cluster # 3814

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Anopheles gambiae
cluster # 3814 cluster # 3814 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3814#0 length = 638 sequences # 1

consensus_3814#1 length = 554 sequences # 2

consensusID : consensus_3814#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGTCCTCATCCCGTCGCTGGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGTTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTAGAAAAAAGGAATCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTTGGATGCGTGTCGTCCGGGGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTACCAAGTGTGTGTGTGTGTGTTTTTGCGTGTGTGGATGATTGTTTTTAATTTAGCAACGACGGCAAAAACAGCAGCTCCTCCTCGCAGCCGGGGGCAACCAGACAGCAGCAACCAACAATAACAGAGCAACACCATCATCATCATCATCATCACAGAGACATGGCTGACCAGAACGAGAAAATTCTTCATCGCCTGCTGCAACAGGACGGGAACAGCATTTGTGCGGATTGTGATTCGAAAAATCTAGAATGGGCCTCATACAACATCGGCATCTTCCTGTGCACCCGGTGCTGTGCGGTCCATCGCAGCATGGGTGCGCACATATCGAAAGTGAAGCATCTCAAGCTGGACAAATGG]

[+] EMBL BM604226             [CCGCCCACGCGTCCGCCCACGCGTCCGGGTCCTCATCCCGTCGCTGGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGTTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTAGAAAAAAGGAATCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTTGGATGCGTGTCGTCCGGGGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTACCAAGTGTGTGTGTGTGTGTTTTTGCGTGTGTGGATGATTGTTTTTAATTTAGCAACGACGGCAAAAACAGCAGCTCCTCCTCGCAGCCGGGGGCAACCAGACAGCAGCAACCAACAATAACAGAGCAACACCATCATCATCATCATCATCACAGAGACATGGCTGACCAGAACGAGAAAATTCTTCATCGCCTGCTGCAACAGGACGGGAACAGCATTTGTGCGGATTGTGATTCGAAAAATCTAGAATGGGCCTCATACAACATCGGCATCTTCCTGTGCACCCGGTGCTGTGCGGTCCATCGCAGCATGGGTGCGCACATATCGAAAGTGAAGCATCTCAAGCTGGACAAATGG]




>consensus_3814#0
CCGCCCACGCGTCCGCCCACGCGTCCGGGTCCTCATCCCGTCGCTGGTCGTGGTGGTGGT
TTCGTGAAGAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGTTACGAAAAGGGTGTG
TGAATAGTAAAGTCTGGTGTTGCGACGCATTAGAAAAAAGGAATCAGAAAGTGAAAGAAA
AGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTTGGATGCGTGTCGTCCGG
GGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTACCAAGTGTGTGTGTGTGTG
TTTTTGCGTGTGTGGATGATTGTTTTTAATTTAGCAACGACGGCAAAAACAGCAGCTCCT
CCTCGCAGCCGGGGGCAACCAGACAGCAGCAACCAACAATAACAGAGCAACACCATCATC
ATCATCATCATCACAGAGACATGGCTGACCAGAACGAGAAAATTCTTCATCGCCTGCTGC
AACAGGACGGGAACAGCATTTGTGCGGATTGTGATTCGAAAAATCTAGAATGGGCCTCAT
ACAACATCGGCATCTTCCTGTGCACCCGGTGCTGTGCGGTCCATCGCAGCATGGGTGCGC
ACATATCGAAAGTGAAGCATCTCAAGCTGGACAAATGG

consensusID : consensus_3814#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 554
fasta sequence

                              [CCGAGAAAATGCGCGTAAATAATAAATCGCTCTGATATTTGTGCAACTTTCGACTCAATTTAGCCACGCCAAACGCAAGTGAACCTGATTTTCGTCAAGCACTTCACCACCAGACAGTGTGTACGCAAGCGAGTGTAAAGAACGTTCGCCCCAAAAATGCATAAAAAATGGCGCCGCACCAGTTTGGTCGCCCGTGAAGAATTTGTTATTGTGAACAACCAACTCCCCCCACTGCAGCGATAGTGTGTGCCGTCGTGGTCG---GTCGTCGTCGTCGTGGTCGTGGTCGTCATCCCGTCGCTGGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGTTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTATAAAAAAAGGAATCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTTGGATGCGTGTCGTCCGGGGGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTACCAAGTGTGTGTCTGT]

[+] EMBL BM614075             [CCGAGAAAATGCGCGTAAATAATAAATCGCTCTGATATTTGTGCAACTTTCGACTCAATTTAGCCACGCCAAACGCAAGTGAACCTGATTTTCGTCAAGCACTTCACCACCAGACAGTGTGTACGCAAGCGAGTGTAAAGAACGTTCGCCCCAAAAATGCATAAAAAATGGCGCCGCACCAGTTTGGTCGCCCGTGAAGAATTTGTTATTGTGAACAACCAACTCCCCCCACTGCAGCGATAGTGTGTGCCGTCGTGGTCG   GTCGTCGTCGTCGTGGTCGTGGTCGTCATCCCGTCGCTGGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGTTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTATAAAAAAAGGAATCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTTGGATGCGTGTCGTCCGGGGGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTACCAAGTGTGTGTCTGT]
[+] EMBL BM617784             [                      ccgATCGCTCTGAAATTTGTGCAACTTTCGACTCAATTTAGCCACGCCAAACGCAGGTGAACCTGATTTTCGTCAAGCGCTTCACCACCACGCAGTGTGTACGCAAGCGAGTGTAAAGAACGTTCGCCCCGAAAATGCATAAAAAATGGCGCCGCACCAGTTTGGCCGCCCGTGAAGAATTTGTTATTGCGAACAACCAACTCCCCCCACTGCAGCGATAGTGTGTGCCGTCGTGGTCGGTCGTCGTCGTCGTCGTGGTCGTGGTCCTCATCCCGTCGCTGGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGTTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATT                                                                                                                                                    ]




>consensus_3814#1
CCGAGAAAATGCGCGTAAATAATAAATCGCTCTGATATTTGTGCAACTTTCGACTCAATT
TAGCCACGCCAAACGCAAGTGAACCTGATTTTCGTCAAGCACTTCACCACCAGACAGTGT
GTACGCAAGCGAGTGTAAAGAACGTTCGCCCCAAAAATGCATAAAAAATGGCGCCGCACC
AGTTTGGTCGCCCGTGAAGAATTTGTTATTGTGAACAACCAACTCCCCCCACTGCAGCGA
TAGTGTGTGCCGTCGTGGTCGGTCGTCGTCGTCGTGGTCGTGGTCGTCATCCCGTCGCTG
GTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGT
TACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTATAAAAAAAGGAAT
CAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTTG
GATGCGTGTCGTCCGGGGGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTACC
AAGTGTGTGTCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3814#0      ------------------------------------------------------------
consensus_3814#1      CCGAGAAAATGCGCGTAAATAATAAATCGCTCTGATATTTGTGCAACTTTCGACTCAATT 60
                                                                                  

consensus_3814#0      ------------------------------------------------------------
consensus_3814#1      TAGCCACGCCAAACGCAAGTGAACCTGATTTTCGTCAAGCACTTCACCACCAGACAGTGT 120
                                                                                  

consensus_3814#0      ------------------------------------------------------------
consensus_3814#1      GTACGCAAGCGAGTGTAAAGAACGTTCGCCCCAAAAATGCATAAAAAATGGCGCCGCACC 180
                                                                                  

consensus_3814#0      ------------------------------------------------------------
consensus_3814#1      AGTTTGGTCGCCCGTGAAGAATTTGTTATTGTGAACAACCAACTCCCCCCACTGCAGCGA 240
                                                                                  

consensus_3814#0      --------------CCGCCCACGCGTCCGCCCACGCGTCCG-GGTCCTCATCCCGTCGCT 45
consensus_3814#1      TAGTGTGTGCCGTCGTGGTCGGTCGTC-GTCGTCGTGGTCGTGGTCGTCATCCCGTCGCT 299
                                      *  *   **** * *  ** *  ** **** *************

consensus_3814#0      GGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAA-TAAGTTGGAATTTCCAGCCACAGTG 104
consensus_3814#1      GGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTG 359
                      ********************************** *************************

consensus_3814#0      TTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTA-GAAAAAAGGAA 163
consensus_3814#1      TTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTATAAAAAAAGGAA 419
                      ************************************************  **********

consensus_3814#0      TCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTT 223
consensus_3814#1      TCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTT 479
                      ************************************************************

consensus_3814#0      GGATGCGTGTCGTCCGGGG-CACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTAC 282
consensus_3814#1      GGATGCGTGTCGTCCGGGGGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTAC 539
                      ******************* ****************************************

consensus_3814#0      CAAGTGTGTGTGTGTGTGTTTTTGCGTGTGTGGATGATTGTTTTTAATTTAGCAACGACG 342
consensus_3814#1      CAAGTGTGTGTCTGT--------------------------------------------- 554
                      *********** ***                                             

consensus_3814#0      GCAAAAACAGCAGCTCCTCCTCGCAGCCGGGGGCAACCAGACAGCAGCAACCAACAATAA 402
consensus_3814#1      ------------------------------------------------------------
                                                                                  

consensus_3814#0      CAGAGCAACACCATCATCATCATCATCATCACAGAGACATGGCTGACCAGAACGAGAAAA 462
consensus_3814#1      ------------------------------------------------------------
                                                                                  

consensus_3814#0      TTCTTCATCGCCTGCTGCAACAGGACGGGAACAGCATTTGTGCGGATTGTGATTCGAAAA 522
consensus_3814#1      ------------------------------------------------------------
                                                                                  

consensus_3814#0      ATCTAGAATGGGCCTCATACAACATCGGCATCTTCCTGTGCACCCGGTGCTGTGCGGTCC 582
consensus_3814#1      ------------------------------------------------------------
                                                                                  

consensus_3814#0      ATCGCAGCATGGGTGCGCACATATCGAAAGTGAAGCATCTCAAGCTGGACAAATGG 638
consensus_3814#1      --------------------------------------------------------