These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1114 fasta sequence [CAAGAATTCCCGAGGTTAAAAGAGATGTTACTTGAAGGAACGGTCTGTTTTGGTTTATCGAAGTGTACTCTGTAAATGGTAAAATATATATATACGAGAGAGTACTGAATACTAGTAGCTAAGTGTGTATGTGTATGTACTATATTNGTATGCATGGTATACGTATAACTTCCTGCGCAAACGTACATGGGATGGAAAACCTGTGTGATTCTTGCAGNTCTTATCGGTATAGAGTNCCGTCCANAAGCTAGAGCACTTNNCTCGGATGGGACGTGTTCNTCTTGTGATGCGCTGGTATGATCGGCTGATGAATTTATACACGTGATTCGGGCCCTTAAGTTGGATTGAGAGATTGTACGGCATATGGGNNTACAAAGGCATNAACTATAACTAACGAAAAAAGAGGATTGNCTTCCACNGGATAAACATACCCCAATTCAAATAACAACCTANTCGCAACNCCACCGAAAACGAGGGCCCCCAGCGACATACCAGGANTAGGGCCGGAAGCGACACATAGCANAANAGTGCAAACCCCAAGNCAACCAGAAAAGAAAACAGATCAAAACGCAAATCNACAACACNATGGAACGGAAAGNNAAGACAAATATAACAACCATACGCCGANTGTGGACNNAATGAAANGACACNNCCCCNCCGCNCACCGGCACCCAACATCCCGCANCCANNCCNCAAACCCCCACGACGNCANNACCACNAAGCACAACCCAAGGCCAATCNAGCNCCGAGACAAANCATNCAACAACCAGCCCACANGGACANCCNACACTGACGGCTTCGCCCATATGGCACAGCCCACANTGGAAACCAACTNCCAAACGAGGACATGAGGNAGAGGCACCCTGGGACAGCATAGAGCCNANTGAGAGATGAGAAAACGANGGACCAAACNAGCGCAGCATNCACGCAAAAACNCTCGTNCACCCAAACACANGNGGANCNACCCGACANATNGGGCCCATGACACNCGAACCCGANAGGCACCGCNCCCGAAAGAANCAAATGGAAACCGCAATGGAGCCACCAGGACANTCCCCCCCCGCGANCCCACCCCCCACACCCCCACCAACAACACCCCACNCACGNACCANGC] [+] EMBL AL694942 [CAAGAATTCCCGAGGTTAAAAGAGATGTTACTTGAAGGAACGGTCTGTTTTGGTTTATCGAAGTGTACTCTGTAAATGGTAAAATATATATATACGAGAGAGTACTGAATACTAGTAGCTAAGTGTGTATGTGTATGTACTATATTNGTATGCATGGTATACGTATAACTTCCTGCGCAAACGTACATGGGATGGAAAACCTGTGTGATTCTTGCAGNTCTTATCGGTATAGAGTNCCGTCCANAAGCTAGAGCACTTNNCTCGGATGGGACGTGTTCNTCTTGTGATGCGCTGGTATGATCGGCTGATGAATTTATACACGTGATTCGGGCCCTTAAGTTGGATTGAGAGATTGTACGGCATATGGGNNTACAAAGGCATNAACTATAACTAACGAAAAAAGAGGATTGNCTTCCACNGGATAAACATACCCCAATTCAAATAACAACCTANTCGCAACNCCACCGAAAACGAGGGCCCCCAGCGACATACCAGGANTAGGGCCGGAAGCGACACATAGCANAANAGTGCAAACCCCAAGNCAACCAGAAAAGAAAACAGATCAAAACGCAAATCNACAACACNATGGAACGGAAAGNNAAGACAAATATAACAACCATACGCCGANTGTGGACNNAATGAAANGACACNNCCCCNCCGCNCACCGGCACCCAACATCCCGCANCCANNCCNCAAACCCCCACGACGNCANNACCACNAAGCACAACCCAAGGCCAATCNAGCNCCGAGACAAANCATNCAACAACCAGCCCACANGGACANCCNACACTGACGGCTTCGCCCATATGGCACAGCCCACANTGGAAACCAACTNCCAAACGAGGACATGAGGNAGAGGCACCCTGGGACAGCATAGAGCCNANTGAGAGATGAGAAAACGANGGACCAAACNAGCGCAGCATNCACGCAAAAACNCTCGTNCACCCAAACACANGNGGANCNACCCGACANATNGGGCCCATGACACNCGAACCCGANAGGCACCGCNCCCGAAAGAANCAAATGGAAACCGCAATGGAGCCACCAGGACANTCCCCCCCCGCGANCCCACCCCCCACACCCCCACCAACAACACCCCACNCACGNACCANGC] consensusID : consensus_3850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CACCGTTCCAGAGCCCGGTCATCCCTAGCCGCACCTTTCCGACGCTGGCCGGTGCCGCGGCAACACTGAACGGAGCGGCCACCGACGGGCGGGATGACTCAGGCAACGGCACGATGAAACCGGAGCGTAGCAGCAAGGTTTACTTCATCGAGCAGGGCCAGCTGCAGACGGACTACGAGCTGCCGGAACGGCCAGGGCAGCCGGCGCGTGGTGCCAGCCTGAACAGTGGCATTGTGAATCCTGCCTTCACCAACGACGCCGGCGCCACCGTGATAAACATGTCCAGCACACAACCCAGCGTTATACGCGAACAGTACTGGACGTGGTCGTGTCGATGCCGGCGGGAGCTCACCCCACGCGAGAAAGCTCTGCTCATTGTGATCTTTATTCTGGTGCTGGTCATTGGAGGGCTCGCAACGTACCTGGGCATTGTGGTGGATAGTGATGATGGGATTACTGGAGGCATCCTTACGAGAAGTATGCTTGAACCAGCGACAACCCATCAGTAGGGCCGATCAGTGATAATCATCAGCCGATCATACCGCGCATCACAGAAACACGTCCCATCGAGAAAGTGCTCTAGCTTAAAACGGAACTCTATACCGATAAGACTGCAGAATCACACAGGGTTTTCCATCCCATGAC] [+] EMBL BX610074 [CACCGTTCCAGAGCCCGGTCATCCCTAGCCGCACCTTTCCGACGCTGGCCGGTGCCGCGGCAACACTGAACGGAGCGGCCACCGACGGGCGGGATGACTCAGGCAACGGCACGATGAAACCGGAGCGTAGCAGCAAGGTTTACTTCATCGAGCAGGGCCAGCTGCAGACGGACTACGAGCTGCCGGAACGGCCAGGGCAGCCGGCGCGTGGTGCCAGCCTGAACAGTGGCATTGTGAATCCTGCCTTCACCAACGACGCCGGCGCCACCGTGATAAACATGTCCAGCACACAACCCAGCGTTATACGCGAACAGTACTGGACGTGGTCGTGTCGATGCCGGCGGGAGCTCACCCCACGCGAGAAAGCTCTGCTCATTGTGATCTTTATTCTGGTGCTGGTCATTGGAGGGCTCGCAACGTACCTGGGCATTGTGGTGGATAGTGATGATGGGATTACTGGAGGCATCCTTACGAGAAGTATGCTTGAACCAGCGACAACCCATCAGTAGGGCCGATCAGTGATAATCATCAGCCGATCATACCGCGCATCACAGAAACACGTCCCATCGAGAAAGTGCTCTAGCTTAAAACGGAACTCTATACCGATAAGACTGCAGAATCACACAGGGTTTTCCATCCCATGAC] consensusID : consensus_3850#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [GGAACCGGCCTGTTCCGGTTTATCGAAGTGTACTCTGTAAACTGGCTAAAAAATATATCTATCGAGAGACGTACGAATACTAGTAGCTAAGTGTGTCGGTGTATGTACTTTTGTATGCCATGCGTTCGTATAACTTCCGCCGCAAACGTCATGGGATGGAAAACCTGTGTGATTCTGCAGTCTTATCGGTATAGAGTTCCGTTTTAAGCTAGAGCACTTTCTCGATGGAACGTGTTTCTGTGATGCGTGGTATGATCGGCTGATGATTATCACTGATCGGCCCTACTGATGGGTTGTCGCTGGTTCAAGCATACTTCTCGTAAGGATGCCTCCAGTAATCCCATCATCACTATCCACCACAATGCCCAGGTACGTTGCGAGCCCTCCAATGACCAGCACCAGAATAAAGATCACAATGAGCAGAGCTTTCTCGCGTGGGGTGAGCTCCCGCCGGCATCGACACGACCACGTCCAGTACTGTTCGCGTATAACGCTGCAAAGAGCAAGAAGAAGAAAGATGCATCAATTTATCAGACGTGAAGGTGAATCATCTTCTCGGCGCTGATTTGGGTCAGACCCAATGTGAATGTCCACAGACGG] [-] EMBL BM626065 [GGAACCGGCCTGTTCCGGTTTATCGAAGTGTACTCTGTAAACTGGCTAAAAAATATATCTATCGAGAGACGTACGAATACTAGTAGCTAAGTGTGTCGGTGTATGTACTTTTGTATGCCATGCGTTCGTATAACTTCCGCCGCAAACGTCATGGGATGGAAAACCTGTGTGATTCTGCAGTCTTATCGGTATAGAGTTCCGTTTTAAGCTAGAGCACTTTCTCGATGGAACGTGTTTCTGTGATGCGTGGTATGATCGGCTGATGATTATCACTGATCGGCCCTACTGATGGGTTGTCGCTGGTTCAAGCATACTTCTCGTAAGGATGCCTCCAGTAATCCCATCATCACTATCCACCACAATGCCCAGGTACGTTGCGAGCCCTCCAATGACCAGCACCAGAATAAAGATCACAATGAGCAGAGCTTTCTCGCGTGGGGTGAGCTCCCGCCGGCATCGACACGACCACGTCCAGTACTGTTCGCGTATAACGCTGCAAAGAGCAAGAAGAAGAAAGATGCATCAATTTATCAGACGTGAAGGTGAATCATCTTCTCGGCGCTGATTTGGGTCAGACCCAATGTGAATGTCCACAGACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3850#0 