cluster # 3835

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Anopheles gambiae
cluster # 3835 cluster # 3835 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3835#0 length = 800 sequences # 2

consensus_3835#1 length = 353 sequences # 1

consensusID : consensus_3835#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 800
fasta sequence

                              [CCGCTTCGATCCAGTTTCATCAGGGATCAAGGGGTCTTAGTGGTGATTTAAAGATCCTTGGTGTTGTGTCCCGTGATCTCAGTCGTGCTATCACTGTTGCAAGCACAGGCAGACCAAGGAAAAGAGCTTAAAGTTTAACTCTGGTAGACAAAGTGTATCACTTGTCGCGCTTTGAAGTGAATATGGTGTAGTGTTGTGAGAGTTTTTGCAACTTTTCAAAGCACACCCATACATACGCGTTCAGAATGAGTGTGCAGGGCGGCTACAAGCTAGAGCCTACGGCTAATGGCGTTGAAAGGATCGAGCATCATCATCCGTTAAAAATGCCTGTTCAAGCGAATGGAACACCCGGATCCACGGATAGAACGCCCCTGATGACGGGGATACCGAGCTATCCGAATAGTCCGGTCATGATGCGAAGATACATTGGAGACCCACCCGATGAAACGTTCGAGAATGAAAGCTACGGCGGCATGTCGGATGATTCCGATCTTGATAATCTCAAACCGCGCAAGCAGCACTGGGCGAACAAGATGCAGTTCGTGCTGGCCTGCATCGGATACTCGGTCGGGCTGGGAAATGTGTGGCGATTTCCGTATCTGTGTTACAAGAGTGGAAGGAGGTGTGTTTCTTGTGCCCTACTTCATCATTCTGCTGATCTGTGGAATACCCATGCTGTTCATGGAGCTGGCCGTCGGCCAGTATACGGGCCGCGGACCGATCGGTGCACTAGGGCAGCTCTGTCCACTGTTTAAAGGTACCGGTCTGGCGAGTGTGGTCGTTTCATTCCTAATGTCCAC]

[+] EMBL BM639458             [CCGCTTCGATCCAGTTTCATCAGGGATCAAGGGGTCTTAGTGGTGATTTAAAGATCCTTGGTGTTGTGTCCCGTGATCTCAGTCGTGCTATCACTGTTGCAAGCACAGGCAGACCAAGGAAAAGAGCTTAAAGTTTAACTCTGGTAGACAAAGTGTATCACTTGTCGCGCTTTGAAGTGAATATGGTGTAGTGTTGTGAGAGTTTTTGCAACTTTTCAAAGCACACCCATACATACGCGTTCAGAATGAGTGTGCAGGGCGGCTACAAGCTAGAGCCTACGGCTAATGGCGTTGAAAGGATCGAGCATCATCATCCGTTAAAAATGCCTGTTCAAGCGAATGGAACACCCGGATCCACGGATAGAACGCCCCTGATGACGGGGATACCGAGCTATCCGAATAGTCCGGTCATGATGCGAAGATACATTGGAGACCCACCCGATGAAACGTTCGAGAATGAAAGCTACGGCGGCATGTCGGATGATTCCGATCTTGATAATCTCAAACCGCGCAAGCAGCACTGGGCGAACAAGATGCAGTTCGTGCTGGCCTGCATCGGATACTCGGTCGGGCTGGGAAATGTGTGGCGATTTCCGTATCTGTGTTACAAGAGTGGAAGGAGGTGTGTTTCTTGTGCCCTACTTCATCATTCTGCTGATCTGTGGAATACCCATGCTGTTCAT                                                                                                                     ]
[+] EMBL BM603619             [                                                                                            ccgGTTGCAAGCACAGGCAGACCAAGGAAAAGAGCTTAAAGTTTAACTCTGGTAGACAAAGTGTATCACTTGTCGCGCTTTGAAGTGAATATGGTGTAGTGTTGTGAGAGTTTTTGCAACTTTTCAAAGCACACCCATACATACGCGTTCAGAATGAGTGTGCAGGGCGGCTACAAGCTAGAGCCTACGGCTAATGGCGTTGAAAGGATCGAGCATCATCATCCGTTAAAAATGCCTGTTCAAGCGAATGGAACACCCGGATCCACGGATAGAACGCCCCTGATGACGGGGATACCGAGCTATCCGAATAGTCCGGTCATGATGCGAAGATACATTGGAGACCCACCCGATGAAACGTACGAGAATGAAAGCTACGGCGGCATGTCGGATGATTCCGATCTTGATAATCTCAAACCGCGCAAGCAGCACTGGGCGAACAAGATGCAGTTCGTGCTGGCCTGCATCGGATACTCGGTCGGGCTGGGAAATGTGTGGCGATTTCCGTATCTGTGTTACAAGAGTGG AGGAGGTGTGTTTCTCGTGCCCTACTTCATCATTCTGCTGATCTGTGGAATACCCATGCTGTTCATGGAGCTGGCCGTCGGCCAGTATACGGGCCGCGGACCGATCGGTGCACTAGGGCAGCTCTGTCCACTGTTTAAAGGTACCGGTCTGGCGAGTGTGGTCGTTTCATTCCTAATGTCCAC]




