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Anopheles gambiae
cluster # 3850 cluster # 3850       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3850#0 length = 1114 sequences # 1  
consensus_3850#1 length = 645 sequences # 1  
consensus_3850#2 length = 600 sequences # 1  

consensusID : consensus_3850#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1114
fasta sequence
                              [CAAGAATTCCCGAGGTTAAAAGAGATGTTACTTGAAGGAACGGTCTGTTTTGGTTTATCGAAGTGTACTCTGTAAATGGTAAAATATATATATACGAGAGAGTACTGAATACTAGTAGCTAAGTGTGTATGTGTATGTACTATATTNGTATGCATGGTATACGTATAACTTCCTGCGCAAACGTACATGGGATGGAAAACCTGTGTGATTCTTGCAGNTCTTATCGGTATAGAGTNCCGTCCANAAGCTAGAGCACTTNNCTCGGATGGGACGTGTTCNTCTTGTGATGCGCTGGTATGATCGGCTGATGAATTTATACACGTGATTCGGGCCCTTAAGTTGGATTGAGAGATTGTACGGCATATGGGNNTACAAAGGCATNAACTATAACTAACGAAAAAAGAGGATTGNCTTCCACNGGATAAACATACCCCAATTCAAATAACAACCTANTCGCAACNCCACCGAAAACGAGGGCCCCCAGCGACATACCAGGANTAGGGCCGGAAGCGACACATAGCANAANAGTGCAAACCCCAAGNCAACCAGAAAAGAAAACAGATCAAAACGCAAATCNACAACACNATGGAACGGAAAGNNAAGACAAATATAACAACCATACGCCGANTGTGGACNNAATGAAANGACACNNCCCCNCCGCNCACCGGCACCCAACATCCCGCANCCANNCCNCAAACCCCCACGACGNCANNACCACNAAGCACAACCCAAGGCCAATCNAGCNCCGAGACAAANCATNCAACAACCAGCCCACANGGACANCCNACACTGACGGCTTCGCCCATATGGCACAGCCCACANTGGAAACCAACTNCCAAACGAGGACATGAGGNAGAGGCACCCTGGGACAGCATAGAGCCNANTGAGAGATGAGAAAACGANGGACCAAACNAGCGCAGCATNCACGCAAAAACNCTCGTNCACCCAAACACANGNGGANCNACCCGACANATNGGGCCCATGACACNCGAACCCGANAGGCACCGCNCCCGAAAGAANCAAATGGAAACCGCAATGGAGCCACCAGGACANTCCCCCCCCGCGANCCCACCCCCCACACCCCCACCAACAACACCCCACNCACGNACCANGC]

[+] EMBL AL694942             [CAAGAATTCCCGAGGTTAAAAGAGATGTTACTTGAAGGAACGGTCTGTTTTGGTTTATCGAAGTGTACTCTGTAAATGGTAAAATATATATATACGAGAGAGTACTGAATACTAGTAGCTAAGTGTGTATGTGTATGTACTATATTNGTATGCATGGTATACGTATAACTTCCTGCGCAAACGTACATGGGATGGAAAACCTGTGTGATTCTTGCAGNTCTTATCGGTATAGAGTNCCGTCCANAAGCTAGAGCACTTNNCTCGGATGGGACGTGTTCNTCTTGTGATGCGCTGGTATGATCGGCTGATGAATTTATACACGTGATTCGGGCCCTTAAGTTGGATTGAGAGATTGTACGGCATATGGGNNTACAAAGGCATNAACTATAACTAACGAAAAAAGAGGATTGNCTTCCACNGGATAAACATACCCCAATTCAAATAACAACCTANTCGCAACNCCACCGAAAACGAGGGCCCCCAGCGACATACCAGGANTAGGGCCGGAAGCGACACATAGCANAANAGTGCAAACCCCAAGNCAACCAGAAAAGAAAACAGATCAAAACGCAAATCNACAACACNATGGAACGGAAAGNNAAGACAAATATAACAACCATACGCCGANTGTGGACNNAATGAAANGACACNNCCCCNCCGCNCACCGGCACCCAACATCCCGCANCCANNCCNCAAACCCCCACGACGNCANNACCACNAAGCACAACCCAAGGCCAATCNAGCNCCGAGACAAANCATNCAACAACCAGCCCACANGGACANCCNACACTGACGGCTTCGCCCATATGGCACAGCCCACANTGGAAACCAACTNCCAAACGAGGACATGAGGNAGAGGCACCCTGGGACAGCATAGAGCCNANTGAGAGATGAGAAAACGANGGACCAAACNAGCGCAGCATNCACGCAAAAACNCTCGTNCACCCAAACACANGNGGANCNACCCGACANATNGGGCCCATGACACNCGAACCCGANAGGCACCGCNCCCGAAAGAANCAAATGGAAACCGCAATGGAGCCACCAGGACANTCCCCCCCCGCGANCCCACCCCCCACACCCCCACCAACAACACCCCACNCACGNACCANGC]


