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Anopheles gambiae
cluster # 3823 cluster # 3823       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3823#0 length = 973 sequences # 2  
consensus_3823#1 length = 672 sequences # 1  

consensusID : consensus_3823#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 973
fasta sequence
                              [ATCCCCCGAGGTTAGAACAGAAAAAAAAAACGATACAGATGCAGGAAGGAAACACGTATAGGAAAATTAACCCTACTACTACCATAATCCAATGATAGACAATATTTTCTGCAAAACCTTTCAAAGCACATCCTTCTTCGTCCTCTACCAAAACTTAAGCAGAGAAGGTGGAGGCAGAAAAAAACACTCGTTTGTAAGATAGAGCATTATATATACATATATGAAACCGCCGAATCGCCCTCGTGAATTCCAAAACCTCCTGTAGTAAACCTTTTAACACCACTTGTCACCCTCATATGATCACGATCCTCATGATCCTCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGCGCACAGTTTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACATACATACATACGCCCAAGCATAAGTAAAACAAATACAACAAAACAAATCAACCGGAGAACAGGTTAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTNATG-TAGGCGTGATCACTTCCACACGTTACTCGTCGTCAGCTAGTGTAATACCGTTATATTCCTTACTTATNTATCTGTTTTAGTAAACCAAACAAACCTAGACAAAACAANNAGAAAGAAAACAAAGTAACAAATTATTAAGAACGATTAAAGGCAGAGCACAACGCGAGATAGTTGTGCTACTAGTGGTCGGTGTGTTTCAATCGCGTTCTCAAAACCGTCTTAACGTCGCGTCGCGGTATAGTATCACACCTACATGCGATTACCGTTTGCTCCGTTTGCTTACACCGCCGTCAAGGGGGTTACGGAAGAAGGCAAAGAAGGCAAAGATGTGTTGGGTTGTTTAGATTTGATTTCTATATTCGGAAACGAAGCAGTACAATTACATGTTCTGCAAGTTTGTAGAGCATACAAATTAATGAAAGTATAATTGAAGGAAGGA]

[+] EMBL AL694532             [ATCCCCCGAGGTTAGAACAGAAAAAAAAAACGATACAGATGCAGGAAGGAAACACGTATAGGAAAATTAACCCTACTACTACCATAATCCAATGATAGACAATATTTTCTGCAAAACCTTTCAAAGCACATCCTTCTTCGTCCTCTACCAAAACTTAAGCAGAGAAGGTGGAGGCAGAAAAAAACACTCGTTTGTAAGATAGAGCATTATATATACATATATGAAACCGCCGAATCGCCCTCGTGAATTCCAAAACCTCCTGTAGTAAACCTTTTAACACCACTTGTCACCCTCATATGATCACGATCCTCATGATCCTCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGCGCACAGTTTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACATACATACATACGCCCAAGCATAAGTAAAACAAATACAACAAAACAAATCAACCGGAGAACAGGTTAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTNATG TAGGCGTGATCACTTCCACACGTTACTCGTCGTCAGCTAGTGTAATACCGTTATATTCCTTACTTATNTATCTGTTTTAGTAAACCAAACAAACCTAGACAAAACAANNAGAAAGAAAACA                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM591969             [                                                                                                                                                                                                                                                                                                                            CCGCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGCGCACAG TTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACATACATACATACGCCCAAGCATAAGTAAAACAAATAAAACAAAACAAATCAACCGGAGAACAGGTTAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTTATGTTTGGCGTGATCACTTCCACACGTT CTCGTCGTCAGCTAGTGTAATACCGTT TATTCCTTACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGAC AAACAA AAGAAAGAAAACAAAGTAACAAATTATTAAGAACGATTAAAGGCAGAGCACAACGCGAGATAGTTGTGCTACTAGTGGTCGGTGTGTTTCAATCGCGTTCTCAAAACCGTCTTAACGTCGCGTCGCGGTATAGTATCACACCTACATGCGATTACCGTTTGCTCCGTTTGCTTACACCGCCGTCAAGGGGGTTACGGAAGAAGGCAAAGAAGGCAAAGATGTGTTGGGTTGTTTAGATTTGATTTCTATATTCGGAAACGAAGCAGTACAATTACATGTTCTGCAAGTTTGTAGAGCATACAAATTAATGAAAGTATAATTGAAGGAAGGA]


