These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3823#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 973 fasta sequence [ATCCCCCGAGGTTAGAACAGAAAAAAAAAACGATACAGATGCAGGAAGGAAACACGTATAGGAAAATTAACCCTACTACTACCATAATCCAATGATAGACAATATTTTCTGCAAAACCTTTCAAAGCACATCCTTCTTCGTCCTCTACCAAAACTTAAGCAGAGAAGGTGGAGGCAGAAAAAAACACTCGTTTGTAAGATAGAGCATTATATATACATATATGAAACCGCCGAATCGCCCTCGTGAATTCCAAAACCTCCTGTAGTAAACCTTTTAACACCACTTGTCACCCTCATATGATCACGATCCTCATGATCCTCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGCGCACAGTTTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACATACATACATACGCCCAAGCATAAGTAAAACAAATACAACAAAACAAATCAACCGGAGAACAGGTTAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTNATG-TAGGCGTGATCACTTCCACACGTTACTCGTCGTCAGCTAGTGTAATACCGTTATATTCCTTACTTATNTATCTGTTTTAGTAAACCAAACAAACCTAGACAAAACAANNAGAAAGAAAACAAAGTAACAAATTATTAAGAACGATTAAAGGCAGAGCACAACGCGAGATAGTTGTGCTACTAGTGGTCGGTGTGTTTCAATCGCGTTCTCAAAACCGTCTTAACGTCGCGTCGCGGTATAGTATCACACCTACATGCGATTACCGTTTGCTCCGTTTGCTTACACCGCCGTCAAGGGGGTTACGGAAGAAGGCAAAGAAGGCAAAGATGTGTTGGGTTGTTTAGATTTGATTTCTATATTCGGAAACGAAGCAGTACAATTACATGTTCTGCAAGTTTGTAGAGCATACAAATTAATGAAAGTATAATTGAAGGAAGGA] [+] EMBL AL694532 [ATCCCCCGAGGTTAGAACAGAAAAAAAAAACGATACAGATGCAGGAAGGAAACACGTATAGGAAAATTAACCCTACTACTACCATAATCCAATGATAGACAATATTTTCTGCAAAACCTTTCAAAGCACATCCTTCTTCGTCCTCTACCAAAACTTAAGCAGAGAAGGTGGAGGCAGAAAAAAACACTCGTTTGTAAGATAGAGCATTATATATACATATATGAAACCGCCGAATCGCCCTCGTGAATTCCAAAACCTCCTGTAGTAAACCTTTTAACACCACTTGTCACCCTCATATGATCACGATCCTCATGATCCTCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGCGCACAGTTTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACATACATACATACGCCCAAGCATAAGTAAAACAAATACAACAAAACAAATCAACCGGAGAACAGGTTAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTNATG TAGGCGTGATCACTTCCACACGTTACTCGTCGTCAGCTAGTGTAATACCGTTATATTCCTTACTTATNTATCTGTTTTAGTAAACCAAACAAACCTAGACAAAACAANNAGAAAGAAAACA ] [+] EMBL BM591969 [ CCGCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGCGCACAG TTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACATACATACATACGCCCAAGCATAAGTAAAACAAATAAAACAAAACAAATCAACCGGAGAACAGGTTAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTTATGTTTGGCGTGATCACTTCCACACGTT CTCGTCGTCAGCTAGTGTAATACCGTT TATTCCTTACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGAC AAACAA AAGAAAGAAAACAAAGTAACAAATTATTAAGAACGATTAAAGGCAGAGCACAACGCGAGATAGTTGTGCTACTAGTGGTCGGTGTGTTTCAATCGCGTTCTCAAAACCGTCTTAACGTCGCGTCGCGGTATAGTATCACACCTACATGCGATTACCGTTTGCTCCGTTTGCTTACACCGCCGTCAAGGGGGTTACGGAAGAAGGCAAAGAAGGCAAAGATGTGTTGGGTTGTTTAGATTTGATTTCTATATTCGGAAACGAAGCAGTACAATTACATGTTCTGCAAGTTTGTAGAGCATACAAATTAATGAAAGTATAATTGAAGGAAGGA] consensusID : consensus_3823#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [ATCGCCCCGAGGTTTGTCAGCTAGTGTATACCGGNTATTCCTTACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGNACAAACNCAACAGAAAGAAAACAAAGTAACCAATTATTAAGAACTGATTAAAGGNAGAGCACAACGCGAGATAGTTGTGCTACTAATGNGTCGGTGTGTTTCAATCGCGTTCTCAAAACGTCTTAACGTCGCGTCNGCGGGATAGTATCACACCTACATGCGATTACCGTTTGCGTCCGTTTGCTTACACCGCCGTCNCAGGGCGTGTTACGTNGACAGAAAGGGGCACACACGACACGTGGCAAAAGANTGGTTGTCTCTGNGGTCTCTGTCTCTACCGACTNTTTNGGATTTCTACTACTTTCCGGACAANCGACAGCACGTACAATCTACACTTGGTTACTTGGCACACGTTTNGGTACGCACGGCACTTAACACAAAATTTAAANTTGACACANAGTTACTTACACTTCTGGACAGGGCAACAGGTGCACACACAAGGCACAGCACGCACACAAACACAACGCAGCCCACACCAACACACCAACCAGNACATTGTTGGACCACCACAATAGGTCTAAGCACATCAAGTGCATTGGACACATCCACATCTGGTTGGTTTGCACAACCNACATGTATCACACAGCCCCA] [+] EMBL AL930022 [ATCGCCCCGAGGTTTGTCAGCTAGTGTATACCGGNTATTCCTTACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGNACAAACNCAACAGAAAGAAAACAAAGTAACCAATTATTAAGAACTGATTAAAGGNAGAGCACAACGCGAGATAGTTGTGCTACTAATGNGTCGGTGTGTTTCAATCGCGTTCTCAAAACGTCTTAACGTCGCGTCNGCGGGATAGTATCACACCTACATGCGATTACCGTTTGCGTCCGTTTGCTTACACCGCCGTCNCAGGGCGTGTTACGTNGACAGAAAGGGGCACACACGACACGTGGCAAAAGANTGGTTGTCTCTGNGGTCTCTGTCTCTACCGACTNTTTNGGATTTCTACTACTTTCCGGACAANCGACAGCACGTACAATCTACACTTGGTTACTTGGCACACGTTTNGGTACGCACGGCACTTAACACAAAATTTAAANTTGACACANAGTTACTTACACTTCTGGACAGGGCAACAGGTGCACACACAAGGCACAGCACGCACACAAACACAACGCAGCCCACACCAACACACCAACCAGNACATTGTTGGACCACCACAATAGGTCTAAGCACATCAAGTGCATTGGACACATCCACATCTGGTTGGTTTGCACAACCNACATGTATCACACAGCCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3823#0 ATCCCCCGAGGTTAGAACAGAAAAAAAAAACGATACAGATGCAGGAAGGAAACACGTATA 60 consensus_3823#1 ------------------------------------------------------------ consensus_3823#0 GGAAAATTAACCCTACTACTACCATAATCCAATGATAGACAATATTTTCTGCAAAACCTT 120 consensus_3823#1 -----------------ATCGCCCCGAGGTT-TGTCAGCTAGTGTATACCGGNTATTCCT 42 * ** * ** ** * * * * * * * * * consensus_3823#0 TCAAAGCACATCCTTCTTCGTCCTCTACCAAAACTTAAG-CAGAGAAGGTGGAGGCAGAA 179 consensus_3823#1 TACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGNACAAACNCAACAGAAAGAAAA 102 * * *** * ** ** * * **** ** ** * ** * ** consensus_3823#0 AAAAACACTCGTTTGTAAGATAGAGCATTATATATACATATATGAAACCGCCGAATCGCC 239 consensus_3823#1 CAAAGTAACCAATTATTA-----AGAACTGATTAAAGGNAGAGCACAACGCGAGATAGTT 157 *** * * ** * * ** * * ** * * * * * *** ** * consensus_3823#0 