>consensus_3850#0 CAAGAATTCCCGAGGTTAAAAGAGATGTTACTTGAAGGAACGGTCTGTTTTGGTTTATCG AAGTGTACTCTGTAAATGGTAAAATATATATATACGAGAGAGTACTGAATACTAGTAGCT AAGTGTGTATGTGTATGTACTATATTNGTATGCATGGTATACGTATAACTTCCTGCGCAA ACGTACATGGGATGGAAAACCTGTGTGATTCTTGCAGNTCTTATCGGTATAGAGTNCCGT CCANAAGCTAGAGCACTTNNCTCGGATGGGACGTGTTCNTCTTGTGATGCGCTGGTATGA TCGGCTGATGAATTTATACACGTGATTCGGGCCCTTAAGTTGGATTGAGAGATTGTACGG CATATGGGNNTACAAAGGCATNAACTATAACTAACGAAAAAAGAGGATTGNCTTCCACNG GATAAACATACCCCAATTCAAATAACAACCTANTCGCAACNCCACCGAAAACGAGGGCCC CCAGCGACATACCAGGANTAGGGCCGGAAGCGACACATAGCANAANAGTGCAAACCCCAA GNCAACCAGAAAAGAAAACAGATCAAAACGCAAATCNACAACACNATGGAACGGAAAGNN AAGACAAATATAACAACCATACGCCGANTGTGGACNNAATGAAANGACACNNCCCCNCCG CNCACCGGCACCCAACATCCCGCANCCANNCCNCAAACCCCCACGACGNCANNACCACNA AGCACAACCCAAGGCCAATCNAGCNCCGAGACAAANCATNCAACAACCAGCCCACANGGA CANCCNACACTGACGGCTTCGCCCATATGGCACAGCCCACANTGGAAACCAACTNCCAAA CGAGGACATGAGGNAGAGGCACCCTGGGACAGCATAGAGCCNANTGAGAGATGAGAAAAC GANGGACCAAACNAGCGCAGCATNCACGCAAAAACNCTCGTNCACCCAAACACANGNGGA NCNACCCGACANATNGGGCCCATGACACNCGAACCCGANAGGCACCGCNCCCGAAAGAAN CAAATGGAAACCGCAATGGAGCCACCAGGACANTCCCCCCCCGCGANCCCACCCCCCACA CCCCCACCAACAACACCCCACNCACGNACCANGC



