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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 956 fasta sequence
[GCAGAATCCCGNGGTTACGTACAGTCGCAGCACCAACGGNGGTTACACGGTGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTACNGGGCGGATATGACCTGACGTTCAAAACTGCCACAACCAAACGACGCTTCTGGCGTACGGTGCCGATACAGCAAGTGGCGGCTGGCGTCGCGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGCATCTCTNTGCTTCGNCTATACAACTACACCTACGGATAGTTGACGATATCTAACTACGACTACTTTNTACGCCAAACCGTACATACCACGACTGCTGAACTACCAACGGTGTATTACCCGGATTGAAGGACGCATGAGGGAGGAGGAANAGGAGGATTGTAGGCGGACAGGGNTTGTACCAGAGGAGGAGTGACCTGCCGGGACAAACGGTTANGCCTTAAAAACGACGGATGGACNCAGTANTAAGCCAANCCTGGAACACGGTATTNCTTACACTACANTACAGAAAACGNTACCCCGGAAAAAGTTGCGAANCGGCGCGACTAGNGCGAAAACCCCGGCACACAAGGGGAAAGNCCANGGACCCCCCANGAGGGCCCCCGGCCCCCGGGGCCTATAAGCGGCACCCCACACCAAACCGAATCCCAAGCNAACANACGGGGCGCTTAGGGGTANAAAACGACAGCAAGCACCCCNGCAAGACATACAACGACAACACACGAANGGCCACACCGTAANGCNCTTTCCATCNNCACTNCCNCACCCCGGCAACCACACACCGCNANACNCCANACCCGCCTACAACNACACAAGGGCGAGAACCCAACCCGGCATNNCACCAGCCAACATAGTAAGCGACACNCAAAGTNAAATAGANGAN]
[+] EMBL AL694599 [GCAGAATCCCGNGGTTACGTACAGTCGCAGCACCAACGGNGGTTACACGGTGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTACNGGGCGGATATGACCTGACGTTCAAAACTGCCACAACCAAACGACGCTTCTGGCGTACGGTGCCGATACAGCAAGTGGCGGCTGGCGTCGCGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGCATCTCTNTGCTTCGNCTATACAACTACACCTACGGATAGTTGACGATATCTAACTACGACTACTTTNTACGCCAAACCGTACATACCACGACTGCTGAACTACCAACGGTGTATTACCCGGATTGAAGGACGCATGAGGGAGGAGGAANAGGAGGATTGTAGGCGGACAGGGNTTGTACCAGAGGAGGAGTGACCTGCCGGGACAAACGGTTANGCCTTAAAAACGACGGATGGACNCAGTANTAAGCCAANCCTGGAACACGGTATTNCTTACACTACANTACAGAAAACGNTACCCCGGAAAAAGTTGCGAANCGGCGCGACTAGNGCGAAAACCCCGGCACACAAGGGGAAAGNCCANGGACCCCCCANGAGGGCCCCCGGCCCCCGGGGCCTATAAGCGGCACCCCACACCAAACCGAATCCCAAGCNAACANACGGGGCGCTTAGGGGTANAAAACGACAGCAAGCACCCCNGCAAGACATACAACGACAACACACGAANGGCCACACCGTAANGCNCTTTCCATCNNCACTNCCNCACCCCGGCAACCACACACCGCNANACNCCANACCCGCCTACAACNACACAAGGGCGAGAACCCAACCCGGCATNNCACCAGCCAACATAGTAAGCGACACNCAAAGTNAAATAGANGAN]
consensusID : consensus_3828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 846 fasta sequence
[TCATACACGAGCAACTCGAACAACTCATACACCAACGGCAGCCGCGCGTACAGCGGCCTGGCCAATACCGATAATCCCGCAACATCGACGCGATTCTACTCCAACGTACAGTCGCAAGCCACCAACGGCGGTGACACGGGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTCGGGCGGATCGACCGAGTTCAAAACTGCCCACAACCAAACTACGCTTCTGGCGTACGGTGCCGATCAGAAGGGCGGCGGCGTCGGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGATTTTGCTTCGCTTCAACTCACCTACGATAGTGACGATTCTAACTCGACTCTTTCGCAACCGTCATCCACGCTGCTGAACTCCAACGGTGTATTCCCGGATGAGGACGATGAGGAGGAGGAAGAGGAGGATGTGGCGGCGGGTGTACAGGAGGAGGACGCGGACGAACGTAGCCTAAACGCGGTGGACAGTTTAGCCACCGACAGTTCTTCCTCGTCGAACGTCCCGAAAGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCCACCACGATCAGCAACGGGCTTGGTAGGCGACACCGAAATACGAAAGAGGCAATACATATATATTTTTGAAACCGAAGCAACGCTAACAACAGGCGACCACGATTCACACAAATGTAACAAACAAATAACGAGATAAAACCACACAACAAGTATGAATTACTAGAATATAATGAGCGTTGGTTGAAACC]
[+] EMBL BX612685 [TCATACACGAGCAACTCGAACAACTCATACACCAACGGCAGCCGCGCGTACAGCGGCCTGGCCAATACCGATAATCCCGCAACATCGACGCGATTCTACTCCAACGTACAGTCGCAAGCCACCAACGGCGGTGACACGGGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTCGGGCGGATCGACCGAGTTCAAAACTGCCCACAACCAAACTACGCTTCTGGCGTACGGTGCCGATCAGAAGGGCGGCGGCGTCGGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGATTTTGCTTCGCTTCAACTCACCTACGATAGTGACGATTCTAACTCGACTCTTTCGCAACCGTCATCCACGCTGCTGAACTCCAACGGTGTATTCCCGGATGAGGACGATGAGGAGGAGGAAGAGGAGGATGTGGCGGCGGGTGTACAGGAGGAGGACGCGGACGAACGTAGCCTAAACGCGGTGGACAGTTTAGCCACCGACAGTTCTTCCTCGTCGAACGTCCCGAAAGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCCACCACGATCAGCAACGGGCTTGGTAGGCGACACCGAAATACGAAAGAGGCAATACATATATATTT ]
[-] EMBL CNS08UDU [ CACCGACAGTTCTTCCTCGTCGAACGTCCCGAAAGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCCACCACGATCAGCAGCGGGCTTGGTAGGTGACACCGGAATACGAAAGAGGCAATACATATATATTTTTGAAACCGAAGCAACGCTAACAACAGGCGACCACGATTCACACAAATGTAACAAACAAATAACGAGATAAAACCACACAACAAGTATGAATTACTAGAATATAATGAGCGTTGGTTGAAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3828#0 ------------------------------------------------------------
consensus_3828#1 TCATACACGAGCAACTCGAACAACTCATACACCAACGGCAGCCGCGCGTACAGCGGCCTG 60
consensus_3828#0 ---------------------------GCAGAATCCCGNGGTTACGTACAGTCGCAG--C 31
consensus_3828#1 GCCAATACCGATAATCCCGCAACATCGACGCGATTCTACTCCAACGTACAGTCGCAAGCC 120
* ** * ************* *
consensus_3828#0 ACCAACGGNGGTTACACGGTGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCA 91
consensus_3828#1 ACCAACGGCGGTGACACGG-GCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCA 179
******** *** ****** ****************************************
consensus_3828#0 GTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAG 151
consensus_3828#1 GTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAG 239
************************************************************
consensus_3828#0 CGATGACACTATGTACNGGGCGGATATGACCTGACGTTCAAAACTGCC-ACAACCAAACG 210
consensus_3828#1 CGATGACACTATGT--CGGGCGGAT-CGACCGA--GTTCAAAACTGCCCACAACCAAACT 294
************** ******** **** ************* **********
consensus_3828#0 ACGCTTCTGGCGTACGGTGCCGATACAGCAAGTGGCGGCTGGCGTCGCGTTCGTTGCTAG 270