>consensus_3835#0
CCGCTTCGATCCAGTTTCATCAGGGATCAAGGGGTCTTAGTGGTGATTTAAAGATCCTTG
GTGTTGTGTCCCGTGATCTCAGTCGTGCTATCACTGTTGCAAGCACAGGCAGACCAAGGA
AAAGAGCTTAAAGTTTAACTCTGGTAGACAAAGTGTATCACTTGTCGCGCTTTGAAGTGA
ATATGGTGTAGTGTTGTGAGAGTTTTTGCAACTTTTCAAAGCACACCCATACATACGCGT
TCAGAATGAGTGTGCAGGGCGGCTACAAGCTAGAGCCTACGGCTAATGGCGTTGAAAGGA
TCGAGCATCATCATCCGTTAAAAATGCCTGTTCAAGCGAATGGAACACCCGGATCCACGG
ATAGAACGCCCCTGATGACGGGGATACCGAGCTATCCGAATAGTCCGGTCATGATGCGAA
GATACATTGGAGACCCACCCGATGAAACGTTCGAGAATGAAAGCTACGGCGGCATGTCGG
ATGATTCCGATCTTGATAATCTCAAACCGCGCAAGCAGCACTGGGCGAACAAGATGCAGT
TCGTGCTGGCCTGCATCGGATACTCGGTCGGGCTGGGAAATGTGTGGCGATTTCCGTATC
TGTGTTACAAGAGTGGAAGGAGGTGTGTTTCTTGTGCCCTACTTCATCATTCTGCTGATC
TGTGGAATACCCATGCTGTTCATGGAGCTGGCCGTCGGCCAGTATACGGGCCGCGGACCG
ATCGGTGCACTAGGGCAGCTCTGTCCACTGTTTAAAGGTACCGGTCTGGCGAGTGTGGTC
GTTTCATTCCTAATGTCCAC

consensusID : consensus_3835#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [AGAATCGCCACGAGGTGNATCACATGAAAGTCGCTCTTGCTGCAGCTCTGTCCACTGTTTAAAGGTACCGGTCTGGCGAGTGTAGGTCGTTTCATTCCTAATGTCCACGTACTACAGTGTGATCATTGCGTATGCAATCTACTACTTCTTCACCTCGTTCCGGCCGGAGACTCCCGTGGACGGACTGTTCGCAGCCGCGTGGTAACACATCCTGGAGTGCGTGGAATACCGGGAGCGCCGTGAANGCACAAGGCTGACGCGCCCCGACTATGTCGCCGCACACCGAGCACGAGGAGTTNCTCGAAGATTACACAGTGCTTCAGGAATAAGCCACGGGCGACTTAAGTATCCGG]

[+] EMBL BX469196             [AGAATCGCCACGAGGTGNATCACATGAAAGTCGCTCTTGCTGCAGCTCTGTCCACTGTTTAAAGGTACCGGTCTGGCGAGTGTAGGTCGTTTCATTCCTAATGTCCACGTACTACAGTGTGATCATTGCGTATGCAATCTACTACTTCTTCACCTCGTTCCGGCCGGAGACTCCCGTGGACGGACTGTTCGCAGCCGCGTGGTAACACATCCTGGAGTGCGTGGAATACCGGGAGCGCCGTGAANGCACAAGGCTGACGCGCCCCGACTATGTCGCCGCACACCGAGCACGAGGAGTTNCTCGAAGATTACACAGTGCTTCAGGAATAAGCCACGGGCGACTTAAGTATCCGG]




