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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence
[AGAATNCCCCGAGGTTACATCTATATTTCTACTTTACAAGGTATTTCTACACTATTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCCAAAATTTAAGACGTTCTAAACATGCCTATAATTCAAAGCACAAGTTACAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTAGTCCCCTTCCAATACATATAAACGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGGNGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATNATTAAAATCAACTTAAGATCAGGTTGGAAAAGAAAATAATAATATATTACAAAATACATCATTGGATACG]
[+] EMBL AL929826 [AGAATNCCCCGAGGTTACATCTATATTTCTACTTTACAAGGTATTTCTACACTATTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCCAAAATTTAAGACGTTCTAAACATGCCTATAATTCAAAGCACAAGTTACAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTAGTCCCCTTCCAATACATATAAACGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGGNGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATNATTAAAATCAACTTAAGATCAGGTTGGAAAAGAAAATAATAATATATTACAAAATACATCATTGGATACG]
consensusID : consensus_3824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[CCCCGAGGTTATGAAAATATGAACATTATGTNCAAAATTGCAGTAATTGCTTCATCAAAATGTAAACCCGGAGAAAAAGAATCACTTCTCTGTGTATGTGGTGTATACTAGTATATTATGTCTAGATCAATTCTTAATACTAACGCTGTGCGGGATCGTTTTTCTACACTCTATATTTCCTACTTTAGAAGCGTATTTCTACACACTTTTTGGACGTGGACTGAGANGACTCAAACAACTAACTGACTGCTTAAACTACTTTCATTTCTCTTCTTTTGTGACAAAATTTCATCGCTCTTTAAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATNTAAGATCAAAACGTCAAACGGGTCGACAGTGTCGTATCTTAAAGAATCGCCGCTACCGCTCTATGACATCCTAACATGCAAACATTTAAGACGTTCTAAAACATTGCCTATCANTTAAACACGCAAAGTTAACACACTGTTNNAACGATATCATACGATCACGAATGATCATTTGCTACGACACATACTGGCTACATGTTGAGCTAGATCTTGAGAATGACTAAGAGTGCCTTACTTAAACCATTTAACAACCTATAAATTCTATATGTTTCATNACAGTGTGTCTGTCCCT]
[+] EMBL AL694550 [CCCCGAGGTTATGAAAATATGAACATTATGTNCAAAATTGCAGTAATTGCTTCATCAAAATGTAAACCCGGAGAAAAAGAATCACTTCTCTGTGTATGTGGTGTATACTAGTATATTATGTCTAGATCAATTCTTAATACTAACGCTGTGCGGGATCGTTTTTCTACACTCTATATTTCCTACTTTAGAAGCGTATTTCTACACACTTTTTGGACGTGGACTGAGANGACTCAAACAACTAACTGACTGCTTAAACTACTTTCATTTCTCTTCTTTTGTGACAAAATTTCATCGCTCTTTAAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATNTAAGATCAAAACGTCAAACGGGTCGACAGTGTCGTATCTTAAAGAATCGCCGCTACCGCTCTATGACATCCTAACATGCAAACATTTAAGACGTTCTAAAACATTGCCTATCANTTAAACACGCAAAGTTAACACACTGTTNNAACGATATCATACGATCACGAATGATCATTTGCTACGACACATACTGGCTACATGTTGAGCTAGATCTTGAGAATGACTAAGAGTGCCTTACTTAAACCATTTAACAACCTATAAATTCTATATGTTTCATNACAGTGTGTCTGTCCCT]
consensusID : consensus_3824#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[CCGCCCACGCGTCCGTCTACACATTTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATGAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCAAAATTTAAGACGTTCTAAACATGCCTATAATTAAAAGCAAAGTTAAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTGTCCCCTTCCAATCATATAAAGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGCGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATTTTTTTTAAAATCAACCTTAAGATCAGGTTGCAAAGCAAAACTAATAATATATTAC]
[+] EMBL BM602747 [CCGCCCACGCGTCCGTCTACACATTTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATGAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCAAAATTTAAGACGTTCTAAACATGCCTATAATTAAAAGCAAAGTTAAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTGTCCCCTTCCAATCATATAAAGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGCGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATTTTTTTTAAAATCAACCTTAAGATCAGGTTGCAAAGCAAAACTAATAATATATTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3824#0 ------------------------------------------------------------
consensus_3824#2 ------------------------------------------------------------
consensus_3824#1 CCCCGAGGTTATGAAAATATGAACATTATGTNCAAAATTGCAGTAATTGCTTCATCAAAA 60
consensus_3824#0 ------------------------------------------------------------
consensus_3824#2 ------------------------------------------------------------
