cluster # 3807

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Anopheles gambiae
cluster # 3807 cluster # 3807 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3807#0 length = 771 sequences # 1

consensus_3807#1 length = 603 sequences # 2

consensusID : consensus_3807#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 771
fasta sequence

                              [CAGAATCGCCCAGGTNTTCAAATGTGTAAGATATTGCGCACAAAAACAAACACAGCTTCACTCTAAATATCCCAGTCACGGCACCAACTTCCCCGCGACAGTAGATTTACAAATTACTAACTTTCCAAGTACGACAACAAACTCCGTCACACAATTGTGACATACATTCATAATTAGCCGGCCACTCCTCAGCGGCTTATTATTAGCCGCACCACCCGTTCCGCACCCGCTGCTGGGCAATTCTGGAAGCAATTGCGCTTTTTTTTATCACGCTCGTTGTTTCCTCAAGCGGAGAGATTTAATTGCACAGACACACACTAGTCGTACTCGTCGGCTGTGGGAGTGTATGTGTGGGTTGGATAATGCTTTGTTGGATTAGGAGTGCATCTACTCATTTCCGAATGAGTGTTATATGCCTTTACTATGAAGTATATTTACTTCAAATGTGCAATTGTTTACTAGTTTGCGTAACAAGAACAAATCTTTCGGTGTTATTGCTTCCCTTTTTAATTAGAATCAATTGGAGAATTTTCTTTTAACAATTCAAAACTACAGTAGAACGGACCCTTTTGGCCCTTCTGTNTATGTGTTTCACACAACAAAAATCCCAACCGCGCAATGCCTTTATCTTAGTATAATCTTATCAGTTACGGGAGTAACCGGGCTCGCGTGCGCTTAGTCGCGCTTAGTAGTGGTGTGGTCCGTGGTGCTCTAACACTAAAACGCAGAAACATAGTTTTATCCGATTCGAACCCTTTATTCGACGCGAAA]

[+] EMBL AL934805             [CAGAATCGCCCAGGTNTTCAAATGTGTAAGATATTGCGCACAAAAACAAACACAGCTTCACTCTAAATATCCCAGTCACGGCACCAACTTCCCCGCGACAGTAGATTTACAAATTACTAACTTTCCAAGTACGACAACAAACTCCGTCACACAATTGTGACATACATTCATAATTAGCCGGCCACTCCTCAGCGGCTTATTATTAGCCGCACCACCCGTTCCGCACCCGCTGCTGGGCAATTCTGGAAGCAATTGCGCTTTTTTTTATCACGCTCGTTGTTTCCTCAAGCGGAGAGATTTAATTGCACAGACACACACTAGTCGTACTCGTCGGCTGTGGGAGTGTATGTGTGGGTTGGATAATGCTTTGTTGGATTAGGAGTGCATCTACTCATTTCCGAATGAGTGTTATATGCCTTTACTATGAAGTATATTTACTTCAAATGTGCAATTGTTTACTAGTTTGCGTAACAAGAACAAATCTTTCGGTGTTATTGCTTCCCTTTTTAATTAGAATCAATTGGAGAATTTTCTTTTAACAATTCAAAACTACAGTAGAACGGACCCTTTTGGCCCTTCTGTNTATGTGTTTCACACAACAAAAATCCCAACCGCGCAATGCCTTTATCTTAGTATAATCTTATCAGTTACGGGAGTAACCGGGCTCGCGTGCGCTTAGTCGCGCTTAGTAGTGGTGTGGTCCGTGGTGCTCTAACACTAAAACGCAGAAACATAGTTTTATCCGATTCGAACCCTTTATTCGACGCGAAA]