consensus_3828#1 ACGCTTCTGGCGTACGGTGCCGAT-CAGAAGG--GCGGC-GGCGTCG-GTTCGTTGCTAG 349
************************ *** * * ***** ******* ************
consensus_3828#0 ACAGCGAGCCGGCAACTGAGCGTGCATCTCTNTGCTTCGNCTATACAACTACACCTACGG 330
consensus_3828#1 ACAGCGAGCCGGCAACTGAGCGTG----ATTTTGCTTCGCTT---CAACT-CACCTACG- 400
************************ * ******* * ***** ********
consensus_3828#0 ATAGTTGACGATATCTAACTACGACTACTTTNTACGCCAAACCGTACATACCACGACTGC 390
consensus_3828#1 ATAGT-GACGAT-TCTAACT-CGACTCTTTCGCA------ACCGT-CAT-CCACG-CTGC 448
***** ****** ******* ***** ** * ***** *** ***** ****
consensus_3828#0 TGAACTACCAACGGTGTATTACCCGGATTGAAGGACGCATGAGGGAGGAGGAANAGGAGG 450
consensus_3828#1 TGAACT-CCAACGGTGTATT-CCCGGAT--GAGGACG-ATGAGG-AGGAGGAAGAGGAGG 502
****** ************* ******* ****** ****** ******** ******
consensus_3828#0 ATTGTAGGCGGACAGGGNTTGTACCAGAGGAGGAGTGACCTGCCGGGACAAACGGTTANG 510
consensus_3828#1 AT-GTGG-----CGGCGGGTGTACAGGAGGAGGA--------CGCGGACGAACG----TA 544
** ** * * * * ***** ******** * **** ****
consensus_3828#0 CCTTAAAAACGACGGATGGACNCAGTANTAAGCCAANCCTGGAACACGGTAT-TNCTTAC 569
consensus_3828#1 GCCTAAACGCGGTGGACAGTTTAGCCACCGA--CAGTTCTTCCTCGTCGAACGTCCCGAA 602
* **** ** *** * * * ** ** * * * * * *
consensus_3828#0 ACTACANTACAGAAAACGNTACCCCGGAAAAAGTTGCGAANCGGCGCGACTAGNGCGAAA 629
consensus_3828#1 AGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCC---- 658
* * ** * **** ** * * ** ** **** *
consensus_3828#0 ACCCCGGCACACAAGGGGAAAGNCCANGGACCCCCCANGAGGGCCCCCGGCCCCCGGGGC 689
consensus_3828#1 ACCACGATCAGCAACGGGCTTGGTAGGCGACACCGAAATACGA---AAGAGGCAATACAT 715
*** ** *** *** * *** ** * * * * *
consensus_3828#0 CTATAAGCGGCACCCCACACCAAACCGAATCCCAAGCNAACANACGGGGCGCTTAGGGGT 749
consensus_3828#1 ATATATTTTTGAAACCGAAGCAACGCTAACAACAGGCGACCAC--GATTCACACAAATGT 773
**** * ** * *** * ** ** ** * ** * * * * **
consensus_3828#0 ANAAAACGACAGCAAGCACCCCNGCAAGACATACAACGACAACACACGAANGGCCACACC 809
consensus_3828#1 AACAAA------CAAATAACGAGATAAAAC-CACA-CAACAA-GTATGAATTACTAGAAT 824
* *** *** * * ** ** *** * **** * *** * * *
consensus_3828#0 GTAANGCNCTTTCCATCNNCACTNCCNCACCCCGGCAACCACACACCGCNANACNCCANA 869
consensus_3828#1 ATAATGAGCGTTG-GTTGAAACC------------------------------------- 846
*** * * ** * **
consensus_3828#0 CCCGCCTACAACNACACAAGGGCGAGAACCCAACCCGGCATNNCACCAGCCAACATAGTA 929
consensus_3828#1 ------------------------------------------------------------
consensus_3828#0 AGCGACACNCAAAGTNAAATAGANGAN 956
consensus_3828#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||