These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [CGAGGTTATNGACGAAGGACGTTTTTAATTAATTTATTAACCTGCCAGGATCAGGTCAGGTGTGCGCCCTTTGGGTTCTTTGTTCTTTGTGAACGAGATATTTATTGTGAGCTCTAACATGATCCTTTCTTTTCAATTTTTTGTCTTGTTGTTTGCTCCACTTTACACAACGTCCCCCCCACAAAACATCCCACACTCAAACCTCCGGACCGCAATCTCTCTTCCAGTTGTTTTTCCGTCGTACGCCCGTTAGCAGCCGTCGCCGCCGCCGCCCCGACTCCGGACCAGAGTGGCTCGTGGGATGGCGCCTGTTAGGGTGGGCAACCGGGTGTCCACTTATGTATTGATTGGTGGTNNATNGTGCGTGGTCCAAGTTAGCATTGAACTTGCACCCACCTCGGCCTAAAGAAGTTTTCACTTGCCAGGTGACCTTAACCGGCCTTGCTCAGCCGTCTTGCCAGTATAGGGTATGCTAGATATCCTCGGGAGCTCAAACCTCATCTAATTGAGGCATCTTTCACAGCTTCCAGCTG] [+] EMBL AL694663 [CGAGGTTATNGACGAAGGACGTTTTTAATTAATTTATTAACCTGCCAGGATCAGGTCAGGTGTGCGCCCTTTGGGTTCTTTGTTCTTTGTGAACGAGATATTTATTGTGAGCTCTAACATGATCCTTTCTTTTCAATTTTTTGTCTTGTTGTTTGCTCCACTTTACACAACGTCCCCCCCACAAAACATCCCACACTCAAACCTCCGGACCGCAATCTCTCTTCCAGTTGTTTTTCCGTCGTACGCCCGTTAGCAGCCGTCGCCGCCGCCGCCCCGACTCCGGACCAGAGTGGCTCGTGGGATGGCGCCTGTTAGGGTGGGCAACCGGGTGTCCACTTATGTATTGATTGGTGGTNNATNGTGCGTGGTCCAAGTTAGCATTGAACTTGCACCCACCTCGGCCTAAAGAAGTTTTCACTTGCCAGGTGACCTTAACCGGCCTTGCTCAGCCGTCTTGCCAGTATAGGGTATGCTAGATATCCTCGGGAGCTCAAACCTCATCTAATTGAGGCATCTTTCACAGCTTCCAGCTG] consensusID : consensus_3834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [AGAATCCCCCGAGGTTNTGCGGGCACGCCGCGGAACGGGAGTGCCCAGAGCGAGCCTAGATTAATTTAATTTATTTATGCAAAACAACCCCCCCTCACACACACGCTCGCTCGTAGCCGGCCCTCCCTTCTTTCCGGGGCGTGTCCCGTTGCAGTCCCGTGCGCAAACACAAACAATTTCTAACTCCCGCCGCCCGCCTCTGCACACCGGCTAGCGCTCCCCTGGACGCACTAGCAAGCGTGGACGAAGGACGTATTCTAAATTAATTTATTAACCGCCAGGATCAGGTCAGGCTGTGCGCCCTTAGGGTTCTATNAGTTCTATTGTGAACGAGATATTTATAGTGAGCTCTAACATGATCCTTTCTATTTCCACAGTATGTACTACATATATANATCGGGTNTCTCAGGTCACNTAGGGTTACAGTAGGGCTTACCCAAACATATTACTATTACCCAAACAAAAAGCCGGTTTCCCCNCNCNNNCGCACCACCCACCCC] [+] EMBL AL930996 [AGAATCCCCCGAGGTTNTGCGGGCACGCCGCGGAACGGGAGTGCCCAGAGCGAGCCTAGATTAATTTAATTTATTTATGCAAAACAACCCCCCCTCACACACACGCTCGCTCGTAGCCGGCCCTCCCTTCTTTCCGGGGCGTGTCCCGTTGCAGTCCCGTGCGCAAACACAAACAATTTCTAACTCCCGCCGCCCGCCTCTGCACACCGGCTAGCGCTCCCCTGGACGCACTAGCAAGCGTGGACGAAGGACGTATTCTAAATTAATTTATTAACCGCCAGGATCAGGTCAGGCTGTGCGCCCTTAGGGTTCTATNAGTTCTATTGTGAACGAGATATTTATAGTGAGCTCTAACATGATCCTTTCTATTTCCACAGTATGTACTACATATATANATCGGGTNTCTCAGGTCACNTAGGGTTACAGTAGGGCTTACCCAAACATATTACTATTACCCAAACAAAAAGCCGGTTTCCCCNCNCNNNCGCACCACCCACCCC] consensusID : consensus_3834#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [GAATGCCCGAGGTTNTTTCAATTTTTTTGTTTGTTTGTTTGCTCCACTTTACACAACGTCCCCCCCACAAACACATCCCCACACTCAAACCCTCCGACCCGCCAATCTCTCTTCCAGTTGTTTTTTCCGTCGTACGCCCGTTAGCAGCCGTCGCCGCGCGGCCCGACTCCGGCAGAGTGGCTCGTGGGATGGCGCCTGTTAAGGGGTGGGCAACCCGGGTGGTCCACTNTTGCTTNGAATTCGGGNGCGGTNCATATCATAGGTTGGCCGGTGGCTCCCACACGCTTTAGGCCACTTGGAAACCTTTGGCACGCCCCACNTTCGGCNCCAAGAGGAAACGGGTTTTTTCCACCTTGGCGCAGGGGGTGGAACCCTTTTAAACCCGGGGNCCCTTTGGCNTTCGGCAGCCGGCGTCCTTTGGCCCCGAGAATGAGGNGAGATTTAGCCTTCTGGA] [+] EMBL AL695454 [GAATGCCCGAGGTTNTTTCAATTTTTTTGTTTGTTTGTTTGCTCCACTTTACACAACGTCCCCCCCACAAACACATCCCCACACTCAAACCCTCCGACCCGCCAATCTCTCTTCCAGTTGTTTTTTCCGTCGTACGCCCGTTAGCAGCCGTCGCCGCGCGGCCCGACTCCGGCAGAGTGGCTCGTGGGATGGCGCCTGTTAAGGGGTGGGCAACCCGGGTGGTCCACTNTTGCTTNGAATTCGGGNGCGGTNCATATCATAGGTTGGCCGGTGGCTCCCACACGCTTTAGGCCACTTGGAAACCTTTGGCACGCCCCACNTTCGGCNCCAAGAGGAAACGGGTTTTTTCCACCTTGGCGCAGGGGGTGGAACCCTTTTAAACCCGGGGNCCCTTTGGCNTTCGGCAGCCGGCGTCCTTTGGCCCCGAGAATGAGGNGAGATTTAGCCTTCTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3834#0 CGAGGTTATNGACGAAGGACGTTTTTAATTAATTTATTAACCTGCCAGGATCAGGTCAGG 60 consensus_3834#2 ------------------------------------------------------------ consensus_3834#1 --------------AGAATCCCCCGAGGTTNTGCGGGCACGCCGCGGAACGGGAGTGCCC 46 consensus_3834#0 TGTGCGCCCTTTGGGTTCTTTGTTCTTTGTGAACGAGATATTTATTGTGAGCTCTAACAT 120 consensus_3834#2 ------------------------------------------------------GAATGC 6 consensus_3834#1 AGAGCGAGCCTAGATTAATTTAATTTATTTATGCAAAACAACCCCCCCTCACACACACGC 106 * consensus_3834#0 GATCCTTTCTTTTCAATTTTTTGTCTTGTTGTTTGCTCCACTTTACACAACGTCCCCCCC 180 consensus_3834#2 CCGAGGTTNTTTCAATTTTTTTGTTTGTTTGTTTGCTCCACTTTACACAACGTCCCCCCC 66 consensus_3834#1 TCGCTCGTAGCCGGCCCTCCCTTCTTTCCGGGGCGTGTCCCGTTGCA----GTCCCGTGC 162 * * * * * * * * ** ** ***** * consensus_3834#0 ACAAA-ACATCCC-ACACTCAAACCTCCGGACCG--CAATCTCTCTTCCAGTTGTTTTT- 235 consensus_3834#2 ACAAACACATCCCCACACTCAAACCCTCCGACCCGCCAATCTCTCTTCCAGTTGTTTTTT 126 consensus_3834#1 GCAAACACAAACAATTTCTAACTCCCGCCGCCCG---CCTCTGCACACCGGCTAGCGCT- 218 **** *** * ** * ** * * ** *** ** * * * consensus_3834#0 CCGTCGTACGCCCGTTAGCAGCCGTCGCCGCCGCCGCCCCGACTCCGGACCAGAGTGGCT 295 consensus_3834#2 CCGTCGTACGCCCGTTAGCAGCCGTCGCCGC--GCGGCCCGACTCCGG--CAGAGTGGCT 182 consensus_3834#1 CCCCTGGACGCAC--TAGCAAGCGTGGACGA---AGGACGTATTCTAAATTA-ATTTATT 272 ** * **** * ***** *** * ** * * * ** * * * * consensus_3834#0 CGTGGGATGGCGCCTGTTA--GGGTGGGCAACC-GGGTG-T-CCACTTATGTATTGATTG 350 consensus_3834#2 CGTGGGATGGCGCCTGTTAAGGGGTGGGCAACCCGGGTGGT-CCACTNTTGCTTNGAAT- 240 consensus_3834#1 AACCGCCAGGATCAGGTCAGGCTGTGCGCCCTTAGGGTTCTATNAGTTCTATTGTGAACG 332 * ** * ** * *** ** **** * * * * ** consensus_3834#0 GTGGTNNATNGTGCGTGGTCCAAGTTAGCATTGAACTTGCACCCACCTCGGCCTA---AA 407 consensus_3834#2 -TCGGGNGCGGTNCATATCATAGGTTGGCCGGTGGCTCCCACACGCTTTAGGCCACTTGG 299 consensus_3834#1 -AGATATTTATAGTGAGCTCTAACATGATCCTTTCTATTTCCACAGTATGTACTACATAT 391 * * * * * * consensus_3834#0 GAAGTTTTCACTTGCCAGGTGACCTTAACCGGCCTTGCTCAGCCGTCTTGCCAGTATAGG 467 consensus_3834#2 AAACCTTTGGCACGCCCCACNTTCGGCNCCAAGAGGAAACGGGT-TTTTTCCACCTTGGC 358 consensus_3834#1 ATANATCGGGTNTCTCAGGTCACNTAGGGTTACAGTA---GGGC-TTACCCAAACATATT 447 * * * * * * * * consensus_3834#0 GTATGC--TAGATATCCTCGGGAGCTCAAACCTCATCTAATTGAGGCATCTTTCACAGCT 525 consensus_3834#2 GCAGGGGGTGGAACCCTTTTAAACCCGGGGNCCCTTTGGCNTTCGGCAGCCGGCGTCCTT 418 consensus_3834#1 AC------TATTACCCAAACAAAAAGCCGGTTTCCCCNCNCNNNCGCACCACCCACCCC- 500 * * * * *** * * consensus_3834#0 TCCAGCTG---------------------------- 533 consensus_3834#2 TGGCCCCGAGAATGAGGNGAGATTTAGCCTTCTGGA 454 consensus_3834#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||