consensusID : consensus_3850#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence
                              [CACCGTTCCAGAGCCCGGTCATCCCTAGCCGCACCTTTCCGACGCTGGCCGGTGCCGCGGCAACACTGAACGGAGCGGCCACCGACGGGCGGGATGACTCAGGCAACGGCACGATGAAACCGGAGCGTAGCAGCAAGGTTTACTTCATCGAGCAGGGCCAGCTGCAGACGGACTACGAGCTGCCGGAACGGCCAGGGCAGCCGGCGCGTGGTGCCAGCCTGAACAGTGGCATTGTGAATCCTGCCTTCACCAACGACGCCGGCGCCACCGTGATAAACATGTCCAGCACACAACCCAGCGTTATACGCGAACAGTACTGGACGTGGTCGTGTCGATGCCGGCGGGAGCTCACCCCACGCGAGAAAGCTCTGCTCATTGTGATCTTTATTCTGGTGCTGGTCATTGGAGGGCTCGCAACGTACCTGGGCATTGTGGTGGATAGTGATGATGGGATTACTGGAGGCATCCTTACGAGAAGTATGCTTGAACCAGCGACAACCCATCAGTAGGGCCGATCAGTGATAATCATCAGCCGATCATACCGCGCATCACAGAAACACGTCCCATCGAGAAAGTGCTCTAGCTTAAAACGGAACTCTATACCGATAAGACTGCAGAATCACACAGGGTTTTCCATCCCATGAC]

[+] EMBL BX610074             [CACCGTTCCAGAGCCCGGTCATCCCTAGCCGCACCTTTCCGACGCTGGCCGGTGCCGCGGCAACACTGAACGGAGCGGCCACCGACGGGCGGGATGACTCAGGCAACGGCACGATGAAACCGGAGCGTAGCAGCAAGGTTTACTTCATCGAGCAGGGCCAGCTGCAGACGGACTACGAGCTGCCGGAACGGCCAGGGCAGCCGGCGCGTGGTGCCAGCCTGAACAGTGGCATTGTGAATCCTGCCTTCACCAACGACGCCGGCGCCACCGTGATAAACATGTCCAGCACACAACCCAGCGTTATACGCGAACAGTACTGGACGTGGTCGTGTCGATGCCGGCGGGAGCTCACCCCACGCGAGAAAGCTCTGCTCATTGTGATCTTTATTCTGGTGCTGGTCATTGGAGGGCTCGCAACGTACCTGGGCATTGTGGTGGATAGTGATGATGGGATTACTGGAGGCATCCTTACGAGAAGTATGCTTGAACCAGCGACAACCCATCAGTAGGGCCGATCAGTGATAATCATCAGCCGATCATACCGCGCATCACAGAAACACGTCCCATCGAGAAAGTGCTCTAGCTTAAAACGGAACTCTATACCGATAAGACTGCAGAATCACACAGGGTTTTCCATCCCATGAC]


>consensus_3850#1 CACCGTTCCAGAGCCCGGTCATCCCTAGCCGCACCTTTCCGACGCTGGCCGGTGCCGCGG CAACACTGAACGGAGCGGCCACCGACGGGCGGGATGACTCAGGCAACGGCACGATGAAAC CGGAGCGTAGCAGCAAGGTTTACTTCATCGAGCAGGGCCAGCTGCAGACGGACTACGAGC TGCCGGAACGGCCAGGGCAGCCGGCGCGTGGTGCCAGCCTGAACAGTGGCATTGTGAATC CTGCCTTCACCAACGACGCCGGCGCCACCGTGATAAACATGTCCAGCACACAACCCAGCG TTATACGCGAACAGTACTGGACGTGGTCGTGTCGATGCCGGCGGGAGCTCACCCCACGCG AGAAAGCTCTGCTCATTGTGATCTTTATTCTGGTGCTGGTCATTGGAGGGCTCGCAACGT ACCTGGGCATTGTGGTGGATAGTGATGATGGGATTACTGGAGGCATCCTTACGAGAAGTA TGCTTGAACCAGCGACAACCCATCAGTAGGGCCGATCAGTGATAATCATCAGCCGATCAT ACCGCGCATCACAGAAACACGTCCCATCGAGAAAGTGCTCTAGCTTAAAACGGAACTCTA TACCGATAAGACTGCAGAATCACACAGGGTTTTCCATCCCATGAC