consensus_3824#1 TGTAAACCCGGAGAAAAAGAATCACTTCTCTGTGTATGTGGTGTATACTAGTATATTATG 120
consensus_3824#0 -------------------------------AGAATNCCCCGAGGTTACATCTATATTTC 29
consensus_3824#2 ------------------------------------------------------------
consensus_3824#1 TCTAGATCAATTCTTAATACTAACGCTGTGCGGGATCGTTTTTCTACACTCTATATTTCC 180
consensus_3824#0 TACTTTACAAG-GTATTTCTACACT-ATTTTGGA-GTGGA-TGAGAAGA-TCAAACAACT 84
consensus_3824#2 --CCGCCCACGCGTCCGTCTACACA-TTTTTGGA-GTGGA-TGAGAAGA-TCAAACAACT 54
consensus_3824#1 TACTTTAGAAGCGTATTTCTACACACTTTTTGGACGTGGACTGAGANGACTCAAACAACT 240
* * * ** ******* ******* ***** ***** ** **********
consensus_3824#0 AACTGA-TGCTTAAATA---TTTATTTCTCTTCTTTTGTGACAAA-TTTCATCGTTTT-- 137
consensus_3824#2 AACTGA-TGCTTAAATA---TTTATTTCTCTTCTTTTGTGACAAA-TTTCATCGTTTT-- 107
consensus_3824#1 AACTGACTGCTTAAACTACTTTCATTTCTCTTCTTTTGTGACAAAATTTCATCGCTCTTT 300
****** ******** ** ********************** ******** * *
consensus_3824#0 -AATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGA 196
consensus_3824#2 -AATGTCCAATGAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGA 166
consensus_3824#1 AAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGA 360
********** ************************************************
consensus_3824#0 TCCAAACGTTTGGGTTCTTAAATTAAGATCAAAACGTCAAACGGGTCGA-AGTGTCGTAT 255
consensus_3824#2 TCCAAACGTTTGGGTTCTTAA-TTAAGATCAAAACGTCAAACGGGTCGA-AGTGTCGTAT 224
consensus_3824#1 TCCAAACGTTTGGGTTCTTAATNTAAGATCAAAACGTCAAACGGGTCGACAGTGTCGTAT 420
********************* ************************** **********
consensus_3824#0 CTTAAAGAATCGCCG-TACCG-TCTATGACATCCTAACATGCCAAAATTTAAGACGTTCT 313
consensus_3824#2 CTTAAAGAATCGCCG-TACCG-TCTATGACATCCTAACATGC-AAAATTTAAGACGTTCT 281
consensus_3824#1 CTTAAAGAATCGCCGCTACCGCTCTATGACATCCTAACATGCAAACATTTAAGACGTTCT 480
*************** ***** ******************** ** **************
consensus_3824#0 AAA-CAT-GCCTAT-AATTCAAAGCAC-AAGTTACAA----ATGTAAACGATATCATACG 365
consensus_3824#2 AAA-CAT-GCCTAT-AATTAAAAGCA--AAGTTA-AA----ATGTAAACGATATCATACG 331
consensus_3824#1 AAAACATTGCCTATCANTTAAACACGCAAAGTTAACACACTGTTNNAACGATATCATACG 540
*** *** ****** * ** ** * ****** * * **************
consensus_3824#0 ATCACGAATGATCATTTTGCTACGA-ACATACTGGCTACATGTTGAGCTAGATCT-GAGA 423
consensus_3824#2 ATCACGAATGATCATTTTGCTACGA-ACATACTGGCTACATGTTGAGCTAGATCT-GAGA 389
consensus_3824#1 ATCACGAATGATCATTT-GCTACGACACATACTGGCTACATGTTGAGCTAGATCTTGAGA 599
***************** ******* ***************************** ****
consensus_3824#0 ATGATTT-GTGTGC-TTACTTAAAC-ATTTAACAACCCTATAATTCTATATGTTTCATT- 479
consensus_3824#2 ATGATTTTGTGTGC-TTACTTAAAC-ATTTAACAACCCTATAATTCTATATGTTTCATT- 446
consensus_3824#1 ATGACTAAGAGTGCCTTACTTAAACCATTTAACAACCTATAAATTCTATATGTTTCATNA 659
**** * * **** ********** *********** *****************
consensus_3824#0 TAGTGTGTCTAGTCCCCTTCCAATACATATAAACGTCATCACTTGCTGACGGGGGATGTA 539
consensus_3824#2 TAGTGTGTCT-GTCCCCTTCCAAT-CATATAAA-GTCATCACTTGCTGACGGGGGATGTA 503
consensus_3824#1 CAGTGTGTCT-GTCCCT------------------------------------------- 675
********* *****
consensus_3824#0 TGCGAAGAATAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTG 599
consensus_3824#2 TGCGAAGAATA---TTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTG 560
consensus_3824#1 ------------------------------------------------------------
consensus_3824#0 GGNGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATNATT---AAAATCAAC-T 655
consensus_3824#2 G-CGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATTTTTTTTAAAATCAACCT 619
consensus_3824#1 ------------------------------------------------------------
consensus_3824#0 TAAGATCAGGTTGGAAAAGAAAA-TAATAATATATTACAAAATACATCATTGGATACG 712
consensus_3824#2 TAAGATCAGGTTGCAAAGCAAAACTAATAATATATTAC-------------------- 657
consensus_3824#1 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||