>consensus_3807#0
CAGAATCGCCCAGGTNTTCAAATGTGTAAGATATTGCGCACAAAAACAAACACAGCTTCA
CTCTAAATATCCCAGTCACGGCACCAACTTCCCCGCGACAGTAGATTTACAAATTACTAA
CTTTCCAAGTACGACAACAAACTCCGTCACACAATTGTGACATACATTCATAATTAGCCG
GCCACTCCTCAGCGGCTTATTATTAGCCGCACCACCCGTTCCGCACCCGCTGCTGGGCAA
TTCTGGAAGCAATTGCGCTTTTTTTTATCACGCTCGTTGTTTCCTCAAGCGGAGAGATTT
AATTGCACAGACACACACTAGTCGTACTCGTCGGCTGTGGGAGTGTATGTGTGGGTTGGA
TAATGCTTTGTTGGATTAGGAGTGCATCTACTCATTTCCGAATGAGTGTTATATGCCTTT
ACTATGAAGTATATTTACTTCAAATGTGCAATTGTTTACTAGTTTGCGTAACAAGAACAA
ATCTTTCGGTGTTATTGCTTCCCTTTTTAATTAGAATCAATTGGAGAATTTTCTTTTAAC
AATTCAAAACTACAGTAGAACGGACCCTTTTGGCCCTTCTGTNTATGTGTTTCACACAAC
AAAAATCCCAACCGCGCAATGCCTTTATCTTAGTATAATCTTATCAGTTACGGGAGTAAC
CGGGCTCGCGTGCGCTTAGTCGCGCTTAGTAGTGGTGTGGTCCGTGGTGCTCTAACACTA
AAACGCAGAAACATAGTTTTATCCGATTCGAACCCTTTATTCGACGCGAAA

consensusID : consensus_3807#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 603
fasta sequence

                              [CCCGAGGTTTAACGGGCGTATTGAACAAAACCGCACACACACATACATACACACTTTTTGCTCAAGCGCGCGTAGAGAATA-ATTAGAGAGAGAGTGAGAGAACGAGAGAGAAAAGGGGTATCTTGACAATAAGATACAAGTGACAGGGAAGAGACAATAAGGCTTTTAGACCGTAAGATCGTTCGCGCACGTAGTTTAGACTCGCGCACTGCCCGTATTGCTAGAAATATGCACACTCTGTAAGGCTTTACGCGACTAGCCGCGCTCTCTTAGAGGTAAAGTGCAAACGAGAGCTACATTTGGCTCTGTTCTCTACTGAATTAGCTAGCTTTACAGTTTCGAACGCGAATGTGTAAGATATTGCGCACAAAAACAAACACAGCTTCACTCTAAATATCCCAGTCACGG-ACCAAATTCCCCGGGACAGTAAATTTACAAATTACTAACTTTCCGAGTACGACAACAAACTCCGTCACACAAA-AGGAGCGCGATCTAGCGTTGCTAACATACATTCATAATTAGCCGA-CACTCCAGCGGACTTATT-ATTAG-CG-GCCACCGTTCCGCA-CCGTTGCATGGGCAATTCTGG-AAGCAATTGCGCTTTAT]