CTCGTGAATTCCAAAACCTCCTGTAGTAAACCTTTTAACACCACTTGTCACCCTCATATG 299 consensus_3823#1 GT-GCTACTAATGNGTCGGTGTGTTTCAATCGCGTTCTCAAAACGTCTTAACGTCGCGTC 216 * * * * * *** ** * ** ** ** * * * * ** * consensus_3823#0 ATCACGATCCTCATGATCCTCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGC 359 consensus_3823#1 NGCGGGATAGT-----------ATCACACCTACA--TGCGATTACCGTTTGCGTCCGTTT 263 * *** * * **** ** * * ** ** * * ** * consensus_3823#0 GCACAGTTTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACA 419 consensus_3823#1 GC-----TTAC--ACCGCCGTCNCAGGGCGTGT-----TACGTNGACAGAAAGGGGCACA 311 ** **** **** * * * * ** * * **** *** consensus_3823#0 TAC-ATACATACGCCCAAGCATAAGTAAAACAAATACAACAAAACAAATCAACCGGAGAA 478 consensus_3823#1 CACGACACGTG-GCAAAAGANTGGTTGTCTCTGNGGTCTCTGTCTCTACCGACTNTTTNG 370 ** * ** * ** *** * * * * * * ** consensus_3823#0 CAGGT-TAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTNATGTAG 537 consensus_3823#1 GATTTCTACTACTTTCCGGACAANCGACAGCACGTACAATCTACACTTGGT-TACTTGGC 429 * * ** ** ** *** * ** * *** * * ** * * consensus_3823#0 GCGTGATCACTTCCACACGTTACTCGTCGTCAGCTAGTGTAATACCGTTATATTCCTTAC 597 consensus_3823#1 ACACGTTTNGGTACGCACGGCACTTAACACAA---AATTTAAANTTGACACANAG-TTAC 485 * * * * * **** *** * * * * *** * * * **** consensus_3823#0 TTATNTATCTGTTTTAGTAAACCAAACAAACCTAGACAAAACAANNAGAAAGAAAACAAA 657 consensus_3823#1 TTACACTTCTG----GACAGGGCAA-CAGGTGCACACACAAGGCACAGCACGCACACAAA 540 *** **** * *** ** * *** ** ** * * * ***** consensus_3823#0 GTAACAAATTATTAAGAACGATTAAAGGCAGAGCACAACGCGAGATAGTTGTGCTACTAG 717 consensus_3823#1 -CACAACGCAGCCCACACCAACACACCAACCAGNACATTGTTGGAC-----CACCACAAT 594 * * * * * * * ** *** * ** * ** * consensus_3823#0 TGGTCGGTGTGTTTCAATCGCGTTCTCAAAACCGTCTTAACGTCGCGTCGCGGTATAGTA 777 consensus_3823#1 AGGTCTAAGCACATCAAGTGCATT-----GGACACATCCACATCTGGTTGGTTTGCA--- 646 **** * **** ** ** * * ** ** ** * * * consensus_3823#0 TCACACCTACATGCGATTACCGTTTGCTCCGTTTGCTTACACCGCCGTCAAGGGGGTTAC 837 consensus_3823#1 -CA-ACCNACATGT-ATCAC--ACAGCCCCA----------------------------- 672 ** *** ***** ** ** ** ** consensus_3823#0 GGAAGAAGGCAAAGAAGGCAAAGATGTGTTGGGTTGTTTAGATTTGATTTCTATATTCGG 897 consensus_3823#1 ------------------------------------------------------------ consensus_3823#0 AAACGAAGCAGTACAATTACATGTTCTGCAAGTTTGTAGAGCATACAAATTAATGAAAGT 957 consensus_3823#1 ------------------------------------------------------------ consensus_3823#0 ATAATTGAAGGAAGGA 973 consensus_3823#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||