consensusID : consensus_3850#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence
                              [GGAACCGGCCTGTTCCGGTTTATCGAAGTGTACTCTGTAAACTGGCTAAAAAATATATCTATCGAGAGACGTACGAATACTAGTAGCTAAGTGTGTCGGTGTATGTACTTTTGTATGCCATGCGTTCGTATAACTTCCGCCGCAAACGTCATGGGATGGAAAACCTGTGTGATTCTGCAGTCTTATCGGTATAGAGTTCCGTTTTAAGCTAGAGCACTTTCTCGATGGAACGTGTTTCTGTGATGCGTGGTATGATCGGCTGATGATTATCACTGATCGGCCCTACTGATGGGTTGTCGCTGGTTCAAGCATACTTCTCGTAAGGATGCCTCCAGTAATCCCATCATCACTATCCACCACAATGCCCAGGTACGTTGCGAGCCCTCCAATGACCAGCACCAGAATAAAGATCACAATGAGCAGAGCTTTCTCGCGTGGGGTGAGCTCCCGCCGGCATCGACACGACCACGTCCAGTACTGTTCGCGTATAACGCTGCAAAGAGCAAGAAGAAGAAAGATGCATCAATTTATCAGACGTGAAGGTGAATCATCTTCTCGGCGCTGATTTGGGTCAGACCCAATGTGAATGTCCACAGACGG]

[-] EMBL BM626065             [GGAACCGGCCTGTTCCGGTTTATCGAAGTGTACTCTGTAAACTGGCTAAAAAATATATCTATCGAGAGACGTACGAATACTAGTAGCTAAGTGTGTCGGTGTATGTACTTTTGTATGCCATGCGTTCGTATAACTTCCGCCGCAAACGTCATGGGATGGAAAACCTGTGTGATTCTGCAGTCTTATCGGTATAGAGTTCCGTTTTAAGCTAGAGCACTTTCTCGATGGAACGTGTTTCTGTGATGCGTGGTATGATCGGCTGATGATTATCACTGATCGGCCCTACTGATGGGTTGTCGCTGGTTCAAGCATACTTCTCGTAAGGATGCCTCCAGTAATCCCATCATCACTATCCACCACAATGCCCAGGTACGTTGCGAGCCCTCCAATGACCAGCACCAGAATAAAGATCACAATGAGCAGAGCTTTCTCGCGTGGGGTGAGCTCCCGCCGGCATCGACACGACCACGTCCAGTACTGTTCGCGTATAACGCTGCAAAGAGCAAGAAGAAGAAAGATGCATCAATTTATCAGACGTGAAGGTGAATCATCTTCTCGGCGCTGATTTGGGTCAGACCCAATGTGAATGTCCACAGACGG]


>consensus_3850#2 GGAACCGGCCTGTTCCGGTTTATCGAAGTGTACTCTGTAAACTGGCTAAAAAATATATCT ATCGAGAGACGTACGAATACTAGTAGCTAAGTGTGTCGGTGTATGTACTTTTGTATGCCA TGCGTTCGTATAACTTCCGCCGCAAACGTCATGGGATGGAAAACCTGTGTGATTCTGCAG TCTTATCGGTATAGAGTTCCGTTTTAAGCTAGAGCACTTTCTCGATGGAACGTGTTTCTG TGATGCGTGGTATGATCGGCTGATGATTATCACTGATCGGCCCTACTGATGGGTTGTCGC TGGTTCAAGCATACTTCTCGTAAGGATGCCTCCAGTAATCCCATCATCACTATCCACCAC AATGCCCAGGTACGTTGCGAGCCCTCCAATGACCAGCACCAGAATAAAGATCACAATGAG CAGAGCTTTCTCGCGTGGGGTGAGCTCCCGCCGGCATCGACACGACCACGTCCAGTACTG TTCGCGTATAACGCTGCAAAGAGCAAGAAGAAGAAAGATGCATCAATTTATCAGACGTGA AGGTGAATCATCTTCTCGGCGCTGATTTGGGTCAGACCCAATGTGAATGTCCACAGACGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3850#0      CAAGAATTCCCGAGGTTAAAAGAGATGTTACTTGAAGGAACGGTCTGTTTTGGTTTATCG 60
consensus_3850#2      -----------------------------------GGAACCGGCCTGTTCCGGTTTATCG 25
consensus_3850#1      -------------------------CACCGTTCCAGAGCCCGGTCATCCCTAGCCGCACC 35
                                                              *** *       *     * 

