cluster # 3793

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Anopheles gambiae
cluster # 3793 cluster # 3793 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3793#0 length = 779 sequences # 1

consensus_3793#1 length = 759 sequences # 2

consensusID : consensus_3793#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence

                              [TTTAATAAATATTCAAAATGCACGATATTATCATTCAAACAGTGTCGAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCTGTCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTATGGCCCAGCTGCTCGGTCATGCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAACCTGGCAGGACCTGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTTGATCGATGAGCGTGAACCGGCGGCGAAGGAGGTGTACCGCTGGCTGGCAATCGTTCGACTGGAACGTTAGCTGGACTTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTNTCGANACACTGGGTCGANGAGCAGGCTGGACACAGNGCTCAACTACGGGCAGCCTCGAGGCGGCNCTGCTCCGNGCACTGACCTGAACTTGTGANNTATGACTAACAACGGAAGCCAGTATTAACCAAAGTTATCCCCAATGCTTTACAAATAGCTGTATCCCGAGGTTTACCTATTTCAACATCANNCNCTTCCCCTATCAAAGTTACCTCTTCTAACATNATAGTCATATAGCAGTAGCTAACCGTNTNCACATCTTTAATCCGAAT]

[+] EMBL AL694100             [TTTAATAAATATTCAAAATGCACGATATTATCATTCAAACAGTGTCGAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCTGTCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTATGGCCCAGCTGCTCGGTCATGCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAACCTGGCAGGACCTGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTTGATCGATGAGCGTGAACCGGCGGCGAAGGAGGTGTACCGCTGGCTGGCAATCGTTCGACTGGAACGTTAGCTGGACTTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTNTCGANACACTGGGTCGANGAGCAGGCTGGACACAGNGCTCAACTACGGGCAGCCTCGAGGCGGCNCTGCTCCGNGCACTGACCTGAACTTGTGANNTATGACTAACAACGGAAGCCAGTATTAACCAAAGTTATCCCCAATGCTTTACAAATAGCTGTATCCCGAGGTTTACCTATTTCAACATCANNCNCTTCCCCTATCAAAGTTACCTCTTCTAACATNATAGTCATATAGCAGTAGCTAACCGTNTNCACATCTTTAATCCGAAT]




>consensus_3793#0
TTTAATAAATATTCAAAATGCACGATATTATCATTCAAACAGTGTCGAGCAAGATTTTAC
AGAGGCCATTTTCCTGCTTATCGATTACATCTGTCGAGGTGCCCCGGCAAAGCCAGCAGT
GTCGCGACCGTTATGGCCCAGCTGCTCGGTCATGCCACCTCCAGCGACGAGCTGAAACAC
ACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATACTGCATCGGTGAGGTGGATGAAGTG
CGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAACCTGGCAGGACCTGGGTGGTGGAAA
TAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTTGATCGATGAGCGTGAACCGGCGG
CGAAGGAGGTGTACCGCTGGCTGGCAATCGTTCGACTGGAACGTTAGCTGGACTTATGGG
AAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGTAGCACTTGCCTGCCGGGA
TGGTGCAGCGAAGCCGCACACGATCAGCTNTCGANACACTGGGTCGANGAGCAGGCTGGA
CACAGNGCTCAACTACGGGCAGCCTCGAGGCGGCNCTGCTCCGNGCACTGACCTGAACTT
GTGANNTATGACTAACAACGGAAGCCAGTATTAACCAAAGTTATCCCCAATGCTTTACAA
ATAGCTGTATCCCGAGGTTTACCTATTTCAACATCANNCNCTTCCCCTATCAAAGTTACC
TCTTCTAACATNATAGTCATATAGCAGTAGCTAACCGTNTNCACATCTTTAATCCGAAT

consensusID : consensus_3793#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 759
fasta sequence

                              [ACTTTCGCACCGAGAGGATTATTTTTTTAAATAAATATCCAAAATGCACGATATTATCATTCAAACAGTGTCCGAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCGTCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTTGGCCCAGCTGCTCGGTCATGCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAACCGGCAGGACCGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTTGATCGATGAGGTGAACCGGCGGGAAGGAGGTGTACCGCTGGTGGAATCGTTCGACTGGAACGTTAGCTGGATTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTTCGAAATGGGTCGAGAGCAGGTGGAACAGGTAATACGGGAGCTCGAGGCGGTTGTTGGATGACTGAATTTGTGAGTATGACTAACAACGGAAGCCAGTTTAACAAAGTTTCCCCAATGCTTTACAATAGCTGTATCCCGAGGTTTCCTTTTCAAATTAAATTCCTATCAAGTTACTCTTCTAAATTTGTCATTAGAGTGCTAAAG-TTTAATTTTAATCGAATAAAATATGTA]