[+] EMBL AL697355             [CCCGAGGTTTAACGGGCGTATTGAACAAAACCGCACACACACATACATACACACTTTTTGCTCAAGCGCGCGTAGAGAATA ATTAGAGAGAGAGTGAGAGAACGAGAGAGAAAAGGGGTATCTTGACAATAAGATACAAGTGACAGGGAAGAGACAATAAGGCTTTTAGACCGTAAGATCGTTCGCGCACGTAGTTTAGACTCGCGCACTGCCCGTATTGCTAGAAATATGCACACTCTGTAAGGCTTTACGCGACTAGCCGCGCTCTCTTAGAGGTAAAGTGCAAACGAGAGCTACATTTGGCTCTGTTCTCTACTGAATTAGCTAGCTTTACAGTTTCGAACGCGAATGTGTAAGATATTGCGCACAAAAACAAACACAGCTTCACTCTAAATATCCCAGTCACGG ACCAAATTCCCCGGGACAGTAAATTTACAAATTACTAACTTTCCGAGTACGACAACAAACTCCGTCACACAAA AGGAGCGCGATCTAGCGTTGCTAACATACATTCATAATTAGCCGA CACTCCAGCGGACTTATT ATTAG CG GCCACCGTTCCGCA CCGTTGCATGGGCAATTCTGG AAGCAA           ]
[+] EMBL AL694334             [                                                                  gatcccccGAGGTTATATTAGAGAGAGAGTGAGAGAACGAGAGAGAAAAGGGGTATCTTGACAATAAGATACAAGTGACAGGGAAGAGACAATAAGGCTTTTAGACCGTAAGATCGTTCGCGCACGTAGTTTAGACTCGCGCACTGCCCGTATTGCTAGAAATATGCACACTCTGTAAGGCTTTACGCGACTAGCCGCGCTCTCTTAGAGGTAAAGTGCAAACGAGAGCTACATTTGGCTCTGTTCTCTACTGAATTAGCTAGCTTTACAGTTTCGAACGCGAATGTGTANGATATTGCGCACAAAAACAAACACAGCTTCACTCTAAATATCCCAGTCACGGCACCAAATTCCCCGGGACAGTAAATTTACAAATTACTAACTTTCCGAGTACGACAACAAACTCCGTCACACAAACAGGAGCGCGATCTAGCGTTGCTAACATACATTCATAATTAGCCGACCACTCCAGCGG CTTATTCATTAGCCGCGCCACCGTTCCGCACCCGCTGC TGGGCAATTCTGGCAAGCAATTGCGCTTTAT]




>consensus_3807#1
CCCGAGGTTTAACGGGCGTATTGAACAAAACCGCACACACACATACATACACACTTTTTG
CTCAAGCGCGCGTAGAGAATAATTAGAGAGAGAGTGAGAGAACGAGAGAGAAAAGGGGTA
TCTTGACAATAAGATACAAGTGACAGGGAAGAGACAATAAGGCTTTTAGACCGTAAGATC
GTTCGCGCACGTAGTTTAGACTCGCGCACTGCCCGTATTGCTAGAAATATGCACACTCTG
TAAGGCTTTACGCGACTAGCCGCGCTCTCTTAGAGGTAAAGTGCAAACGAGAGCTACATT
TGGCTCTGTTCTCTACTGAATTAGCTAGCTTTACAGTTTCGAACGCGAATGTGTAAGATA
TTGCGCACAAAAACAAACACAGCTTCACTCTAAATATCCCAGTCACGGACCAAATTCCCC
GGGACAGTAAATTTACAAATTACTAACTTTCCGAGTACGACAACAAACTCCGTCACACAA
AAGGAGCGCGATCTAGCGTTGCTAACATACATTCATAATTAGCCGACACTCCAGCGGACT
TATTATTAGCGGCCACCGTTCCGCACCGTTGCATGGGCAATTCTGGAAGCAATTGCGCTT
TAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3807#0      --CAGAATCGCCCAGGTNTTCAAATGTGTAAGATATTGCGCACAAAAACAAACACAGCTT 58
consensus_3807#1      CCCGAGGTTTAACGGGCGT---ATTGAACAAAACCGCACACACACATACATACACACTTT 57
                        *    *    * **  *   * **   ** *     * **** * *** *****  **

consensus_3807#0      CACTCTAAATATCCCAGTCACGGCACCAACTTCCCCGCGACAGTAGATTTACAAATTACT 118
consensus_3807#1      TTGCTCAAGCGCGCGTA----GAGAATAATTAG--AGAGAGAGTGAGAGAACGAGAGAGA 111
                            **     *       *  *  ** *     * ** ***      ** *   *  

