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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1076 fasta sequence
[CCGTGATTTTCCGATGAACCTTCCGGACATGATGACCGACGATCAGCAGCAGCTACTGCACCAGCAGCAACAGCAACACGTTCAGTCGGTGCTACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCACCAGAGCGGTGGCAGCAGCAACAGCAGCGACAAATCCGGCTCATCCAGTAGCCCGACACCCGGCGGACACATTTCGCCCGTCCCGTCAGCACACACGCAGCTGATGTCGTACAAGCTGCAGGGCGGTGGTGATTTCGTCGGCGGTGGCGCAAATAACGGTGGCACAAACGGTGGCCTCCTCGGGCTCGGCCTACAGCACGGCCCGGGTAGCAACAGCAGCAGCCGCAGCAGCGTCAGCAGTAACAGCAGCATGCACAGCAACGGCAACGGCAACGTCAACGGTGGTGGTGGTGGTGGAAACGGTCTCATCGGTCCCGGCGGCACCCTGGGCATCGTGTCGGGCGACTACATCGATCTGAACGAGTTGCTCAACATGGACGGCCACTGCGGCGGTAACGATGAGGAACATTCGCTAGTCGCCTAAGCAGAATGCGGGCAGCAGCGGGAACGACGGTACCCACGACCTTCTCCACGAGGAGGCAGCAGTGCATTTCTTCAATTTCTTCAACCTGCTCGATCTATTCGATCATTCGACAAAAATATTTGACAAACAACACACAAATACTATGTAAATGTCTATGAACCGCCCCATCCACAAAGGGGGGCATGATGTGAGTGTGTGTATATGTGTCTCACTGTTGTATGTTGTTATCGATGTGGCCCAACCCATCCCATCCACCACCGCCGGCGCAATGTCAGCGTTGCCTGCGGACCGTAGAGAAGATGCGGGGAGATTGCGGCAGCCAGGAAGCAGCAGTAACGGCACACACAGAAGACAAATTGGCTAGCTAAAGGCCTGTGCGAAAGGCAAAAAGCGTCCAAAATTCAACCTTTAACCGTAACCACGACGAACCGAGAGTGAGAGAGAGAGAGAGAGAGGCCCGTGAGTTTATATTAAGAAAAAGTTCGTTTAAAAAATAATGTTAACTGCAAAATTAACGCATATTGAG]
[+] EMBL BM603844 [CCGTGATTTTCCGATGAACCTTCCGGACATGATGACCGACGATCAGCAGCAGCTACTGCACCAGCAGCAACAGCAACACGTTCAGTCGGTGCTACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCACCAGAGCGGTGGCAGCAGCAACAGCAGCGACAAATCCGGCTCATCCAGTAGCCCGACACCCGGCGGACACATTTCGCCCGTCCCGTCAGCACACACGCAGCTGATGTCGTACAAGCTGCAGGGCGGTGGTGATTTCGTCGGCGGTGGCGCAAATAACGGTGGCACAAACGGTGGCCTCCTCGGGCTCGGCCTACAGCACGGCCCGGGTAGCAACAGCAGCAGCCGCAGCAGCGTCAGCAGTAACAGCAGCATGCACAGCAACGGCAACGGCAACGTCAACGGTGGTGGTGGTGGTGGAAACGGTCTCATCGGTCCCGGCGGCACCCTGGGCATCGTGTCGGGCGACTACATCGATCTGAACGAGTTGCTCAACATGGACGGCCACTGCGGCGGTAACGATGAGGAACATTCGCTAGTCGCCTAAGCAGAATGCGGGCAGCAGCGGGAACGACGGTACCCACGACCTTCTCCACGAGGAGGCAGCAGTGCATTTCTTCAATTTCTTCAACCTGCTCGATCTATTCGATCATTCGACAAAAATATTTGACAAACAACACACAAATACTATGTAAA ]
[+] EMBL BM611867 [ ccGGAAACGGTCTCATCGGTCCCGGCGGCACCCTGGGCATCGTGTCGGGCGACTACATCGATCTGAACGAGTTGCTCAACATGGACGGCCACTGCGGCGGTAACGATGAGGAACATTCGCTAGTCGCCTAAGCAGAATGCGGGCAGCAGCGGGAACGACGGTACCCACGACCTTCTCCACGAGGAGGCAGCAGTGCATTTCTTCAATTTCTTCAACCTGCTCGATCTATTCGATCATTCGACAAAAATATTTGACAAACAACACACAAATACTATGTAAATGTCTATGAACCGCCCCATCCACAAAGGGGGGCATGATGTGAGTGTGTGTATATGTGTCTCACTGTTGTATGTTGTTATCGATGTGGCCCAACCCATCCCATCCACCACCGCCGGCGCAATGTCAGCGTTGCCTGCGGACCGTAGAGAAGATGCGGGGAGATTGCGGCAGCCAGGAAGCAGCAGTAACGGCACACACAGAAGACAAATTGGCTAGCTAAAGGCCTGTGCGAAAGGCAAAAAGCGTCCAAAATTCAACCTTTAACCGTAACCACGACGAACCGAGAGTGAGAGAGAGAGAGAGAGAGGCCCGTGAGTTTATATTAAGAAAAAGTTCGTTTAAAAAATAATGTTAACTGCAAAATTAACGCATATTGAG]