consensus_3850#0      AAGTGTACTCTGTAAATGG--TAAAATATATATATA-CGAGAGAGTACTGAATACTAGTA 117
consensus_3850#2      AAGTGTACTCTGTAAACTGGCTAAAAAATATATCTATCGAGAGACGTACGAATACTAGTA 85
consensus_3850#1      TTTCCGACGCTGGCCGGTGCCGCGGCAACAC-TGAACGGAGCGGCCACCGACGGGCGG-- 92
                            ** ***      *        * *  *  *  *** *      **      *  

consensus_3850#0      GCTAAGTGTGTATGTGTATGTACTATATTNGTATGCATGGTATACGTATAACTTCCTGCG 177
consensus_3850#2      GCTAAGTGTGTCGGTGTATGTACT---TTTGTATGCCATGCGTTCGTATAACTTCCGCCG 142
consensus_3850#1      GATGACTCAGGCAACG-GCACGATGAAACCGGA-GCGTAGCAGCAAGGTTTACTTCATCG 150
                      * * * *  *     *       *      * * **   *        *    * *  **

consensus_3850#0      CAAACGTACATGGGATGGAAAACCTGTGTGATTCTTGCAGNTCTTATCGGTATAGAGTNC 237
consensus_3850#2      CAAACGT-CATGGGATGGAAAACCTGTGTGATTCT-GCAGT-CTTATCGGTATAGAGTTC 199
consensus_3850#1      AGCAGGGCCA-GCTGCAGACGGACTACGAGCTGCCGGAACGGCCAG--GGCAGCCGGCGC 207
                         * *  ** *     **    **  * * * *  * *   *     ** *    *  *

consensus_3850#0      CGTCCANAAGCTAGAGCACTTNNCTCGGATGGGACGTGT-TCNTCTTGTGATGCGCTGGT 296
consensus_3850#2      CGTTT-TAAGCTAGAGCACTTTCTC--GATGGAACGTGT-TTC---TGTGATGCG-TGGT 251
consensus_3850#1      GTGGTGCCAGCCTGAACAGTGGCAT--TGTGAATCCTGCCTTCACCAACGACGC--CGGC 263
                              ***  ** ** *         **   * **  *        ** **   ** 

consensus_3850#0      ATGATCG-GCTGATGAATTTATACACGTGATTCGGGCCCTTAAGTTGGATTG-AGAGATT 354
consensus_3850#2      ATGATCG-GCTGATGA--TTAT-CAC-TGATC--GGCCCT--------ACTG-ATGGGTT 295
consensus_3850#1      GCCACCGTGATAAACATGTCCAGCACACAACCC-AGCGTTATACGCGAACAGTACTGGAC 322
                         * ** * * *  *  *    ***   *     **  *        *  * *  *   

consensus_3850#0      GTACGGCATATGGGNNTACAAAGGCATNAACTATAACTAACGAAAAAAGAGGATTGNCTT 414
consensus_3850#2      GT--------CGCTGGT---------TCAAGCATACTTCTCGTAAGGATGCCTCCAGTAA 338
consensus_3850#1      GTGGTCGTGTCGATGCC------GGCGGGAGCTCACCCCACGCGAGAAAGCTCTGCTCAT 376
                      **         *                 *    *     **  *  *            

consensus_3850#0      CCACNGGATAAACATACCCCAATTCAAATAACAACCTANTCGCAACNCCACCGAAAACGA 474
consensus_3850#2      TCCCATCATCACTATCCACCA---CAATGCCCAGGTACGTTGCGAGCCCTCCAATGACCA 395
consensus_3850#1      TGTGATCTTTATTCTGGTGC----TGGTCATTGGAGGGCTCGCAACGTACCTGGGCATTG 432
                              * *   *    *                   * ** *     *     *   