CAAGAATTCCCGAGGTTAAAAGAGATGTTACTTGAAGGAACGGTCTGTTTTGGTTTATCG 60 consensus_3850#2 -----------------------------------GGAACCGGCCTGTTCCGGTTTATCG 25 consensus_3850#1 -------------------------CACCGTTCCAGAGCCCGGTCATCCCTAGCCGCACC 35 *** * * * consensus_3850#0 AAGTGTACTCTGTAAATGG--TAAAATATATATATA-CGAGAGAGTACTGAATACTAGTA 117 consensus_3850#2 AAGTGTACTCTGTAAACTGGCTAAAAAATATATCTATCGAGAGACGTACGAATACTAGTA 85 consensus_3850#1 TTTCCGACGCTGGCCGGTGCCGCGGCAACAC-TGAACGGAGCGGCCACCGACGGGCGG-- 92 ** *** * * * * * *** * ** * consensus_3850#0 GCTAAGTGTGTATGTGTATGTACTATATTNGTATGCATGGTATACGTATAACTTCCTGCG 177 consensus_3850#2 GCTAAGTGTGTCGGTGTATGTACT---TTTGTATGCCATGCGTTCGTATAACTTCCGCCG 142 consensus_3850#1 GATGACTCAGGCAACG-GCACGATGAAACCGGA-GCGTAGCAGCAAGGTTTACTTCATCG 150 * * * * * * * * * ** * * * * ** consensus_3850#0 CAAACGTACATGGGATGGAAAACCTGTGTGATTCTTGCAGNTCTTATCGGTATAGAGTNC 237 consensus_3850#2 CAAACGT-CATGGGATGGAAAACCTGTGTGATTCT-GCAGT-CTTATCGGTATAGAGTTC 199 consensus_3850#1 AGCAGGGCCA-GCTGCAGACGGACTACGAGCTGCCGGAACGGCCAG--GGCAGCCGGCGC 207 * * ** * ** ** * * * * * * * ** * * * consensus_3850#0 CGTCCANAAGCTAGAGCACTTNNCTCGGATGGGACGTGT-TCNTCTTGTGATGCGCTGGT 296 consensus_3850#2 CGTTT-TAAGCTAGAGCACTTTCTC--GATGGAACGTGT-TTC---TGTGATGCG-TGGT 251 consensus_3850#1 GTGGTGCCAGCCTGAACAGTGGCAT--TGTGAATCCTGCCTTCACCAACGACGC--CGGC 263 *** ** ** * ** * ** * ** ** ** consensus_3850#0 ATGATCG-GCTGATGAATTTATACACGTGATTCGGGCCCTTAAGTTGGATTG-AGAGATT 354 consensus_3850#2 ATGATCG-GCTGATGA--TTAT-CAC-TGATC--GGCCCT--------ACTG-ATGGGTT 295 consensus_3850#1 GCCACCGTGATAAACATGTCCAGCACACAACCC-AGCGTTATACGCGAACAGTACTGGAC 322 * ** * * * * * *** * ** * * * * * consensus_3850#0 GTACGGCATATGGGNNTACAAAGGCATNAACTATAACTAACGAAAAAAGAGGATTGNCTT 414 consensus_3850#2 GT--------CGCTGGT---------TCAAGCATACTTCTCGTAAGGATGCCTCCAGTAA 338 consensus_3850#1 GTGGTCGTGTCGATGCC------GGCGGGAGCTCACCCCACGCGAGAAAGCTCTGCTCAT 376 ** * * * ** * * consensus_3850#0 CCACNGGATAAACATACCCCAATTCAAATAACAACCTANTCGCAACNCCACCGAAAACGA 474 consensus_3850#2 TCCCATCATCACTATCCACCA---CAATGCCCAGGTACGTTGCGAGCCCTCCAATGACCA 395 consensus_3850#1 TGTGATCTTTATTCTGGTGC----TGGTCATTGGAGGGCTCGCAACGTACCTGGGCATTG 432 * * * * * ** * * * consensus_3850#0 GGGCCCCCAGCGACATACCAGGANTAGGGCCGGAAGCGACACATAGCANAANAGTGCAAA 534 consensus_3850#2 G------CACCAGAATA--AAGATCACAATGAGCAGAGCTTTCTCGCGTGGG-GTGAGCT 446 consensus_3850#1 