consensusID : consensus_3827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCTTCAATTTCTTCAACCTGCTCGATCTATTCGATCATTCGACAAAAATATTTGACAAACAACACACAAATACTATGAAAATGTCTATGAACCGCCCCATCCACAAAGGGGGGGGGCATGATGTGAGTGTGTGTATATGTGTCTCACTGTTGTATGTTGTTATCGATGTGGCCCAACCCATCCCATCCACCACCGCCGGCGCAATGTCAGCGTTGCCTGCGGACCGTAGAGAAGATGCGGGGAGATTGCGGCAGCCAGGAAGCAGCAGTAACGGCACACACAGAAGACAAATCGGCTAGCTAAAGGCCTGTGCGAAAGGCAAAAAGCGTCCAAAATTCAACCTTTAACCGGAACCACGACGAACCGAGAGTGAGAGAGAGAGAGAGAGGCCCGTGAGTTTATATTAAGAAAAAGTTTGTTTAAAAAATAATGTTAACTGCAAAATTAACGCATATGTAAAACGTAGGTAGTAGGTGAGTGAAACGTGGGTAGTAGGTAGGCAGCAAACTTGGCAGCAAAAGCAAAACAACCATCAGAACCCGTTACACAACATTTGGCGCAATAGTACAGTGCTCGTTTTTTGTTTCGTTTTGTTTCAACGAAGATTTCGTTTCTCCATATGTGTGTATACTAAAAAAAACCATTCCC]
[+] EMBL BM634910 [CCGCCCACGCGTCCGCCCACGCGTCCGCTTCAATTTCTTCAACCTGCTCGATCTATTCGATCATTCGACAAAAATATTTGACAAACAACACACAAATACTATGAAAATGTCTATGAACCGCCCCATCCACAAAGGGGGGGGGCATGATGTGAGTGTGTGTATATGTGTCTCACTGTTGTATGTTGTTATCGATGTGGCCCAACCCATCCCATCCACCACCGCCGGCGCAATGTCAGCGTTGCCTGCGGACCGTAGAGAAGATGCGGGGAGATTGCGGCAGCCAGGAAGCAGCAGTAACGGCACACACAGAAGACAAATCGGCTAGCTAAAGGCCTGTGCGAAAGGCAAAAAGCGTCCAAAATTCAACCTTTAACCGGAACCACGACGAACCGAGAGTGAGAGAGAGAGAGAGAGGCCCGTGAGTTTATATTAAGAAAAAGTTTGTTTAAAAAATAATGTTAACTGCAAAATTAACGCATATGTAAAACGTAGGTAGTAGGTGAGTGAAACGTGGGTAGTAGGTAGGCAGCAAACTTGGCAGCAAAAGCAAAACAACCATCAGAACCCGTTACACAACATTTGGCGCAATAGTACAGTGCTCGTTTTTTGTTTCGTTTTGTTTCAACGAAGATTTCGTTTCTCCATATGTGTGTATACTAAAAAAAACCATTCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3827#0 CCGTGATTTTCCGATGAACCTTCCGGACATGATGACCGACGATCAGCAGCAGCTACTGCA 60
consensus_3827#1 ------------------------------------------------------------
consensus_3827#0 CCAGCAGCAACAGCAACACGTTCAGTCGGTGCTACAGCAACAGCAGCAGCAGCAGCAGCA 120
consensus_3827#1 ------------------------------------------------------------
consensus_3827#0 GCAGCACCAGAGCGGTGGCAGCAGCAACAGCAGCGACAAATCCGGCTCATCCAGTAGCCC 180
consensus_3827#1 ------------------------------------------------------------
consensus_3827#0 GACACCCGGCGGACACATTTCGCCCGTCCCGTCAGCACACACGCAGCTGATGTCGTACAA 240
consensus_3827#1 ------------------------------------------------------------
consensus_3827#0 GCTGCAGGGCGGTGGTGATTTCGTCGGCGGTGGCGCAAATAACGGTGGCACAAACGGTGG 300
consensus_3827#1 ------------------------------------------------------------
consensus_3827#0 CCTCCTCGGGCTCGGCCTACAGCACGGCCCGGGTAGCAACAGCAGCAGCCGCAGCAGCGT 360
consensus_3827#1 ------------------------------------------------------------
consensus_3827#0 CAGCAGTAACAGCAGCATGCACAGCAACGGCAACGGCAACGTCAACGGTGGTGGTGGTGG 420
consensus_3827#1 ------------------------------------------------------------
consensus_3827#0 TGGAAACGGTCTCATCGGTCCCGGCGGCACCCTGGGCATCGTGTCGGGCGACTACATCGA 480
consensus_3827#1 ------------------------------------------------------------