consensus_3807#0      AACTTTCCAAGTACGACAACAAACTCCGTCACACAATTGTGACATACATTCATAATTAGC 178
consensus_3807#1      AAAGGGGTATCT-TGACAATAAGATACAAGTGACAGGGAAGAGACAATAAGGCTTTTAGA 170
                      **      *  *  ***** **  * *     ***     ** * *         **** 

consensus_3807#0      CGGCCACTCCTCAGCGGCTTATTATTAGCCGCACCACCCGTTCCGCACCCGCTGCTGGGC 238
consensus_3807#1      CCGTAAGA--TCGTTCGCGCACG--TAGTTTAGACTCGCGCACTGCCCGTATTGCTAGAA 226
                      * *  *    **    **  *    ***      * * **  * ** *    **** *  

consensus_3807#0      AATTCTGGAAGCAATTGCGCTTTTTTTTATCACGCTCGTTGTTTCCTCAAGCGGAGAGAT 298
consensus_3807#1      ATATGCACACTCTGTAAGGCTTTACGCGACTAGCCGCGCTCTCTT----AGAGGTAAAGT 282
                      *  *    *  *  *   *****     *  *  * ** * * *     ** **  *  *

consensus_3807#0      TTAATTGCACAGACACACACTAGTCGTACTCGTCGGCTGTGGGAG-TGTATGTGTGGGTT 357
consensus_3807#1      GCAAACG---AGAGCTACATTTGGCTCTGTTCTCTACTGAATTAGCTAGCTTTACAGTTT 339
                        **  *   ***   *** * * *    *  **  ***    ** *   * *   * **

consensus_3807#0      GGATAATGCTT-TGTTGGATTAGGAGTGCATCTACTCATTTCCGAATGAGTGTTATATGC 416
consensus_3807#1      CGAACGCGAATGTGTAAGAT--ATTGCGCACAAAAACAAACACAGCTTCACTCTAAATAT 397
                       **    *  * ***  ***     * ***   *  **    *   *      ** **  

consensus_3807#0      CTTTACTATGAAGTATATTTACTTCAAATGTGCAATTGT---TTACTAGTTTGCGTA--A 471
consensus_3807#1      CCCAGTCACGGACCAAATTCCCCGGGACAGTAAATTTACAAATTACTAACTTTCCGAGTA 457
                      *      * * *  * ***  *    *  **  * **     ******  ** *  *  *

consensus_3807#0      CAAGAACAAATCTTTCGGTGTTATTGCTTCCCTTTTTAATTAGAATCAATTGGAGAATTT 531
consensus_3807#1      CGACAACAAACTCCGTCACACAAAAGGAGCGCGATCTAG-------CGTTGCTAACATAC 510
                      * * ******            *  *   * *  * **        *  *   *  **  

consensus_3807#0      TCTTTTAACAATTCAAAACTACAGTAGAACGGACCCTTTTGGCCCTTCTGTNTATGTGTT 591
consensus_3807#1      ATTCATAATTAGCCGACACTCCAGCGGACTTATTATTAGCGGCCACCGTTCCGCACCGTT 570
                        *  ***  *  * * *** ***  **        *   ****    *        ***

consensus_3807#0      TCACACAACAAAAATCCCAACCGCGCAATGC-CTTTATCTTAGTATAATCTTATCAGTTA 650
consensus_3807#1      GCATG----GGCAATTCTGGAAGCA-ATTGCGCTTTAT---------------------- 603
                       **         *** *     **  * *** ******                      

consensus_3807#0      CGGGAGTAACCGGGCTCGCGTGCGCTTAGTCGCGCTTAGTAGTGGTGTGGTCCGTGGTGC 710
consensus_3807#1      ------------------------------------------------------------
                                                                                  

consensus_3807#0      TCTAACACTAAAACGCAGAAACATAGTTTTATCCGATTCGAACCCTTTATTCGACGCGAA 770
consensus_3807#1      ------------------------------------------------------------
                                                                                  

consensus_3807#0      A 771
consensus_3807#1      -