consensus_3850#0      GGGCCCCCAGCGACATACCAGGANTAGGGCCGGAAGCGACACATAGCANAANAGTGCAAA 534
consensus_3850#2      G------CACCAGAATA--AAGATCACAATGAGCAGAGCTTTCTCGCGTGGG-GTGAGCT 446
consensus_3850#1      TGGTGGATAGTG--ATGATGGGATTACTGGAGGCATCCTTACGAGAAGTATGCTTGAACC 490
                              *     **     **  *      * *                   **    

consensus_3850#0      CCCCAAGNCAACCAGAAAAGAAAA--CAGATCAAAACGCAAATCNACAACACNATGGAAC 592
consensus_3850#2      CCCGCCGGCATC--GACACGACCA--CGTCCAGTACTGTTCGCGTATAACGCTGCAAAGA 502
consensus_3850#1      AGCGACAACCCATCAGTAGGGCCGATCAGTGATAATCATCAGCCGATCATACCGCGCATC 550
                        *     *        * *      *       *          *  *  *     *  

consensus_3850#0      GGAAAGNNAAGACAAATATAACAACCATACGCCGANTGTGGACNNAATGAAANGACACNN 652
consensus_3850#2      GCAAGAAGAAGAAAGATGCATCAATT---------TATCAGACGTGAAGGTGAATCATCT 553
consensus_3850#1      ACAGAAACACGTCCCATCGAGAAAGT---------GCTCTAGCTTAAA-ACGGAACTCTA 600
                        *     * *    **  *  **                  *   *        *    

consensus_3850#0      CCCCNCCGCNCACCGGCACCCAACATCCCGCANCCANNCCNCAAACCCCCACGACGNCAN 712
consensus_3850#2      TCTCGGCGCTGATTTGGGTCAGACCCAATGTGAAT-GTCCACAGACGG------------ 600
consensus_3850#1      TACCGATA-AGACTGCAGAATCACACAGGGTTTTCCATCCCATGAC-------------- 645
                         *       *          **     *        **    **              

consensus_3850#0      NACCACNAAGCACAACCCAAGGCCAATCNAGCNCCGAGACAAANCATNCAACAACCAGCC 772
consensus_3850#2      ------------------------------------------------------------
consensus_3850#1      ------------------------------------------------------------
                                                                                  

consensus_3850#0      CACANGGACANCCNACACTGACGGCTTCGCCCATATGGCACAGCCCACANTGGAAACCAA 832
consensus_3850#2      ------------------------------------------------------------
consensus_3850#1      ------------------------------------------------------------
                                                                                  

consensus_3850#0      CTNCCAAACGAGGACATGAGGNAGAGGCACCCTGGGACAGCATAGAGCCNANTGAGAGAT 892
consensus_3850#2      ------------------------------------------------------------
consensus_3850#1      ------------------------------------------------------------
                                                                                  

consensus_3850#0      GAGAAAACGANGGACCAAACNAGCGCAGCATNCACGCAAAAACNCTCGTNCACCCAAACA 952
consensus_3850#2      ------------------------------------------------------------
consensus_3850#1      ------------------------------------------------------------
                                                                                  

consensus_3850#0      CANGNGGANCNACCCGACANATNGGGCCCATGACACNCGAACCCGANAGGCACCGCNCCC 1012
consensus_3850#2      ------------------------------------------------------------
consensus_3850#1      ------------------------------------------------------------
                                                                                  

consensus_3850#0      GAAAGAANCAAATGGAAACCGCAATGGAGCCACCAGGACANTCCCCCCCCGCGANCCCAC 1072
consensus_3850#2      ------------------------------------------------------------
consensus_3850#1      ------------------------------------------------------------
                                                                                  

consensus_3850#0      CCCCCACACCCCCACCAACAACACCCCACNCACGNACCANGC 1114
consensus_3850#2      ------------------------------------------
consensus_3850#1      ------------------------------------------
                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)