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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1214 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCTTGATGTGAATGTATTGGTGCACCAAACTGAGTTCAGTTCGCAACGCATTTTGATATCGTTATCTCCCAATCGCTTTCTTTATTGTGCAATTGCAAATGTTACAACCAGACTCAGTCCAACTCTGTCACTTGTGTGGTACAGATTGACGCGTGCTTATATTGTAAATTTCCGTGTTCAAAATTGTATGAACGACCTTACTTTCCGTGGTGAATTTGTAGTTTAAGTGCAGGAAATTACAGAAAAATGGATAACTCATCCATCAGTGAAATAGATCAAACAGCATTGTTGGTATCCCATCTGGCACAGATGTGCATGGACGCTGACAATGCGGACGTCACCTTTATCGTGAAGGGCGAGCATCTACCAGCGCATCGGAACATCCTAGCGGCAAGGAGCGAATATTTCCGGGCACTTTTATATGGTGGACTGAAGGAGTCTAAGCAGAACGAAATTGCACTCGATGTTCCGGTAGAAGCATTCAAGTTTTTGATGAAATATATCTACACCGGCCGTTTGCCGTTAAAGAAGATGAAGAACACCGACATTCTAGATATACTTGAATTAGCTCATCCAGTATGGGTTTATCGACCTGCAGACGGCTATTTCGGATTACCTTTGCAAAGATATTTGCATGGGACAATGTGTGCTATATATCAAGAACTGCTTGTTTATTAGACCTTAACAGCTTATCCACTGCATGCTACACGTTTATGGACGAGAATGCGAGCAGTGTCTTGAAGTCGGATATGTTCCGTAGCATATCCTATGAGGCCCTGTTCGGTTTATTAAAGCGGACGACTTTTTTCGCTGATGAAGTCGAAATCTTCAAAGCTGTTCATGATTGGTGCCGATTAAATGAAGCAAAATCAGATAAAGCTGAGAAGCTCTATAATCAGGTACGGTTTATGCTGATGTCTCAGCATGACCTTTTGAATGTGGTGCGGAGTGCAAATGTCCTGGATCCGAATCGTCTGTTGGATATAATTGCTGAGAAAGAGAAGTCATCGGAATTGCCTCATCGTGCTACATCCTTGGCGGAGCTGACTATAGCCAATGATAAGATTAAGTGGTCCCCAACATTTTCAAATATGTTGAGCCTGAATGGTGAAATCGATTTGGGTAAACATATCATGGTCAACTGTATTCGAGTGGAAAGTCAAAATGGGTTGGTATAAGTCAATTGA]
[+] EMBL BM585419 [CCGCCCACGCGTCCGCCCACGCGTCCGGCTTGATGTGAATGTATTGGTGCACCAAACTGAGTTCAGTTCGCAACGCATTTTGATATCGTTATCTCCCAATCGCTTTCTTTATTGTGCAATTGCAAATGTTACAACCAGACTCAGTCCAACTCTGTCACTTGTGTGGTACAGATTGACGCGTGCTTATATTGTAAATTTCCGTGTTCAAAATTGTATGAACGACCTTACTTTCCGTGGTGAATTTGTAGTTTAAGTGCAGGAAATTACAGAAAAATGGATAACTCATCCATCAGTGAAATAGATCAAACAGCATTGTTGGTATCCCATCTGGCACAGATGTGCATGGACGCTGACAATGCGGACGTCACCTTTATCGTGAAGGGCGAGCATCTACCAGCGCATCGGAACATCCTAGCGGCAAGGAGCGAATATTTCCGGGCACTTTTATATGGTGGACTGAAGGAGTCTAAGCAGAACGAAATTGCACTCGATGTTCCGGTAGAAGCATTCAAGTTTTTGATGAAATATATCTACACCGGCCGTTTGCCGTTAAAGAAGATGAAGAACACCGACATTCTAGATATACTTGAATTAGCTCATCCAGTATGGGTTTATCGACCTGCAGACGGCTATTTCGGATTACCTTTGCAAAGATATTTGCATGGGACAATGTGTGCTATATATCAAG ]
[+] EMBL BX624952 [ TTTTTGATGAAATATATCTACACCGGCCGTTTGCCGTTAAAGAAGATGAAGAACACCGACATTCTAGATATACTTGAATTAGCTCAT CAGTATGGGTTTATCGACCTGCAGACGGCTATTTCGGATTACCTTTGCAAAGATATTTGCAT GGACAATGTGTGCTATATATCAAGAACTGCTTGTTTATTAGACCTTAACAGCTTATCCACTGCATGCTACACGTTTATGGACGAGAATGCGAGCAGTGTCTTGAAGTCGGATATGTTCCGTAGCATATCCTATGAGGCCCTGTTCGGTTTATTAAAGCGGACGACTTTTTTCGCTGATGAAGTCGAAATCTTCAAAGCTGTTCATGATTGGTGCCGATTAAATGAAGCAAAATCAGATAAAGCTGAGAAGCTCTATAATCAGGTACGGTTTATGCTGATGTCTCAGCATGACCTTTTGAATGTGGTGCGGAGTGCAAATGTCCTGGATCCGAATCGTCTGTTGGATATAATTGCTGAGAAAGAGAAGTCATCGGAATTGCCTCATCGTGCTACATCCTTGGCGGAGCTGACTATAGCCAATGATAAGATTAAGTGGTCCCCAACATTTTCAAATATGTTGAGCCTGAATGGTGAAATCGATTTGGGTAAACATATCATGGTCAACTGTATTCGAGTGGAAAGTCAAAATGGGTTGGTATAAGTCAATTGA]