>consensus_3835#1
AGAATCGCCACGAGGTGNATCACATGAAAGTCGCTCTTGCTGCAGCTCTGTCCACTGTTT
AAAGGTACCGGTCTGGCGAGTGTAGGTCGTTTCATTCCTAATGTCCACGTACTACAGTGT
GATCATTGCGTATGCAATCTACTACTTCTTCACCTCGTTCCGGCCGGAGACTCCCGTGGA
CGGACTGTTCGCAGCCGCGTGGTAACACATCCTGGAGTGCGTGGAATACCGGGAGCGCCG
TGAANGCACAAGGCTGACGCGCCCCGACTATGTCGCCGCACACCGAGCACGAGGAGTTNC
TCGAAGATTACACAGTGCTTCAGGAATAAGCCACGGGCGACTTAAGTATCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3835#0      CCGCTTCGATCCAGTTTCATCAGGGATCAAGGGGTCTTAGTGGTGATTTAAAGATCCTTG 60
consensus_3835#1      ------------------------------------------------------------
                                                                                  

consensus_3835#0      GTGTTGTGTCCCGTGATCTCAGTCGTGCTATCACTGTTGCAAGCACAGGCAGACCAAGGA 120
consensus_3835#1      --------------------------------------------AGAATCGCCACGAGGT 16
                                                                  * *  *    * *** 

consensus_3835#0      AAAGAGCTTAAAGTTTAACTCTGGTAGACAAAGTGTATCACTTGTCGCGCTTTGAAGTGA 180
consensus_3835#1      GNATCACATGAAAGTCG-CTCTTGC--------TGCAGCTCTGTCCACTGTTTAAAGGTA 67
                        *   * * **  *   **** *         ** * * **   * *  *** ***  *

consensus_3835#0      ATATGGTGTAGTGTTGTGAGAGTTTTTGCAACTTTTCAAAGCACACCCATACATACGCGT 240
consensus_3835#1      CC--GGTCTGGCGA-GTGTAGGTCGTTTCA--TTCCTAATGTCCACGTACTACAGTGTGA 122
                          *** * * *  ***   **  ** **  **   ** *  ***  *       * * 

consensus_3835#0      TCAGAATGAGTGTGCAGGGCGGCTACAAGCTAGAGCC--TACGGCTAATGGCGTTGAAAG 298
consensus_3835#1      TCAT--TGCGTATGCAAT-CTACTACTTCTTCACCTCGTTCCGGCCGGAGAC-TCCCGTG 178
                      ***   ** ** ****   *  ****    *     *  * ****    * * *     *

consensus_3835#0      GATCGAGCATCATCATCCGT-TAAAAATGCCTGTTCAAGCGAATGGAACACCCGGATCCA 357
consensus_3835#1      GACGGACTGTTCGCAGCCGCGTGGTAACACATCCTGGAGTGCGTGGAATACCGGGAGCGC 238
                      **  **   *   ** ***  *   **  * *  *  ** *  ***** *** *** *  

consensus_3835#0      CG-GATAGAACGCCCCTGATGACGGGGATACCGAGCTATCCGAATAGTCCGGTCATGATG 416
consensus_3835#1      CGTGAANGCACAAGGCTGACG-CGCCCCGACTATGTCG-CCGCACA--CCGAGCACGA-- 292
                      ** **  * **    **** * **     **   *    *** * *  ***  ** **  

consensus_3835#0      CGAAGATACATTGGAGACCCACCCGATGAAACGTTCGAGAATGAAAGCTACGGCGGCATG 476
consensus_3835#1      -GGAGTTNC-TCGAAGATT-ACACAGTGC----TTCAGGAAT--AAGCCACGG--GCGAC 341
                       * ** * * * * ***   ** *  **     ***  ****  **** ****  **   

consensus_3835#0      TCGGATGATTCCGATCTTGATAATCTCAAACCGCGCAAGCAGCACTGGGCGAACAAGATG 536
consensus_3835#1      TTAAGTA--TCCGG---------------------------------------------- 353
                      *    *   ****                                               

consensus_3835#0      CAGTTCGTGCTGGCCTGCATCGGATACTCGGTCGGGCTGGGAAATGTGTGGCGATTTCCG 596
consensus_3835#1      ------------------------------------------------------------
                                                                                  

consensus_3835#0      TATCTGTGTTACAAGAGTGGAAGGAGGTGTGTTTCTTGTGCCCTACTTCATCATTCTGCT 656
consensus_3835#1      ------------------------------------------------------------
                                                                                  

consensus_3835#0      GATCTGTGGAATACCCATGCTGTTCATGGAGCTGGCCGTCGGCCAGTATACGGGCCGCGG 716
consensus_3835#1      ------------------------------------------------------------
                                                                                  

consensus_3835#0      ACCGATCGGTGCACTAGGGCAGCTCTGTCCACTGTTTAAAGGTACCGGTCTGGCGAGTGT 776
consensus_3835#1      ------------------------------------------------------------
                                                                                  

consensus_3835#0      GGTCGTTTCATTCCTAATGTCCAC 800
consensus_3835#1      ------------------------