>consensus_3823#0 ATCCCCCGAGGTTAGAACAGAAAAAAAAAACGATACAGATGCAGGAAGGAAACACGTATA GGAAAATTAACCCTACTACTACCATAATCCAATGATAGACAATATTTTCTGCAAAACCTT TCAAAGCACATCCTTCTTCGTCCTCTACCAAAACTTAAGCAGAGAAGGTGGAGGCAGAAA AAAACACTCGTTTGTAAGATAGAGCATTATATATACATATATGAAACCGCCGAATCGCCC TCGTGAATTCCAAAACCTCCTGTAGTAAACCTTTTAACACCACTTGTCACCCTCATATGA TCACGATCCTCATGATCCTCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGCG CACAGTTTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACAT ACATACATACGCCCAAGCATAAGTAAAACAAATACAACAAAACAAATCAACCGGAGAACA GGTTAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTNATGTAGGCG TGATCACTTCCACACGTTACTCGTCGTCAGCTAGTGTAATACCGTTATATTCCTTACTTA TNTATCTGTTTTAGTAAACCAAACAAACCTAGACAAAACAANNAGAAAGAAAACAAAGTA ACAAATTATTAAGAACGATTAAAGGCAGAGCACAACGCGAGATAGTTGTGCTACTAGTGG TCGGTGTGTTTCAATCGCGTTCTCAAAACCGTCTTAACGTCGCGTCGCGGTATAGTATCA CACCTACATGCGATTACCGTTTGCTCCGTTTGCTTACACCGCCGTCAAGGGGGTTACGGA AGAAGGCAAAGAAGGCAAAGATGTGTTGGGTTGTTTAGATTTGATTTCTATATTCGGAAA CGAAGCAGTACAATTACATGTTCTGCAAGTTTGTAGAGCATACAAATTAATGAAAGTATA ATTGAAGGAAGGA



consensusID : consensus_3823#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence
                              [ATCGCCCCGAGGTTTGTCAGCTAGTGTATACCGGNTATTCCTTACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGNACAAACNCAACAGAAAGAAAACAAAGTAACCAATTATTAAGAACTGATTAAAGGNAGAGCACAACGCGAGATAGTTGTGCTACTAATGNGTCGGTGTGTTTCAATCGCGTTCTCAAAACGTCTTAACGTCGCGTCNGCGGGATAGTATCACACCTACATGCGATTACCGTTTGCGTCCGTTTGCTTACACCGCCGTCNCAGGGCGTGTTACGTNGACAGAAAGGGGCACACACGACACGTGGCAAAAGANTGGTTGTCTCTGNGGTCTCTGTCTCTACCGACTNTTTNGGATTTCTACTACTTTCCGGACAANCGACAGCACGTACAATCTACACTTGGTTACTTGGCACACGTTTNGGTACGCACGGCACTTAACACAAAATTTAAANTTGACACANAGTTACTTACACTTCTGGACAGGGCAACAGGTGCACACACAAGGCACAGCACGCACACAAACACAACGCAGCCCACACCAACACACCAACCAGNACATTGTTGGACCACCACAATAGGTCTAAGCACATCAAGTGCATTGGACACATCCACATCTGGTTGGTTTGCACAACCNACATGTATCACACAGCCCCA]