consensusID : consensus_3857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[CCAGGTAGCTCGAGGCAGAATCGCCACGAGGGTGATCTGTTGGATATAATTGCTGACGAAAGAGAAGTCATCGGAATTGCCTCATCGTGCTACATACCTTGAGCGGAGCTGACTATATGCCCACTGATAANGATTAACGTGGGTCCCCAACAGTTTTCAAGCAGCTAATGTTGAGCCCTGAATGGGTGAAATCCGCACATTGGGGTAAAACATTAATCATGGTGCAACTGGTACTTCGGAGGTGGAAAAGCGTCAACATGGGTTGGGTATAAGGTCAACTTGCAGTCGGACATACGGTCGGTAGAAGATTTTCCACGAGTCCGGAGTTAAAACCACGNGCGGGTNNAGCGCACGCATCNACAACGCGCGTTGCCGTNACCAATTGCTNACCAGGACGATACACAACANTGGCCGTAAACTGATGGAAACCCGGTAANAACGGCGAATATTTGATCCCGGGCANACTTGGCTAGTTTAAGCTCCCGAGTTTAACATTTCCGTAGTATCTACCGCCAAAGGGTATG]
[+] EMBL BX466459 [CCAGGTAGCTCGAGGCAGAATCGCCACGAGGGTGATCTGTTGGATATAATTGCTGACGAAAGAGAAGTCATCGGAATTGCCTCATCGTGCTACATACCTTGAGCGGAGCTGACTATATGCCCACTGATAANGATTAACGTGGGTCCCCAACAGTTTTCAAGCAGCTAATGTTGAGCCCTGAATGGGTGAAATCCGCACATTGGGGTAAAACATTAATCATGGTGCAACTGGTACTTCGGAGGTGGAAAAGCGTCAACATGGGTTGGGTATAAGGTCAACTTGCAGTCGGACATACGGTCGGTAGAAGATTTTCCACGAGTCCGGAGTTAAAACCACGNGCGGGTNNAGCGCACGCATCNACAACGCGCGTTGCCGTNACCAATTGCTNACCAGGACGATACACAACANTGGCCGTAAACTGATGGAAACCCGGTAANAACGGCGAATATTTGATCCCGGGCANACTTGGCTAGTTTAAGCTCCCGAGTTTAACATTTCCGTAGTATCTACCGCCAAAGGGTATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3857#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCTTGATGTGAATGTATTGGTGCACCAAACTGA 60
consensus_3857#1 ------------------------------------------------------------
consensus_3857#0 GTTCAGTTCGCAACGCATTTTGATATCGTTATCTCCCAATCGCTTTCTTTATTGTGCAAT 120
consensus_3857#1 ------------------------------------------------------------
consensus_3857#0 TGCAAATGTTACAACCAGACTCAGTCCAACTCTGTCACTTGTGTGGTACAGATTGACGCG 180
consensus_3857#1 ------------------------------------------------------------
consensus_3857#0 TGCTTATATTGTAAATTTCCGTGTTCAAAATTGTATGAACGACCTTACTTTCCGTGGTGA 240
consensus_3857#1 ------------------------------------------------------------
consensus_3857#0 ATTTGTAGTTTAAGTGCAGGAAATTACAGAAAAATGGATAACTCATCCATCAGTGA-AAT 299
consensus_3857#1 CCAGGTAGCTCGAG-GCAG--AATCGCCACGAGGGTGATCTGTTGGATATAATTGCTGAC 57
**** * ** **** *** * * *** * ** * ** *
consensus_3857#0 AGATCAAACAGCATTGTTGGTATCCCATC-TGGCACAGATGTGCATGGACGCTGACAATG 358
consensus_3857#1 GAAAGAGAAGTCATCGGAATTGCCTCATCGTGCTACATACCTTGAGCGGAGCTGACTATA 117
* * * *** * * * **** ** *** * * * * ****** **
consensus_3857#0 CGGACGTCACCTTTATCGTGAAGGGCGAGCATCTACCAGCGCATCGGAACATCCTAGCGG 418
