These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [GCAGATCGCCGAGGTTAAAGAGAGATATATAGAAAGAGCAGAATAGATCGAAAGGAATGTTCGTGTGATTCGAAGAACGGNGATTGATAGTCATAGTTTGTATATCAAAAAAACACAAACCCTCAATTCACAATTATGCTGCAGCGCATATTGCGAGCAACCGGGAGAGCCCACGGGTGCGCACACAGATGCGCGAATAGCGTGTAAACACGATATCATTAAGTATACGATATTTATCCACCATATTACCATTGAACGCTCCGGGTAGCTTCGAGGTTACTGTGTACACTGTNATCGTGTTATNTATTGTGTANCGTGTCATATTTTACTATGGTTATATNAGTTATATCGTTCATCTAGCAAGCAAAGAATGTTTTNATCATATATCNATCTATCTTATATACTGGTAGTTAACTATATCTCTCNCGATNTCAATGTTCTCTCACATCAGTNCGTAGTATACGTTCTTGGCAGTNACGTATATACACGTATCGATACTTATAGGTACGCGACCCCAATCTATTGCGAAGGTGCATATCAACTCTATATNCAATATACTTCCGGTTACTTCTCTNTATACCGNTNTGATTCGTNGCGTACGAAGCATGTGCCGCATGCGTGCAACCAGCTGTATCGTGAAGTTCACCGAGTTGNANNAAAATATAGGAGACNNAANACTTATGAAGGAACGNCTC] [+] EMBL AL693984 [GCAGATCGCCGAGGTTAAAGAGAGATATATAGAAAGAGCAGAATAGATCGAAAGGAATGTTCGTGTGATTCGAAGAACGGNGATTGATAGTCATAGTTTGTATATCAAAAAAACACAAACCCTCAATTCACAATTATGCTGCAGCGCATATTGCGAGCAACCGGGAGAGCCCACGGGTGCGCACACAGATGCGCGAATAGCGTGTAAACACGATATCATTAAGTATACGATATTTATCCACCATATTACCATTGAACGCTCCGGGTAGCTTCGAGGTTACTGTGTACACTGTNATCGTGTTATNTATTGTGTANCGTGTCATATTTTACTATGGTTATATNAGTTATATCGTTCATCTAGCAAGCAAAGAATGTTTTNATCATATATCNATCTATCTTATATACTGGTAGTTAACTATATCTCTCNCGATNTCAATGTTCTCTCACATCAGTNCGTAGTATACGTTCTTGGCAGTNACGTATATACACGTATCGATACTTATAGGTACGCGACCCCAATCTATTGCGAAGGTGCATATCAACTCTATATNCAATATACTTCCGGTTACTTCTCTNTATACCGNTNTGATTCGTNGCGTACGAAGCATGTGCCGCATGCGTGCAACCAGCTGTATCGTGAAGTTCACCGAGTTGNANNAAAATATAGGAGACNNAANACTTATGAAGGAACGNCTC] consensusID : consensus_3790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence [CCGATCAAGCACAGGCTGCAGGCTGTACCAAGTAGCGGGA--AAGCATTACTAATTCATTATACTATT-TTAAGCGATCATTACTAACAACACCTTACTTTTACTATTTGGAGAGAATCAACAGAGAGAGAGATATATATATAGAAAGAGAGAATAAGATTCGAAAGGAATGTTCGTGTGATTCGAAGAACGGCGATTGATAGTCATAGTTTTTATATCAAAAAAACACAAACCCTCAATTCACAATTTGCTGCAGCTCATATTGCGAGCAACCGGGAGAGCCCACGGGTGCGCACACAGATGCGCGAATAGCGTGTAAACACGATTCATTTGTTACGATTTTATCCACCATTTTACCATTGAACGCTCCGGGTAGCTTCGAGGTTTCTGTGTTTTCTGTTATCGTGTTAATTATTGTCTTTCGTGTCATTTTTAGTATGTTTTTTTATTGTTTTTTCAACAAGAATGTTTT-TTCTTCTTTTATGTGTTACTGTTTTTGATTTCATTGTTTTTTTCTGTTGTTGTTACGTTCTTTCGTTACGTTTTACGTTCATTTCGTT---TTTGGTT-CGCCTCCCACTCCCTGCGAAGGTGATATCAACTCTTTTTTTTAATATACTTCC-GTT-T--CTT-TC-TCTTATCC---GTTTT---TATTGGT--GCGTACGAACGTGTGCCGCATGCGTGCAAC-AGCTGT] [+] EMBL