[+] EMBL AL930022             [ATCGCCCCGAGGTTTGTCAGCTAGTGTATACCGGNTATTCCTTACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGNACAAACNCAACAGAAAGAAAACAAAGTAACCAATTATTAAGAACTGATTAAAGGNAGAGCACAACGCGAGATAGTTGTGCTACTAATGNGTCGGTGTGTTTCAATCGCGTTCTCAAAACGTCTTAACGTCGCGTCNGCGGGATAGTATCACACCTACATGCGATTACCGTTTGCGTCCGTTTGCTTACACCGCCGTCNCAGGGCGTGTTACGTNGACAGAAAGGGGCACACACGACACGTGGCAAAAGANTGGTTGTCTCTGNGGTCTCTGTCTCTACCGACTNTTTNGGATTTCTACTACTTTCCGGACAANCGACAGCACGTACAATCTACACTTGGTTACTTGGCACACGTTTNGGTACGCACGGCACTTAACACAAAATTTAAANTTGACACANAGTTACTTACACTTCTGGACAGGGCAACAGGTGCACACACAAGGCACAGCACGCACACAAACACAACGCAGCCCACACCAACACACCAACCAGNACATTGTTGGACCACCACAATAGGTCTAAGCACATCAAGTGCATTGGACACATCCACATCTGGTTGGTTTGCACAACCNACATGTATCACACAGCCCCA]


>consensus_3823#1 ATCGCCCCGAGGTTTGTCAGCTAGTGTATACCGGNTATTCCTTACTTATATATCTGTTTT AGTAAACCAAACAAACCTAGNACAAACNCAACAGAAAGAAAACAAAGTAACCAATTATTA AGAACTGATTAAAGGNAGAGCACAACGCGAGATAGTTGTGCTACTAATGNGTCGGTGTGT TTCAATCGCGTTCTCAAAACGTCTTAACGTCGCGTCNGCGGGATAGTATCACACCTACAT GCGATTACCGTTTGCGTCCGTTTGCTTACACCGCCGTCNCAGGGCGTGTTACGTNGACAG AAAGGGGCACACACGACACGTGGCAAAAGANTGGTTGTCTCTGNGGTCTCTGTCTCTACC GACTNTTTNGGATTTCTACTACTTTCCGGACAANCGACAGCACGTACAATCTACACTTGG TTACTTGGCACACGTTTNGGTACGCACGGCACTTAACACAAAATTTAAANTTGACACANA GTTACTTACACTTCTGGACAGGGCAACAGGTGCACACACAAGGCACAGCACGCACACAAA CACAACGCAGCCCACACCAACACACCAACCAGNACATTGTTGGACCACCACAATAGGTCT AAGCACATCAAGTGCATTGGACACATCCACATCTGGTTGGTTTGCACAACCNACATGTAT CACACAGCCCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3823#0      ATCCCCCGAGGTTAGAACAGAAAAAAAAAACGATACAGATGCAGGAAGGAAACACGTATA 60
consensus_3823#1      ------------------------------------------------------------
                                                                                  

consensus_3823#0      GGAAAATTAACCCTACTACTACCATAATCCAATGATAGACAATATTTTCTGCAAAACCTT 120
consensus_3823#1      -----------------ATCGCCCCGAGGTT-TGTCAGCTAGTGTATACCGGNTATTCCT 42
                                       *   **   *     **  **  * * * * * *   *  * *

consensus_3823#0      TCAAAGCACATCCTTCTTCGTCCTCTACCAAAACTTAAG-CAGAGAAGGTGGAGGCAGAA 179
consensus_3823#1      TACTTATATATCTGTTTTAGTAAACCAAACAAACCTAGNACAAACNCAACAGAAAGAAAA 102
                      *      * ***  * ** **   * *   **** **   ** *       **   * **

consensus_3823#0      AAAAACACTCGTTTGTAAGATAGAGCATTATATATACATATATGAAACCGCCGAATCGCC 239
consensus_3823#1      CAAAGTAACCAATTATTA-----AGAACTGATTAAAGGNAGAGCACAACGCGAGATAGTT 157
                       ***  *  *  ** * *     ** * *   ** *   * *  * * ***   ** *  

consensus_3823#0      CTCGTGAATTCCAAAACCTCCTGTAGTAAACCTTTTAACACCACTTGTCACCCTCATATG 299
consensus_3823#1      GT-GCTACTAATGNGTCGGTGTGTTTCAATCGCGTTCTCAAAACGTCTTAACGTCGCGTC 216
                       * *  * *       *    ***   ** *   **  **  ** * * * * **   * 