consensus_3857#1 TG-----CCCACTGATAANGATTAACGTGGGTCCCCAACAGTTTTCAAGCAGC-TAATGT 171
* * * * ** ** ** * ** * * * * * ** * ** *
consensus_3857#0 CAAGGAGCGAATATTTCCGGGCACTTTTATATGGTGGACTGAAGGAGTCTAAGCAGAACG 478
consensus_3857#1 TGAGCCCTGAATG-----GGTGAAATCCGCACATTGGGGTAAAACATT--------AATC 218
** **** ** * * * *** * ** * * **
consensus_3857#0 AAATTGCACTCGATGTTCCGGTAGAAGCATTCAAGTTTTTGATGAAATATATCTACACCG 538
consensus_3857#1 ATGGTGCAACTGGTACTTCGGAGGTGGAA----AAGCGTCAACATGGGTTGGGTATAAGG 274
* **** * * * *** * * * * * * * ** * *
consensus_3857#0 GCCGTTTGCCGTTAAAGAAGATGAAGAACACCGACATTCTAGATATACTTGAATTAGCTC 598
consensus_3857#1 TCAACTTGCAGTCGGACATACGGTCGGTAGAAGATTTTCCACGAGT-CCGGAGTTAA--A 331
* **** ** * * * * ** *** * * * ** ***
consensus_3857#0 ATCCAGTATGGGTTTATCGACCTGCAGACGGCTATTTCGGATTACCTTTGCAAAGATATT 658
consensus_3857#1 ACCACGNGCGGGTNNAGCG---CACGCATCNACAACGCGCGTTGCCGTNACCAAT-TGCT 387
* * * **** * ** * * * ** ** ** * * ** * *
consensus_3857#0 TGCATGGGACAATGTGTGCTATATATCAAGAACTGCTTGTTTATTAGACCTTAACAGCTT 718
consensus_3857#1 NAC-CAGGACGATACACAACANTGGCCGTAAACTGAT-GGAAACCCGGTAANAACGGCGA 445
* **** ** * * ***** * * * * *** **
consensus_3857#0 ATCCACTGCATGCTACACGTTTATGGACGAGAATGCGAGCAGTGTCTTGAAGTCGGATAT 778
consensus_3857#1 AT--ATTTGATCCCGGGCANACTTGGCT---AGTTTAAGC----TCCCGA-GTTTAACAT 495
** * * ** * * *** * * *** ** ** ** * **
consensus_3857#0 GTTCCGTAGCATATCCTATGAGGCCCTGTTCGGTTTATTAAAGCGGACGACTTTTTTCGC 838
consensus_3857#1 -TTCCGTAGTATCTACCGCCAAAGGGTATG------------------------------ 524
******** ** * * * * *
consensus_3857#0 TGATGAAGTCGAAATCTTCAAAGCTGTTCATGATTGGTGCCGATTAAATGAAGCAAAATC 898
consensus_3857#1 ------------------------------------------------------------
consensus_3857#0 AGATAAAGCTGAGAAGCTCTATAATCAGGTACGGTTTATGCTGATGTCTCAGCATGACCT 958
consensus_3857#1 ------------------------------------------------------------
consensus_3857#0 TTTGAATGTGGTGCGGAGTGCAAATGTCCTGGATCCGAATCGTCTGTTGGATATAATTGC 1018
consensus_3857#1 ------------------------------------------------------------
consensus_3857#0 TGAGAAAGAGAAGTCATCGGAATTGCCTCATCGTGCTACATCCTTGGCGGAGCTGACTAT 1078
consensus_3857#1 ------------------------------------------------------------
consensus_3857#0 AGCCAATGATAAGATTAAGTGGTCCCCAACATTTTCAAATATGTTGAGCCTGAATGGTGA 1138
consensus_3857#1 ------------------------------------------------------------
consensus_3857#0 AATCGATTTGGGTAAACATATCATGGTCAACTGTATTCGAGTGGAAAGTCAAAATGGGTT 1198
consensus_3857#1 ------------------------------------------------------------
consensus_3857#0 GGTATAAGTCAATTGA 1214
consensus_3857#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||