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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3823#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 973 fasta sequence
[ATCCCCCGAGGTTAGAACAGAAAAAAAAAACGATACAGATGCAGGAAGGAAACACGTATAGGAAAATTAACCCTACTACTACCATAATCCAATGATAGACAATATTTTCTGCAAAACCTTTCAAAGCACATCCTTCTTCGTCCTCTACCAAAACTTAAGCAGAGAAGGTGGAGGCAGAAAAAAACACTCGTTTGTAAGATAGAGCATTATATATACATATATGAAACCGCCGAATCGCCCTCGTGAATTCCAAAACCTCCTGTAGTAAACCTTTTAACACCACTTGTCACCCTCATATGATCACGATCCTCATGATCCTCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGCGCACAGTTTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACATACATACATACGCCCAAGCATAAGTAAAACAAATACAACAAAACAAATCAACCGGAGAACAGGTTAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTNATG-TAGGCGTGATCACTTCCACACGTTACTCGTCGTCAGCTAGTGTAATACCGTTATATTCCTTACTTATNTATCTGTTTTAGTAAACCAAACAAACCTAGACAAAACAANNAGAAAGAAAACAAAGTAACAAATTATTAAGAACGATTAAAGGCAGAGCACAACGCGAGATAGTTGTGCTACTAGTGGTCGGTGTGTTTCAATCGCGTTCTCAAAACCGTCTTAACGTCGCGTCGCGGTATAGTATCACACCTACATGCGATTACCGTTTGCTCCGTTTGCTTACACCGCCGTCAAGGGGGTTACGGAAGAAGGCAAAGAAGGCAAAGATGTGTTGGGTTGTTTAGATTTGATTTCTATATTCGGAAACGAAGCAGTACAATTACATGTTCTGCAAGTTTGTAGAGCATACAAATTAATGAAAGTATAATTGAAGGAAGGA]
[+] EMBL AL694532 [ATCCCCCGAGGTTAGAACAGAAAAAAAAAACGATACAGATGCAGGAAGGAAACACGTATAGGAAAATTAACCCTACTACTACCATAATCCAATGATAGACAATATTTTCTGCAAAACCTTTCAAAGCACATCCTTCTTCGTCCTCTACCAAAACTTAAGCAGAGAAGGTGGAGGCAGAAAAAAACACTCGTTTGTAAGATAGAGCATTATATATACATATATGAAACCGCCGAATCGCCCTCGTGAATTCCAAAACCTCCTGTAGTAAACCTTTTAACACCACTTGTCACCCTCATATGATCACGATCCTCATGATCCTCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGCGCACAGTTTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACATACATACATACGCCCAAGCATAAGTAAAACAAATACAACAAAACAAATCAACCGGAGAACAGGTTAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTNATG TAGGCGTGATCACTTCCACACGTTACTCGTCGTCAGCTAGTGTAATACCGTTATATTCCTTACTTATNTATCTGTTTTAGTAAACCAAACAAACCTAGACAAAACAANNAGAAAGAAAACA ]
[+] EMBL BM591969 [ CCGCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGCGCACAG TTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACATACATACATACGCCCAAGCATAAGTAAAACAAATAAAACAAAACAAATCAACCGGAGAACAGGTTAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTTATGTTTGGCGTGATCACTTCCACACGTT CTCGTCGTCAGCTAGTGTAATACCGTT TATTCCTTACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGAC AAACAA AAGAAAGAAAACAAAGTAACAAATTATTAAGAACGATTAAAGGCAGAGCACAACGCGAGATAGTTGTGCTACTAGTGGTCGGTGTGTTTCAATCGCGTTCTCAAAACCGTCTTAACGTCGCGTCGCGGTATAGTATCACACCTACATGCGATTACCGTTTGCTCCGTTTGCTTACACCGCCGTCAAGGGGGTTACGGAAGAAGGCAAAGAAGGCAAAGATGTGTTGGGTTGTTTAGATTTGATTTCTATATTCGGAAACGAAGCAGTACAATTACATGTTCTGCAAGTTTGTAGAGCATACAAATTAATGAAAGTATAATTGAAGGAAGGA]