consensus_3823#0      ATCACGATCCTCATGATCCTCAAACACATTGTCAAGTTCTATGGACGCTAGTGTTAGCGC 359
consensus_3823#1      NGCGGGATAGT-----------ATCACACCTACA--TGCGATTACCGTTTGCGTCCGTTT 263
                        *  ***  *           * ****    **  * * **   ** * * **  *   

consensus_3823#0      GCACAGTTTACGAACCGTTTTTCTCACGTTTCTATTTCTATGCTGTTCGAAACAAATACA 419
consensus_3823#1      GC-----TTAC--ACCGCCGTCNCAGGGCGTGT-----TACGTNGACAGAAAGGGGCACA 311
                      **     ****  ****   *      *  * *     ** *  *   ****     ***

consensus_3823#0      TAC-ATACATACGCCCAAGCATAAGTAAAACAAATACAACAAAACAAATCAACCGGAGAA 478
consensus_3823#1      CACGACACGTG-GCAAAAGANTGGTTGTCTCTGNGGTCTCTGTCTCTACCGACTNTTTNG 370
                       ** * ** *  **  ***  *   *    *        *       * * **       

consensus_3823#0      CAGGT-TAGTAAAATCAAAGCAAAGAAAAGGCAGCGCAAGGCGCGATACGTGTNATGTAG 537
consensus_3823#1      GATTTCTACTACTTTCCGGACAANCGACAGCACGTACAATCTACACTTGGT-TACTTGGC 429
                       *  * ** **   **    ***   * **   *  ***    *  *  ** *  *    

consensus_3823#0      GCGTGATCACTTCCACACGTTACTCGTCGTCAGCTAGTGTAATACCGTTATATTCCTTAC 597
consensus_3823#1      ACACGTTTNGGTACGCACGGCACTTAACACAA---AATTTAAANTTGACACANAG-TTAC 485
                       *  * *    * * ****  ***   *   *   * * ***    *  * *    ****

consensus_3823#0      TTATNTATCTGTTTTAGTAAACCAAACAAACCTAGACAAAACAANNAGAAAGAAAACAAA 657
consensus_3823#1      TTACACTTCTG----GACAGGGCAA-CAGGTGCACACACAAGGCACAGCACGCACACAAA 540
                      ***    ****       *   *** **     * *** **     ** * * * *****

consensus_3823#0      GTAACAAATTATTAAGAACGATTAAAGGCAGAGCACAACGCGAGATAGTTGTGCTACTAG 717
consensus_3823#1      -CACAACGCAGCCCACACCAACACACCAACCAGNACATTGTTGGAC-----CACCACAAT 594
                        *  *        * * * *   *      ** ***  *   **        * ** * 

consensus_3823#0      TGGTCGGTGTGTTTCAATCGCGTTCTCAAAACCGTCTTAACGTCGCGTCGCGGTATAGTA 777
consensus_3823#1      AGGTCTAAGCACATCAAGTGCATT-----GGACACATCCACATCTGGTTGGTTTGCA--- 646
                       ****   *    ****  ** **        *   *  ** **  ** *   *  *   

consensus_3823#0      TCACACCTACATGCGATTACCGTTTGCTCCGTTTGCTTACACCGCCGTCAAGGGGGTTAC 837
consensus_3823#1      -CA-ACCNACATGT-ATCAC--ACAGCCCCA----------------------------- 672
                       ** *** *****  ** **     ** **                              

consensus_3823#0      GGAAGAAGGCAAAGAAGGCAAAGATGTGTTGGGTTGTTTAGATTTGATTTCTATATTCGG 897
consensus_3823#1      ------------------------------------------------------------
                                                                                  

consensus_3823#0      AAACGAAGCAGTACAATTACATGTTCTGCAAGTTTGTAGAGCATACAAATTAATGAAAGT 957
consensus_3823#1      ------------------------------------------------------------
                                                                                  

consensus_3823#0      ATAATTGAAGGAAGGA 973
consensus_3823#1      ----------------
                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)