consensus_3827#0 TCTGAACGAGTTGCTCAACATGGACGGCCACTGCGGCGGTAACGATGAGGAACATTCGCT 540
consensus_3827#1 ------------------------------------------------------------
consensus_3827#0 AGTCGCCTAAGCAGAATGCGGGCAGCAGCGGGAACGACGGTACCCACGACCTTCTCCACG 600
consensus_3827#1 ---------------------------------------------------CCGCCCACG 9
*****
consensus_3827#0 AGGAGGCAGCAGTGCATTT-CTTCAATTTCTTCAACCTGCTCGATCTATTCGATCATTCG 659
consensus_3827#1 CGTCCGC--CCACGCGTCCGCTTCAATTTCTTCAACCTGCTCGATCTATTCGATCATTCG 67
* ** * ** * ****************************************
consensus_3827#0 ACAAAAATATTTGACAAACAACACACAAATACTATGTAAATGTCTATGAACCGCCCCATC 719
consensus_3827#1 ACAAAAATATTTGACAAACAACACACAAATACTATGAAAATGTCTATGAACCGCCCCATC 127
************************************ ***********************
consensus_3827#0 CACAAAGGGGGG---CATGATGTGAGTGTGTGTATATGTGTCTCACTGTTGTATGTTGTT 776
consensus_3827#1 CACAAAGGGGGGGGGCATGATGTGAGTGTGTGTATATGTGTCTCACTGTTGTATGTTGTT 187
************ *********************************************
consensus_3827#0 ATCGATGTGGCCCAACCCATCCCATCCACCACCGCCGGCGCAATGTCAGCGTTGCCTGCG 836
consensus_3827#1 ATCGATGTGGCCCAACCCATCCCATCCACCACCGCCGGCGCAATGTCAGCGTTGCCTGCG 247
************************************************************
consensus_3827#0 GACCGTAGAGAAGATGCGGGGAGATTGCGGCAGCCAGGAAGCAGCAGTAACGGCACACAC 896
consensus_3827#1 GACCGTAGAGAAGATGCGGGGAGATTGCGGCAGCCAGGAAGCAGCAGTAACGGCACACAC 307
************************************************************
consensus_3827#0 AGAAGACAAATTGGCTAGCTAAAGGCCTGTGCGAAAGGCAAAAAGCGTCCAAAATTCAAC 956
consensus_3827#1 AGAAGACAAATCGGCTAGCTAAAGGCCTGTGCGAAAGGCAAAAAGCGTCCAAAATTCAAC 367
*********** ************************************************
consensus_3827#0 CTTTAACCGTAACCACGACGAACCGAGAGTGAGAGAGAGAGAGAGAGAGGCCCGTGAGTT 1016
consensus_3827#1 CTTTAACCGGAACCACGACGAACCGAGAGTGAGAGAGAGAGAGAGAG--GCCCGTGAGTT 425
********* ************************************* ***********
consensus_3827#0 TATATTAAGAAAAAGTTCGTTTAAAAAATAATGTTAACTGCAAAATTAACGCATATTGAG 1076
consensus_3827#1 TATATTAAGAAAAAGTTTGTTTAAAAAATAATGTTAACTGCAAAATTAACGCATATGTAA 485
***************** ************************************** *
consensus_3827#0 ------------------------------------------------------------
consensus_3827#1 AACGTAGGTAGTAGGTGAGTGAAACGTGGGTAGTAGGTAGGCAGCAAACTTGGCAGCAAA 545
consensus_3827#0 ------------------------------------------------------------
consensus_3827#1 AGCAAAACAACCATCAGAACCCGTTACACAACATTTGGCGCAATAGTACAGTGCTCGTTT 605
consensus_3827#0 ------------------------------------------------------------
consensus_3827#1 TTTGTTTCGTTTTGTTTCAACGAAGATTTCGTTTCTCCATATGTGTGTATACTAAAAAAA 665
consensus_3827#0 ---------
consensus_3827#1 ACCATTCCC 674
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||