consensusID : consensus_3823#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[ATCGCCCCGAGGTTTGTCAGCTAGTGTATACCGGNTATTCCTTACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGNACAAACNCAACAGAAAGAAAACAAAGTAACCAATTATTAAGAACTGATTAAAGGNAGAGCACAACGCGAGATAGTTGTGCTACTAATGNGTCGGTGTGTTTCAATCGCGTTCTCAAAACGTCTTAACGTCGCGTCNGCGGGATAGTATCACACCTACATGCGATTACCGTTTGCGTCCGTTTGCTTACACCGCCGTCNCAGGGCGTGTTACGTNGACAGAAAGGGGCACACACGACACGTGGCAAAAGANTGGTTGTCTCTGNGGTCTCTGTCTCTACCGACTNTTTNGGATTTCTACTACTTTCCGGACAANCGACAGCACGTACAATCTACACTTGGTTACTTGGCACACGTTTNGGTACGCACGGCACTTAACACAAAATTTAAANTTGACACANAGTTACTTACACTTCTGGACAGGGCAACAGGTGCACACACAAGGCACAGCACGCACACAAACACAACGCAGCCCACACCAACACACCAACCAGNACATTGTTGGACCACCACAATAGGTCTAAGCACATCAAGTGCATTGGACACATCCACATCTGGTTGGTTTGCACAACCNACATGTATCACACAGCCCCA]
[+] EMBL AL930022 [ATCGCCCCGAGGTTTGTCAGCTAGTGTATACCGGNTATTCCTTACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGNACAAACNCAACAGAAAGAAAACAAAGTAACCAATTATTAAGAACTGATTAAAGGNAGAGCACAACGCGAGATAGTTGTGCTACTAATGNGTCGGTGTGTTTCAATCGCGTTCTCAAAACGTCTTAACGTCGCGTCNGCGGGATAGTATCACACCTACATGCGATTACCGTTTGCGTCCGTTTGCTTACACCGCCGTCNCAGGGCGTGTTACGTNGACAGAAAGGGGCACACACGACACGTGGCAAAAGANTGGTTGTCTCTGNGGTCTCTGTCTCTACCGACTNTTTNGGATTTCTACTACTTTCCGGACAANCGACAGCACGTACAATCTACACTTGGTTACTTGGCACACGTTTNGGTACGCACGGCACTTAACACAAAATTTAAANTTGACACANAGTTACTTACACTTCTGGACAGGGCAACAGGTGCACACACAAGGCACAGCACGCACACAAACACAACGCAGCCCACACCAACACACCAACCAGNACATTGTTGGACCACCACAATAGGTCTAAGCACATCAAGTGCATTGGACACATCCACATCTGGTTGGTTTGCACAACCNACATGTATCACACAGCCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3823#0 ATCCCCCGAGGTTAGAACAGAAAAAAAAAACGATACAGATGCAGGAAGGAAACACGTATA 60
consensus_3823#1 ------------------------------------------------------------
consensus_3823#0 GGAAAATTAACCCTACTACTACCATAATCCAATGATAGACAATATTTTCTGCAAAACCTT 120
consensus_3823#1 -----------------ATCGCCCCGAGGTT-TGTCAGCTAGTGTATACCGGNTATTCCT 42
* ** * ** ** * * * * * * * * *
consensus_3823#0 TCAAAGCACATCCTTCTTCGTCCTCTACCAAAACTTAAG-CAGAGAAGGTGGAGGCAGAA 179
consensus_3823#1 TACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGNACAAACNCAACAGAAAGAAAA 102
* * *** * ** ** * * **** ** ** * ** * **
consensus_3823#0 AAAAACACTCGTTTGTAAGATAGAGCATTATATATACATATATGAAACCGCCGAATCGCC 239
consensus_3823#1 CAAAGTAACCAATTATTA-----AGAACTGATTAAAGGNAGAGCACAACGCGAGATAGTT 157
