTCCGTTTCGGAGAAATTCAACGTGTAACGTTAACGTAGACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACGAAAGNGCATCCCACAGCGAGTCGCGGATGTTTTACCGTTCAGAGGGAGAGAAATACACGGTCTCACGATATACTTTACTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACGATCGAGGATGTGTGTCCCTCTTTTGCCAAAAGCACACNTGTGTAAGTGTGTGTGTGTGTTTATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATTTGCGAAAAGACACTACCGAAACGACATGAGATACTGACNACGACATAACGACAGGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3788#0 CATCCCCCGAGGTTAAAAAGCACACGTGTNTAAGTGTCGTGTGTGTGTATATGCAAAAGC 60 consensus_3788#1 ------------------------------------------------------------ consensus_3788#0 GTGCTGCATCACATCCCGAGTGTTTCAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTG 120 consensus_3788#1 ------------------------------------------------------------ consensus_3788#0 AACAACAAAATATGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATAN 180 consensus_3788#1 ----------------------------------------------------CGACATAA 8 ******* consensus_3788#0 CGACAGGCCACAAGTATATCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTAGTCTA 240 consensus_3788#1 C------CCATA---ACGTTAAAGCAAATCCCTTTCG----GGGATGAAAAACAAACATA 55 * *** * * * * ** * ** * * * * * * * ** consensus_3788#0 ACTGTTGTGTGCGAAGCCTGGTATAGAAGTTTAGTAATTNTNATAAAAGGGTTTCGTTTC 300 consensus_3788#1 AAACACA-----AAAGCAGGATAAAGTAGCTGAAAA----CAAAACTTGTATCCTTTTTT 106 * **** * ** ** ** * * * * * * * *** consensus_3788#0 CGTNATAACCTTACCGCTGTTGTNGTAGTTGTAGCCCTTTATCGATATAGTAATAGTNNA 360 consensus_3788#1 GGTAAAAAAGAGAGAAAAATTGTGAAACTTAGAAGCAA-----AAAAAAAAAAGAACATA 161 ** * ** * **** * ** * * * * * ** * * consensus_3788#0 ATTAAAANANAGCATAATTGTTATACTAGTGTATATGNNATANCTGTNGTTACATAGTAN 420 consensus_3788#1 AATCAATCCCGCAATAA--GATGTAGTGTAGAGGATGAAG-ACACGAAATCGTATCGAAC 218 * * ** **** * * ** * * *** * * * ** * * consensus_3788#0 TATNGTAGCTAATAGACAC-TACCGCTAAGNCGTAAGGCCCTATACTACTATANNCTTGT 479 consensus_3788#1 TGTGCTATTGGACACGGACCTGCTCACAATGCATGCATTTTTGTTCCGTTTCGGAGAAAT 278 * * ** * * ** * * ** * * * * * * * consensus_3788#0 ACTNCTAGTAATCCTAGTNNATATATTATNTNCAAGGACTNTATATNNAAATAGGCCAAG 539 consensus_3788#1 TCAACGTGTAACGTTAACGTA-ACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACG 337 * * **** ** * * * * * ** * * ** * consensus_3788#0 AAAACTTACTNTACATAAGACCCTTGGATGNGANAGAANAACGATGANAAAGTNGGAAGT 599 consensus_3788#1 AAAGCGCATCCCACA-GCGAGTCGCGGATGTTTTACCGTTCAGA-GGGAGAGAAATACAC 395 *** * * *** ** * ***** * ** * * ** * consensus_3788#0 CACCAGAGAAGTACTNTGTCTCGAGTCAGGGCGAGNGGANAGTAGGTAGANCGCAAGGGC 659 consensus_3788#1 GGCTCACGATATACTTTA-CTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACG 454 * ** **** * **** ** * * * * ** * * consensus_3788#0 GTCGTTACCCCTTGGTTGTACCCCTTGGGTTANAAGAGAACCAAAGGTGGCGCCCGGAAG 719 consensus_3788#1 ATCGAGGA----TGTGTGTCCCTCTTTTGCCAAAAGCACACGTGTGTAAGTGTGTGTGTG 510 *** ** *** ** *** * * *** ** * * * * * consensus_3788#0 TATGGAGAACGGGAACNATCAAGACTAC-TGGCGAACANCCAGCTTGGATTTGTCANCGG 778 consensus_3788#1 TGTTTATG-CAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGG 569 * * * * * * * * ** * *** ** ** * *** ** consensus_3788#0 CCACACCGANAGTCANAAGCCCAACGACTTGGNANNTTGGTATGTTTAAAGGAAACNGNA 838 consensus_3788#1 GCGCAC-GACAGTGTGAACAACAA-AATTTGCGAAAAGACACTACCGAAACGACATGAGA 627 * *** ** *** ** *** * *** * * *** ** * * consensus_3788#0 TAGGTTGGTACAANGTAATGNGGTATTCNNNTCGTGGCGCANNTTGGCANTTTATTGGCA 898 consensus_3788#1 TAC-TGACGACGACATAACGACAGGCCACAAGTTTCAGAGGTAGCGCCAGCTGCTT--CA 684 ** * ** * *** * * * ** * ** ** consensus_3788#0 CCTTTNNACANATATCGCCATCACGATGTCGGACTTAAGCAGGGNGCGGTTTCANGTTAA 958 consensus_3788#1 GCCT-AAGCAGCTGT--CTACTGTTGTGTGCAACCTGTTAGAAGTTTAGT---------- 731 * * ** * * * * *** ** * * ** consensus_3788#0 NNTGGCGTGTGTNGATTAAGTGTGC 983 consensus_3788#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||