BM623634 [CCGATCAAGCACAGGCTGCAGGCTGTACCAAGTAGCGGGA AAGCATTACTAATTCATTATACTATT TTAAGCGATCATTACTAACAACACCTTACTTTTACTATTTGGAGAGAATCAACAGAGAGAGAGATATATATATAGAAAGAGAGAATAAGATTCGAAAGGAATGTTCGTGTGATTCGAAGAACGGCGATTGATAGTCATAGTTTTTATATCAAAAAAACACAAACCCTCAATTCACAATTTGCTGCAGCTCATATTGCGAGCAACCGGGAGAGCCCACGGGTGCGCACACAGATGCGCGAATAGCGTGTAAACACGATTCATTTGTTACGATTTTATCCACCATTTTACCATTGAACGCTCCGGGTAGCTTCGAGGTTTCTGTGTTTTCTGTTATCGTGTTAATTATTGTCTTTCGTGTCATTTTTAGTATGTTTTTTTATTGTTTTTTCAACAAGAATGTTTT TTCTTCTTTTATGTGTTACTGTTTTTGATTTCATTGTTTTTTTCTGTTGTTGTTACGTTCTTTCGTTACGTTTTACGTTCATTTCGTT TTTGGTT CGCCTCCCACTCCCTGCGAAGGTGATATCAACTCTTTTTTTTAATATACTTCC GTT T CTT TC TCTTATCC GTTTT TATTGGT GCGTACGAACGTGTGCCGCATGCGTGCAAC AGCTGT] [+] EMBL BX467953 [ gCAAGAATCGGCACGATGGA TACTAATTCATTATACTATTCTTAAGCGATCATTACTAACAACACCTTACTTTTACTATTTGGAGAGAATCAACAGAGAGAGAGATATATATATAGAAAGAGAGAATAAGATTCGAAAGGAATGTTCGTGTGATTCGAAGAACGGCGATTGATAGTCATAGTTTTTATATCAAAAAAACACAAACCCTCAATTCACAATTTGCTGCAGCGCATATTGCGAGCAACCGGGAGAGCCCACGGGTGCGCACACAGATGCGCGAATAGCGTGTAAACACGATTCATTTGTTACGATTTTATCCACCATTTTACCATTGAACGCTCCGGGTAGCTTCGAGGTTTCTGTGTTTTCTGTTATCGTGTTAATTATTGTCTTTCGTGTCATTTTTAGTATG TTTTTTATTGTTTTTTCAACAAGAATGTTTTGTTCTTCTTTTATGTGTTACTGTTTTTGATTTCATTG TTTTTCTGTTGTTGTTACGTTCTTTCGTTACGTTTTACGTTCATTTCGTTANAATAGGTTACGCCTCCCACTCCCTGCGAAGGTGATATCAACTC TTAAGATAATATACTTCCGGTTGTGCCTTNTCGTCTTATCCGGGGTGATAGACATTCGTTAGCGTACGAACGTGTGCCGCATGCGTGCAACAAGCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3790#0 ------------------------------------------------------------ consensus_3790#1 CCGATCAAGCACAGGCTGCAGGCTGTACCAAGTAGCGGGAAAGCATTACTAATTCATTAT 60 consensus_3790#0 -------------------------------------------------GCAGATCGCCG 11 consensus_3790#1 ACTATTTTAAGCGATCATTACTAACAACACCTTACTTTTACTATTTGGAGAGAATCAACA 120 * *** * consensus_3790#0 AGGTTAAAGAGAGATATATAGAAAGAGCAGAATAGAT-CGAAAGGAATGTTCGTGTGATT 70 consensus_3790#1 GAGAGAGAGATATATATATAGAAAGAGAGAATAAGATTCGAAAGGAATGTTCGTGTGATT 180 * * *** * ************** * **** ********************** consensus_3790#0 CGAAGAACGGNGATTGATAGTCATAGTTTGTATATCAAAAAAACACAAACCCTCAATTCA 