*** * * ** * * ** * * ** * * * * * *** ** *
consensus_3823#0 CTCGTGAATTCCAAAACCTCCTGTAGTAAACCTTTTAACACCACTTGTCACCCTCATATG 299
consensus_3823#1 GT-GCTACTAATGNGTCGGTGTGTTTCAATCGCGTTCTCAAAACGTCTTAACGTCGCGTC 216
* * * * * *** ** * ** ** ** * * * * ** *
consensus_3823#0 ATCACGATCCTCATGATCCTCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGC 359
consensus_3823#1 NGCGGGATAGT-----------ATCACACCTACA--TGCGATTACCGTTTGCGTCCGTTT 263
* *** * * **** ** * * ** ** * * ** *
consensus_3823#0 GCACAGTTTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACA 419
consensus_3823#1 GC-----TTAC--ACCGCCGTCNCAGGGCGTGT-----TACGTNGACAGAAAGGGGCACA 311
** **** **** * * * * ** * * **** ***
consensus_3823#0 TAC-ATACATACGCCCAAGCATAAGTAAAACAAATACAACAAAACAAATCAACCGGAGAA 478
consensus_3823#1 CACGACACGTG-GCAAAAGANTGGTTGTCTCTGNGGTCTCTGTCTCTACCGACTNTTTNG 370
** * ** * ** *** * * * * * * **
consensus_3823#0 CAGGT-TAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTNATGTAG 537
consensus_3823#1 GATTTCTACTACTTTCCGGACAANCGACAGCACGTACAATCTACACTTGGT-TACTTGGC 429
* * ** ** ** *** * ** * *** * * ** * *
consensus_3823#0 GCGTGATCACTTCCACACGTTACTCGTCGTCAGCTAGTGTAATACCGTTATATTCCTTAC 597
consensus_3823#1 ACACGTTTNGGTACGCACGGCACTTAACACAA---AATTTAAANTTGACACANAG-TTAC 485
* * * * * **** *** * * * * *** * * * ****
consensus_3823#0 TTATNTATCTGTTTTAGTAAACCAAACAAACCTAGACAAAACAANNAGAAAGAAAACAAA 657
consensus_3823#1 TTACACTTCTG----GACAGGGCAA-CAGGTGCACACACAAGGCACAGCACGCACACAAA 540
*** **** * *** ** * *** ** ** * * * *****
consensus_3823#0 GTAACAAATTATTAAGAACGATTAAAGGCAGAGCACAACGCGAGATAGTTGTGCTACTAG 717
consensus_3823#1 -CACAACGCAGCCCACACCAACACACCAACCAGNACATTGTTGGAC-----CACCACAAT 594
* * * * * * * ** *** * ** * ** *
consensus_3823#0 TGGTCGGTGTGTTTCAATCGCGTTCTCAAAACCGTCTTAACGTCGCGTCGCGGTATAGTA 777
consensus_3823#1 AGGTCTAAGCACATCAAGTGCATT-----GGACACATCCACATCTGGTTGGTTTGCA--- 646
**** * **** ** ** * * ** ** ** * * *
consensus_3823#0 TCACACCTACATGCGATTACCGTTTGCTCCGTTTGCTTACACCGCCGTCAAGGGGGTTAC 837
consensus_3823#1 -CA-ACCNACATGT-ATCAC--ACAGCCCCA----------------------------- 672
** *** ***** ** ** ** **
consensus_3823#0 GGAAGAAGGCAAAGAAGGCAAAGATGTGTTGGGTTGTTTAGATTTGATTTCTATATTCGG 897
consensus_3823#1 ------------------------------------------------------------
consensus_3823#0 AAACGAAGCAGTACAATTACATGTTCTGCAAGTTTGTAGAGCATACAAATTAATGAAAGT 957
consensus_3823#1 ------------------------------------------------------------
consensus_3823#0 ATAATTGAAGGAAGGA 973
consensus_3823#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||