TGGTGGATAGTG--ATGATGGGATTACTGGAGGCATCCTTACGAGAAGTATGCTTGAACC 490 * ** ** * * * ** consensus_3850#0 CCCCAAGNCAACCAGAAAAGAAAA--CAGATCAAAACGCAAATCNACAACACNATGGAAC 592 consensus_3850#2 CCCGCCGGCATC--GACACGACCA--CGTCCAGTACTGTTCGCGTATAACGCTGCAAAGA 502 consensus_3850#1 AGCGACAACCCATCAGTAGGGCCGATCAGTGATAATCATCAGCCGATCATACCGCGCATC 550 * * * * * * * * * * consensus_3850#0 GGAAAGNNAAGACAAATATAACAACCATACGCCGANTGTGGACNNAATGAAANGACACNN 652 consensus_3850#2 GCAAGAAGAAGAAAGATGCATCAATT---------TATCAGACGTGAAGGTGAATCATCT 553 consensus_3850#1 ACAGAAACACGTCCCATCGAGAAAGT---------GCTCTAGCTTAAA-ACGGAACTCTA 600 * * * ** * ** * * * consensus_3850#0 CCCCNCCGCNCACCGGCACCCAACATCCCGCANCCANNCCNCAAACCCCCACGACGNCAN 712 consensus_3850#2 TCTCGGCGCTGATTTGGGTCAGACCCAATGTGAAT-GTCCACAGACGG------------ 600 consensus_3850#1 TACCGATA-AGACTGCAGAATCACACAGGGTTTTCCATCCCATGAC-------------- 645 * * ** * ** ** consensus_3850#0 NACCACNAAGCACAACCCAAGGCCAATCNAGCNCCGAGACAAANCATNCAACAACCAGCC 772 consensus_3850#2 ------------------------------------------------------------ consensus_3850#1 ------------------------------------------------------------ consensus_3850#0 CACANGGACANCCNACACTGACGGCTTCGCCCATATGGCACAGCCCACANTGGAAACCAA 832 consensus_3850#2 ------------------------------------------------------------ consensus_3850#1 ------------------------------------------------------------ consensus_3850#0 CTNCCAAACGAGGACATGAGGNAGAGGCACCCTGGGACAGCATAGAGCCNANTGAGAGAT 892 consensus_3850#2 ------------------------------------------------------------ consensus_3850#1 ------------------------------------------------------------ consensus_3850#0 GAGAAAACGANGGACCAAACNAGCGCAGCATNCACGCAAAAACNCTCGTNCACCCAAACA 952 consensus_3850#2 ------------------------------------------------------------ consensus_3850#1 ------------------------------------------------------------ consensus_3850#0 CANGNGGANCNACCCGACANATNGGGCCCATGACACNCGAACCCGANAGGCACCGCNCCC 1012 consensus_3850#2 ------------------------------------------------------------ consensus_3850#1 ------------------------------------------------------------ consensus_3850#0 GAAAGAANCAAATGGAAACCGCAATGGAGCCACCAGGACANTCCCCCCCCGCGANCCCAC 1072 consensus_3850#2 ------------------------------------------------------------ consensus_3850#1 ------------------------------------------------------------ consensus_3850#0 CCCCCACACCCCCACCAACAACACCCCACNCACGNACCANGC 1114 consensus_3850#2 ------------------------------------------ consensus_3850#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||