130 consensus_3790#1 CGAAGAACGGCGATTGATAGTCATAGTTTTTATATCAAAAAAACACAAACCCTCAATTCA 240 ********** ****************** ****************************** consensus_3790#0 CAATTATGCTGCAGCGCATATTGCGAGCAACCGGGAGAGCCCACGGGTGCGCACACAGAT 190 consensus_3790#1 CAATT-TGCTGCAGCTCATATTGCGAGCAACCGGGAGAGCCCACGGGTGCGCACACAGAT 299 ***** ********* ******************************************** consensus_3790#0 GCGCGAATAGCGTGTAAACACGATATCATTAAGTATACGATATTTATCCACCATATTACC 250 consensus_3790#1 GCGCGAATAGCGTGTAAACACGAT-TCATTTGTTA--CGAT-TTTATCCACCATTTTACC 355 ************************ ***** ** **** ************ ***** consensus_3790#0 ATTGAACGCTCCGGGTAGCTTCGAGGTTACTGTGTACACTGTNATCGTGTTATNTATTGT 310 consensus_3790#1 ATTGAACGCTCCGGGTAGCTTCGAGGTTTCTGTGTTTTCTGTTATCGTGTTAATTATTGT 415 **************************** ****** **** ********* ****** consensus_3790#0 GTANCGTGTCATATTTTACTATGGTTATATNAGTTATATCGTTCATCTAGCAAGCAAAGA 370 consensus_3790#1 CTTTCGTGTCAT-TTTTAGTATGTTT-------TTTTATTGTTTTTTCAACAA-----GA 462 * ******** ***** **** ** ** *** *** * * *** ** consensus_3790#0 ATGTTTTNATCATATATCNATCTATCTTATATACTGGTAGTTAACTATATCTCTCNCGAT 430 consensus_3790#1 ATGTTTTT--------TCT---TCTTTTATGTGTT--------ACTGT-----TTTTGAT 498 ******* ** * * **** * * *** * * *** consensus_3790#0 NTCAATGTTCTCTCACATCAGTNCGTAGTATACGTTCTTGGCAGTNACGTATATACACGT 490 consensus_3790#1 TTCATTGTTTTTTTCTGTTGTTGT------TACGTTCTT--TCGTTACGTTT-TACGTTC 549 *** **** * * * * ********* ** **** * *** consensus_3790#0 ATCGATACTTATAGGTACGCGACCCCAATCTATTGCGAAGGTGCATATCAACTCTATATN 550 consensus_3790#1 ATT--TCGTTTTTGGTTCGC--CTCCCACTCCCTGCGAAGGTG-ATATCAACTCTTTTTT 604 ** * ** * *** *** * ** * ********** *********** * * consensus_3790#0 C-AATATACTTCCGGTTACTTCTCTNTATACCGNTNTGATTCGTNGCGTACGAAGCATGT 609 consensus_3790#1 TTAATATACTTCCGTTTCTTTCTCTT-AT-CCGTTTTTATT-GGTGCGTACGAA-CGTGT 660 ************ ** ****** ** *** * * *** * ********* * *** consensus_3790#0 GCCGCATGCGTGCAACCAGCTGTATCGTGAAGTTCACCGAGTTGNANNAAAATATAGGAG 669 consensus_3790#1 GCCGCATGCGTGCAAC-AGCTGT------------------------------------- 682 **************** ****** consensus_3790#0 ACNNAANACTTATGAAGGAACGNCTC 695 consensus_3790#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||