These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1014 fasta sequence [TCCCCGAGGTTTAATGGCAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGG-TGGAATTAACTATTCCGATTCCGGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGA-CTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCT-CTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGACGCAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAACAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGNTGGACGTNGTGCGAGCCTGTACGATACTGNATGTGGCTGGTCATGTANTACGCNCTGGAACCGAACGACTTGATGGGCTCCCCGTAAAAAGGTCCTTTATACGGGTNCNGTACAACAACAAAGGGATTAGACNGGAAGTCACCNGTTGAANCCGGGTTGGCACTGGGGAAAGNTTGGGCTGTGACTAACCCGCGAATCCGCGCAGACTGGCANGAAACCGTTGACANGCATCAAGCCNATTCCCGACACCACTCTCTGCAAACTNACCAACGATTACCCAGGTCNGCGCANACAGNCTGGNCTACGTCACCACTGTNTTTCAACTNAACATGGCCNGCTACGAACNNCACTACCTTAAAAC] [+] EMBL AL694172 [TCCCCGAGGTTTAATGGCAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGG TGGAATTAACTATTCCGATTCCGGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGA CTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCT CTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAA ] [+] EMBL AL929921 [ ggttAAAAC AGGACGAGTTTCGGNNGGAAT ACTATTCCGATTCCGGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACCTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTACTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGACGCAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAACAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGNTGGACGTNGTGCGAGCCTGTACGATACTGNATGTGGCTGGTCATGTANTACGCNCTGGAACCGAACGACTTGATGGGCTCCCCGTAAAAAGGTCCTTTATACGGGTNCNGTACAACAACAAAGGGATTAGACNGGAAGTCACCNGTTGAANCCGGGTTGGCACTGGGGAAAGNTTGGGCTGTGACTAACCCGCGAATCCGCGCAGACTGGCANGAAACCGTTGACANGCATCAAGCCNATTCCCGACACCACTCTCTGCAAACTNACCAACGATTACCCAGGTCNGCGCANACAGNCTGGNCTACGTCACCACTGTNTTTCAACTNAACATGGCCNGCTACGAACNNCACTACCTTAAAAC] consensusID : consensus_3800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence [AATTGCAAGTAACGGTCCGTTGACTGTAGGCGTTGTTGGCAAATGGCAAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACCTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGAGAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAAAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGATGGACGTTTTGTGCGAGCTGTACGATACTGTTATGTGGCTGGTCATGTATACGCATGGAACCGAACGACTTGATGGCTCCCCGTAAAGTCCTTTTAGGTCGTCACACAAGGATAGAGGGAGTCACGTGACAGGTTGGAATGGG] [+] EMBL BX607007 [AATTGCAAGTAACGGTCCGTTGACTGTAGGCGTTGTTGGCAAATGGCAAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACCTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGAGAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAAAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGATGGACGTTTTGTGCGAGCTGTACGATACTGTTATGTGGCTGGTCATGTATACGCATGGAACCGAACGACTTGATGGCTCCCCGTAAAGTCCTTTTAGGTCGTCACACAAGGATAGAGGGAGTCACGTGACAGGTTGGAATGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3800#0 -----------------------------TCCCCGAGGTTTAATGGCA-GAATTCTATGG 30 consensus_3800#1 AATTGCAAGTAACGGTCCGTTGACTGTAGGCGTTGTTGGCAAATGGCAAGAATTCTATGG 60 * * * ******* *********** consensus_3800#0 AATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAG 90 consensus_3800#1 AATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAG 120 ************************************************************ consensus_3800#0 TTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTATTCCGATTCC 150 consensus_3800#1 TTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTAT--------- 171 *************************************************** consensus_3800#0 GGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTT 210 consensus_3800#1 ---------------------------------------TCCGGAATCAATACTGGATTT 192 ********************* consensus_3800#0 GATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGAC- 269 consensus_3800#1 GATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACC 252 *********************************************************** consensus_3800#0 TAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAG 329 consensus_3800#1 TAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAG 312 ************************************************************ consensus_3800#0 CTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACC 389 consensus_3800#1 CTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACC 372 ************************************************************ consensus_3800#0 CGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTC 449 consensus_3800#1 CGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTC 432 ************************************************************ consensus_3800#0 CCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCC 509 consensus_3800#1 CCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCC 492 ************************************************************ consensus_3800#0 CGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGACGCA 569 consensus_3800#1 CGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGAG--A 550 ******************************************************** * consensus_3800#0 GAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAACAGATCGATGGATGAGCC 629 consensus_3800#1 GAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAA-AGATCGATGGATGAGCC 609 ****************************************** ***************** consensus_3800#0 GATACAACTTGTACGAGTGCGTGNTGGACGTN--GTGCGAGCCTGTACGATACTGN-ATG 686 consensus_3800#1 GATACAACTTGTACGAGTGCGTGATGGACGTTTTGTGCGAGC-TGTACGATACTGTTATG 668 *********************** ******* ******** ************ *** consensus_3800#0 TGGCTGGTCATGTANTACGCNCTGGAACCGAACGACTTGATGGGCTCCCCGTAAAAAGGT 746 consensus_3800#1 TGGCTGGTCATGTAT-ACGCA-TGGAACCGAACGACTTGATGG-CTCCCCGTAAA---GT 722 ************** **** ********************* *********** ** consensus_3800#0 CCTTTATACGGGTNCNGTACAACAACAAAGGGATTAGACNGGAAGTCACCNGTTGAANCC 806 consensus_3800#1 CCTTT-TA-GGTCGTCACACAAGGATAGAGGGAGTC------ACGTGACAGGTTGGAATG 774 ***** ** ** **** * * ***** * * ** ** **** * consensus_3800#0 GGGTTGGCACTGGGGAAAGNTTGGGCTGTGACTAACCCGCGAATCCGCGCAGACTGGCAN 866 consensus_3800#1 GG---------------------------------------------------------- 776 ** consensus_3800#0 GAAACCGTTGACANGCATCAAGCCNATTCCCGACACCACTCTCTGCAAACTNACCAACGA 926 consensus_3800#1 ------------------------------------------------------------ consensus_3800#0 TTACCCAGGTCNGCGCANACAGNCTGGNCTACGTCACCACTGTNTTTCAACTNAACATGG 986 consensus_3800#1 ------------------------------------------------------------ consensus_3800#0 CCNGCTACGAACNNCACTACCTTAAAAC 1014 consensus_3800#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||