These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence [CGTAATTAGTGTGACACANTCCTTTTAAAACAGGCAATTTATCGAATAGGCAAGAGTTTTTAATTTCATAATTACTTCAGCGTTACGATATTAGTCGGCACGATTCAGCGACCCATTAAGAGTGGCTTTCAATGTGTTCTTGCGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTGTTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTTGCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAGTGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAATGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGCCTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACCAACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACNAACATTTAAAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTGATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGNCTATGATAACTCGCAAAAAAGATATTTAAAACATAATCATCTTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTACTACCNCCNCCTATTACTACTACTATTTACTACTACTACCACTACTATTTCATACTTGAATTAACTACTNC] [+] EMBL BX626492 [CGTAATTAGTGTGACACANTCCTTTTAAAACAGGCAATTTATCGAATAGGCAAGAGTTTTTAATTTCATAATTACTTCAGCGTTACGATATTAGTCGGCACGATTCAGCGACCCATTAAGAGTGGCTTTCAATGTGTTCTTGCGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTGTTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTTGCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAGTGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAATGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGCCTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACCAACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACNAACATTTAAAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTGATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGNCTATGATAACTCGCAAAAAAGATATTTAAAACATAATCATCTTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTACTACCNCCNCCTATTACTACTACTATTTACTACTACTACCACTACTATTTCATACTTGAATTAACTACTNC] consensusID : consensus_379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CAGAATCGGNCACGAGGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTGTTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTTGCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAGTGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAATGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGCCTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACCAACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACAAACATTTAAAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTGATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGTCTATGATAACTCGCAAAAAAGATATTTAAAACATAATCATCTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTACTACCACCACTATTACTACTACTATTTACTACTACTACCACTACTATTCATACTTGAATTAACTACTTCCCTCCCTGTTCTACTAGGCTAACGATTATGATGATGCTAAGAGCGTAAGT] [+] EMBL BX467366 [CAGAATCGGNCACGAGGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTGTTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTTGCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAGTGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAATGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGCCTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACCAACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACAAACATTTAAAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTGATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGTCTATGATAACTCGCAAAAAAGATATTTAAAACATAATCATCTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTACTACCACCACTATTACTACTACTATTTACTACTACTACCACTACTATTCATACTTGAATTAACTACTTCCCTCCCTGTTCTACTAGGCTAACGATTATGATGATGCTAAGAGCGTAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_379#0 CGTAATTAGTGTGACACANTCCTTTTAAAACAGGCAATTTATCGAATAGGCAAGAGTTTT 60 consensus_379#1 ------------------------------------------------------------ consensus_379#0 TAATTTCATAATTACTTCAGCGTTACGATATTAGTCGGCACGATTCAGCGACCCATTAAG 120 consensus_379#1 ------------------------------------------------------------ consensus_379#0 AGTGGCTTTCAATGTGTTCTTGCGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTG 180 consensus_379#1 -------CAGAATCGGNCACGAGGTAGTCTTACTGTATAGTGTTACTGTTCCTTTCTTTG 53 *** * ************************************* consensus_379#0 TTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTT 240 consensus_379#1 TTTGTTTGCTACCCAAAGCAAAAGCAGCAACATGTGATTAGTTTTCGTAGAGTCTGGTTT 113 ************************************************************ consensus_379#0 GCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAG 300 consensus_379#1 GCCTAGTGCCTTGTTTCGTCCGCTTTTCATTCACGCTCTATCTATCCGTACCTTTTCCAG 173 ************************************************************ consensus_379#0 TGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAA 360 consensus_379#1 TGTGTTCGTGTGCCTTAATATACAAAGTTAATATACAACCCGACGATGGGCCGGGGAAAA 233 ************************************************************ consensus_379#0 TGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGC 420 consensus_379#1 TGAGAAACCTGGTACCATGTTCCGATATTTGCCGTACTACCGAATTGCCTAGTAAAATGC 293 ************************************************************ consensus_379#0 CTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACC 480 consensus_379#1 CTTCCGCAAGCAGACAGAAATACAAGATGAAATCTAAATCCGAGGATACCAAACACTACC 353 ************************************************************ consensus_379#0 AACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACNAACATTTA 540 consensus_379#1 AACCAAGGTGTATTGTTGAAACGAAGTAAGATAGCGAACAAAAACGGAAACAAACATTTA 413 *************************************************** ******** consensus_379#0 AAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTG 600 consensus_379#1 AAAGAGTGTGCGTGTGTGTGTTTCGTGTGCAGCTGTTTAAACGTATTTACAAACGTATTG 473 ************************************************************ consensus_379#0 ATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGNCTATGATAACTCGCAAAAAAG 660 consensus_379#1 ATCTGTGTAAGTTGCAAAGAAGCCCAGATTAGTTTTGGTCTATGATAACTCGCAAAAAAG 533 ************************************** ********************* consensus_379#0 ATATTTAAAACATAATCATCTTTTTGATACTGCAAATAACACTCTTGCTTCTACTACTAC 720 consensus_379#1 ATATTTAAAACATAATCATCTTTT-GATACTGCAAATAACACTCTTGCTTCTACTACTAC 592 ************************ *********************************** consensus_379#0 TACCNCCNCCTATTACTACTACTATTTACTACTACTACCACTACTATTTCATACTTGAAT 780 consensus_379#1 TACCACCAC-TATTACTACTACTATTTACTACTACTACCACTACTATT-CATACTTGAAT 650 **** ** * ************************************** *********** consensus_379#0 TAACTACTNC-------------------------------------------------- 790 consensus_379#1 TAACTACTTCCCTCCCTGTTCTACTAGGCTAACGATTATGATGATGCTAAGAGCGTAAGT 710 ******** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||