These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3804#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [TTGTGTATCCAGTTGGAAGTGAGCTACTCGGAGCTACGCTGCGTGAAAGGGCAAGCCGATCCGATGATAGCACGAAAACGCGTTTAAAGGCGGTTTAGGTTAAAAACAGGGGGAGAAAGAGGGTGTTCTACATACAAACAAATATTACAGTATGCCTGTCTGGTTCGATAATTACAACTAGGCTCAAAAATTTGATATTTTCCCACCCCGAATGATAATAGTTTTTATCAAAATCGTTCAATATTGATAACCACAACAATACTCACGATCATAGTTAGCACACTGTATTCTCTGTATTCGCGTGTGTTTGTGTGTGACAGCACCTTCATAATACAAATCCTTTCGCCTTTAACTGCCATACACAACGGGTATTCTGGTTCGATTTCTAAGCTTTCTTTTACACAACTTCCTGTTCCTGTTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTCACGTGTCTAATAGGAGACAAAATGTGTTCCCCTGCCAAAAAAGGGATATACAAGCACGGCGCACCACGCGTATAATATACCCAAAACATACAAGGGGGGGG] [+] EMBL BX625115 [TTGTGTATCCAGTTGGAAGTGAGCTACTCGGAGCTACGCTGCGTGAAAGGGCAAGCCGATCCGATGATAGCACGAAAACGCGTTTAAAGGCGGTTTAGGTTAAAAACAGGGGGAGAAAGAGGGTGTTCTACATACAAACAAATATTACAGTATGCCTGTCTGGTTCGATAATTACAACTAGGCTCAAAAATTTGATATTTTCCCACCCCGAATGATAATAGTTTTTATCAAAATCGTTCAATATTGATAACCACAACAATACTCACGATCATAGTTAGCACACTGTATTCTCTGTATTCGCGTGTGTTTGTGTGTGACAGCACCTTCATAATACAAATCCTTTCGCCTTTAACTGCCATACACAACGGGTATTCTGGTTCGATTTCTAAGCTTTCTTTTACACAACTTCCTGTTCCTGTTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTCACGTGTCTAATAGGAGACAAAATGTGTTCCCCTGCCAAAAAAGGGATATACAAGCACGGCGCACCACGCGTATAATATACCCAAAACATACAAGGGGGGGG] consensusID : consensus_3804#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 317 fasta sequence [GCCCCGAATGTAAACACACACACACAACGGGGTAATAGTTTTTTATCAAAATCGTT-CAAT-ATT-GATAGCCACAACAATACTCACGATCATAGTTAGCACATTGTATTCTCTGTATTCGCGTGTGTATATGTGTGACAGCACCTTCATAATACAAATCCTTTCGCGCTTTAGCTGCCATACACAACGGATATTCTGGTTCGATTTCTAAGCTTTCTTTTACACGACTTCCTGTTCCTGTTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTCGCCTGCGGACGCGTGGGCGG] [-] EMBL BM617680 [GCCCCGAATGTAAACACACACACACAACGGGGTAATAGTTTTTTATCAAAATCGTT CAAT ATT GATAGCCACAACAATACTCACGATCATAGTTAGCACATTGTATTCTCTGTATTCGCGTGTGTATATGTGTGACAGCACCTTCATAATACAAATCCTTTCGCGCTTTAGCTGCCATACACAACGGATATTCTGGTTCGATTTCTAAGCTTTCTTTTACACGACTTCCTGTTCCTGTTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTCGCCTGCGGACGCGTGGGCGG] [-] EMBL BM604570 [ CACACACA AACGGGGTAATAG TTTTTATCAAAATCGTTCCCATAATTGGATAACCACAGCAATACTCACGATCATAGTTAGCACATTGTATTCTCTGTATTCGCGTGTGTATGTGTGTGACAGCACCTTCATAATACAAATCCTTTCGCGCTTTAGCTGCCATACACAACGGGTATTCTGGTTCGATTTCTAAGCTTTCTTTTACACAAC TTCCTGTTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCgg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3804#0 TTGTGTATCCAGTTGGAAGTGAGCTACTCGGAGCTACGCTGCGTGAAAGGGCAAGCCGAT 60 consensus_3804#1 ------------------------------------------------------------ consensus_3804#0 CCGATGATAGCACGAAAACGCGTTTAAAGGCGGTTTAGGTTAAAAACAGGGGGAGAAAGA 120 consensus_3804#1 ------------------------------------------------------------ consensus_3804#0 GGGTGTTCTACATACAAACAAATATTACAGTATGCCTGTCTGGTTCGATAATTACAACTA 180 consensus_3804#1 ------------------------------------------------------------ consensus_3804#0 GGCTCAAAAATTTGATATTTTCCCACCCCGAATGATAATAGTTTTT-ATCAAAATCGTTC 239 consensus_3804#1 -GCCCCGAATGTAAACACACACACACAACGG--GGTAATAGTTTTTTATCAAAATCGTTC 57 ** * ** * * * * *** ** * *********** ************* consensus_3804#0 AATATTGATAACCACAACAATACTCACGATCATAGTTAGCACACTGTATTCTCTGTATTC 299 consensus_3804#1 AATATTGATAGCCACAACAATACTCACGATCATAGTTAGCACATTGTATTCTCTGTATTC 117 ********** ******************************** **************** consensus_3804#0 GCGTGTGTTTGTGTGTGACAGCACCTTCATAATACAAATCCTTTCGC-CTTTAACTGCCA 358 consensus_3804#1 GCGTGTGTATATGTGTGACAGCACCTTCATAATACAAATCCTTTCGCGCTTTAGCTGCCA 177 ******** * ************************************ ***** ****** consensus_3804#0 TACACAACGGGTATTCTGGTTCGATTTCTAAGCTTTCTTTTACACAACTTCCTGTTCCTG 418 consensus_3804#1 TACACAACGGATATTCTGGTTCGATTTCTAAGCTTTCTTTTACACGACTTCCTGTTCCTG 237 ********** ********************************** ************** consensus_3804#0 TTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTC 478 consensus_3804#1 TTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTC 297 ************************************************************ consensus_3804#0 ACGTGTCTAATAGGAGACAAAATGTGTTCCCCTGCCAAAAAAGGGATATACAAGCACGGC 538 consensus_3804#1 GCCTGCGGACGCGTGGGCGG---------------------------------------- 317 * ** * * * * consensus_3804#0 GCACCACGCGTATAATATACCCAAAACATACAAGGGGGGGG 579 consensus_3804#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||