[+] EMBL BX627882             [ACTTTCGCACCGAGAGGATTATTTTTTTAAATAAATATCCAAAATGCACGATATTATCATTCAAACAGTGTCCGAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCGTCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTTGGCCCAGCTGCTCGGTCATGCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAACCGGCAGGACCGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTTGATCGATGAGGTGAACCGGCGGGAAGGAGGTGTACCGCTGGTGGAATCGTTCGACTGGAACGTTAGCTGGATTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTTCGAAATGGGTCGAGAGCAGGTGGAACAGGTAATACGGGAGCTCGAGGCGGTTGTTGGATGACTGAATTTGTGAGTATGACTAACAACGGAAGCCAGTTTAACAAAGTTTCCCCAATGCTTTACAATAGCTGTATCCCGAGGTTTCCTTTTCAAATTAAATTCCTATCAAGTTACTCTTCTAAATTTGTCATTAGAGTGCTAAAG TTTAATTTTAATCGAATAAAATATGTA]
[+] EMBL BX622583             [                                                                                 TTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCGTCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTTGGCCCAGCTGCTCGGTCATGCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAACCGGCAGGACCGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTTGATCGATGAGGTGAACCGGCGGGAAGGAGGTGTACCGCTGGTGGAATCGTTCGACTGGAACGTTAGCTGGATTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTTCGAAATGGGTCGAGAGCAGGTGGAACAGGTAATACGGGAGCTCGAGGCGGTTGTTGGATGACTGAATTTGTGAGTATGACTAACAACGGAAGCCAGTTTAACAAAGTTTCCCCAATGCTTTACAATAGCTGTATCCCGAGGTTTCCTTTTCAAATTAAATTCCTATCAAGTTACTCTTCTAAATTTGTCATTAGAGTGCTAAAGTTTTATTTTTAATCGAAT AAATATG  ]




>consensus_3793#1
ACTTTCGCACCGAGAGGATTATTTTTTTAAATAAATATCCAAAATGCACGATATTATCAT
TCAAACAGTGTCCGAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCGT
CGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTTGGCCCAGCTGCTCGGTCATGC
CACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATA
CTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAA
CCGGCAGGACCGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTT
GATCGATGAGGTGAACCGGCGGGAAGGAGGTGTACCGCTGGTGGAATCGTTCGACTGGAA
CGTTAGCTGGATTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGT
AGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTTCGAAATGGGTCG
AGAGCAGGTGGAACAGGTAATACGGGAGCTCGAGGCGGTTGTTGGATGACTGAATTTGTG
AGTATGACTAACAACGGAAGCCAGTTTAACAAAGTTTCCCCAATGCTTTACAATAGCTGT
ATCCCGAGGTTTCCTTTTCAAATTAAATTCCTATCAAGTTACTCTTCTAAATTTGTCATT
AGAGTGCTAAAGTTTAATTTTAATCGAATAAAATATGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3793#0      --------------------------TTTAATAAATATTCAAAATGCACGATATTATCAT 34
consensus_3793#1      ACTTTCGCACCGAGAGGATTATTTTTTTAAATAAATATCCAAAATGCACGATATTATCAT 60
                                                ** ********* *********************

consensus_3793#0      TCAAACAGTGTC-GAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCTG 93
consensus_3793#1      TCAAACAGTGTCCGAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATC-G 119
                      ************ ********************************************* *

consensus_3793#0      TCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTATGGCCCAGCTGCTCGGTCAT 153
consensus_3793#1      TCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTT-TGGCCCAGCTGCTCGGTCAT 178
                      *************************************** ********************

consensus_3793#0      GCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAA 213
consensus_3793#1      GCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAA 238
                      ************************************************************

consensus_3793#0      TACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCG 273
consensus_3793#1      TACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCG 298
                      ************************************************************

consensus_3793#0      AACCTGGCAGGACCTGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGAC 333
consensus_3793#1      AACC-GGCAGGACC-GGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGAC 356
                      **** ********* *********************************************

consensus_3793#0      GGTTGATCGATGAGCGTGAACCGGCGGCGAAGGAGGTGTACCGCTGGCTGGCAATCGTTC 393
consensus_3793#1      GGTTGATCGATGAG-GTGAACCGGCGG-GAAGGAGGTGTACCGCTGGTGG--AATCGTTC 412
                      ************** ************ *******************  *  ********

consensus_3793#0      GACTGGAACGTTAGCTGGACTTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCT 453
consensus_3793#1      GACTGGAACGTTAGCTGGA-TTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCT 471
                      ******************* ****************************************

consensus_3793#0      GTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTNTCG 513
consensus_3793#1      GTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTT-CG 530
                      ********************************************************  **

consensus_3793#0      ANACACTGGGTCGANGAGCAGGCTGGACACAGNGCTCAACTACGGGCAGCCTCGAGGCGG 573
consensus_3793#1      AAA---TGGGTCGAG-AGCAGGTGGAACAGGTAA------TACGGG--AGCTCGAGGCGG 578
                      * *   ********  ******  * ***           ******    **********

consensus_3793#0      CNCTGCTCCGNGCACTGACCTGAACTTGTGANNTATGACTAACAACGGAAGCCAGTATTA 633
consensus_3793#1      TT-------GTTGGATGAC-TGAATTTGTGAGT-ATGACTAACAACGGAAGCCAGT-TTA 628
                               *     **** **** ******   ********************** ***

consensus_3793#0      ACCAAAGTTATCCCCAATGCTTTACAAATAGCTGTATCCCGAGGTTTACCTATTTCAACA 693
consensus_3793#1      AC-AAAGTT-TCCCCAATGCTTTACAA-TAGCTGTATCCCGAGGTTTCCTT--TTCAA-A 682
                      ** ****** ***************** ******************* * *  ***** *

consensus_3793#0      TCANNCNCTTCCCCTATCAAAGTTACCTCTTCTAACATNATAGTCATATAGCAGTAGCTA 753
consensus_3793#1      TTAAATT-----CCTATCAA-GTTAC-TCTTCTAAATTTGTCATTAGAGTGCTAAAGTTT 735
                      * *         ******** ***** ********  *  *  * * *  **   ** * 

consensus_3793#0      ACCGTNTNCACATCTTTAATCCGAAT 779
consensus_3793#1      AAT-TTTAATCGAATAAAATATGTA- 759
                      *   * *   *   *  ***  * *