cluster # 3859

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Anopheles gambiae
cluster # 3859 cluster # 3859 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3859#0 length = 636 sequences # 1

consensus_3859#1 length = 618 sequences # 1
consensus_3859#2 length = 572 sequences # 1

consensusID : consensus_3859#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [CCGAGAGCCCCGAACGACGATTCTGTCTGCTGAATTTGGCCGTGCCTGCGTCTAGGAGCGGTTCGCATCTCGTAATCCTCCTCATCCAGCCGTGCAGCCGTGTTTGTTTGGGTGCAGTGACCACTACAGTGTGTGCCGTATTTCTGTGTCCGTGTGTGTGTGTTCGTGTGTTCGTGTGCGATTGTGCAAAAGGGGCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGTCTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAGTGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAAACAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATTTGGCGAAATATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAAGCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACAGTCCGGCACCGCCGCCTCCGGGCGCGCTACGTCCGCAGATGGTCCCGAGACATCAGGCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACC]

[+] EMBL BM624308             [CCGAGAGCCCCGAACGACGATTCTGTCTGCTGAATTTGGCCGTGCCTGCGTCTAGGAGCGGTTCGCATCTCGTAATCCTCCTCATCCAGCCGTGCAGCCGTGTTTGTTTGGGTGCAGTGACCACTACAGTGTGTGCCGTATTTCTGTGTCCGTGTGTGTGTGTTCGTGTGTTCGTGTGCGATTGTGCAAAAGGGGCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGTCTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAGTGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAAACAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATTTGGCGAAATATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAAGCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACAGTCCGGCACCGCCGCCTCCGGGCGCGCTACGTCCGCAGATGGTCCCGAGACATCAGGCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACC]




>consensus_3859#0
CCGAGAGCCCCGAACGACGATTCTGTCTGCTGAATTTGGCCGTGCCTGCGTCTAGGAGCG
GTTCGCATCTCGTAATCCTCCTCATCCAGCCGTGCAGCCGTGTTTGTTTGGGTGCAGTGA
CCACTACAGTGTGTGCCGTATTTCTGTGTCCGTGTGTGTGTGTTCGTGTGTTCGTGTGCG
ATTGTGCAAAAGGGGCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGTCTAGCA
ACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAGTGCAGC
GTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAAACAAAAA
ATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATTTGGCGA
AATATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAAGCCGGG
CACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACAGTCCGG
CACCGCCGCCTCCGGGCGCGCTACGTCCGCAGATGGTCCCGAGACATCAGGCAGTACCGA
ACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACC

consensusID : consensus_3859#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGACCGGAAGTTAGTGTGTATTTGTGAGTGTGTTTGTGCGCCGTTTCGTGTGTGAAGCAAAGCTCCTCCCTCCCCTCGGAGCCACACTTCCGTTTGCCGGTTACCGTGTGCACGTTTTGCAGTGTATCCACCTCTGTCTGTGTGTGTGTGTGTGTATTTGTGTGCAGCTATTGAAAGTGGTATTGGTGAGCGAGCGAGCAAGCGCAAGCATATATGTGTGGGAAATAGAAAATCCACCCAGCCAACATCCATTCCCCCGCTCGATGCAACATTGTTAGAAGAAGCAGCGGTTGTTAAGCAGAACGAAGTGTGAACGAAGAGAGAAAGAAAGAGAGAGAAAGGAGCATAGAGAAAAGCAGCGTTCCCGAAGCTTTCTCTGTTAGTGGTTTAGTGCGTTTCAGTGTGTGTGTGTGTGTGTGTGTCTTTGCTGCAGCTCCAACAAGATAGTACAGGCCCATTTGCAGGTCGCAAAAAAGCCGGTCCCTGAGCTATACCCCGTCCGTGTGTGTCCGAGCTCCACGTGCCGTGTGTCAGACAACGCCGGAAAGATACTTCTGTTAAGAGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGCACCACCGCCTGCA]

[+] EMBL BM602531             [CCGACCGGAAGTTAGTGTGTATTTGTGAGTGTGTTTGTGCGCCGTTTCGTGTGTGAAGCAAAGCTCCTCCCTCCCCTCGGAGCCACACTTCCGTTTGCCGGTTACCGTGTGCACGTTTTGCAGTGTATCCACCTCTGTCTGTGTGTGTGTGTGTGTATTTGTGTGCAGCTATTGAAAGTGGTATTGGTGAGCGAGCGAGCAAGCGCAAGCATATATGTGTGGGAAATAGAAAATCCACCCAGCCAACATCCATTCCCCCGCTCGATGCAACATTGTTAGAAGAAGCAGCGGTTGTTAAGCAGAACGAAGTGTGAACGAAGAGAGAAAGAAAGAGAGAGAAAGGAGCATAGAGAAAAGCAGCGTTCCCGAAGCTTTCTCTGTTAGTGGTTTAGTGCGTTTCAGTGTGTGTGTGTGTGTGTGTGTCTTTGCTGCAGCTCCAACAAGATAGTACAGGCCCATTTGCAGGTCGCAAAAAAGCCGGTCCCTGAGCTATACCCCGTCCGTGTGTGTCCGAGCTCCACGTGCCGTGTGTCAGACAACGCCGGAAAGATACTTCTGTTAAGAGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGCACCACCGCCTGCA]




>consensus_3859#1
CCGACCGGAAGTTAGTGTGTATTTGTGAGTGTGTTTGTGCGCCGTTTCGTGTGTGAAGCA
AAGCTCCTCCCTCCCCTCGGAGCCACACTTCCGTTTGCCGGTTACCGTGTGCACGTTTTG
CAGTGTATCCACCTCTGTCTGTGTGTGTGTGTGTGTATTTGTGTGCAGCTATTGAAAGTG
GTATTGGTGAGCGAGCGAGCAAGCGCAAGCATATATGTGTGGGAAATAGAAAATCCACCC
AGCCAACATCCATTCCCCCGCTCGATGCAACATTGTTAGAAGAAGCAGCGGTTGTTAAGC
AGAACGAAGTGTGAACGAAGAGAGAAAGAAAGAGAGAGAAAGGAGCATAGAGAAAAGCAG
CGTTCCCGAAGCTTTCTCTGTTAGTGGTTTAGTGCGTTTCAGTGTGTGTGTGTGTGTGTG
TGTCTTTGCTGCAGCTCCAACAAGATAGTACAGGCCCATTTGCAGGTCGCAAAAAAGCCG
GTCCCTGAGCTATACCCCGTCCGTGTGTGTCCGAGCTCCACGTGCCGTGTGTCAGACAAC
GCCGGAAAGATACTTCTGTTAAGAGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCT
GGAGCACCACCGCCTGCA

consensusID : consensus_3859#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGGCCGTGTTTGTTTGGGTGCAGTGACCACTACAGTGTGTGCCGTATTTCTGTGTCCGTGTGTGTGTGTTCGTGTGTTCGTGTGCGATTGTGCAAAAGGGGCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGTCTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAGTGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAACAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATTTGGCGAATATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAAGCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACAGTCCGGCACCGCCGCCTCCGGCCGCGCTACGTCCGCAGATGGTCCCGAGACATCAGGCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGC]

[+] EMBL BM626603             [CCGCGGACGCGTGGGCGGACGCGTGGGGCCGTGTTTGTTTGGGTGCAGTGACCACTACAGTGTGTGCCGTATTTCTGTGTCCGTGTGTGTGTGTTCGTGTGTTCGTGTGCGATTGTGCAAAAGGGGCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGTCTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAGTGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAACAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATTTGGCGAATATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAAGCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACAGTCCGGCACCGCCGCCTCCGGCCGCGCTACGTCCGCAGATGGTCCCGAGACATCAGGCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGC]




>consensus_3859#2
CCGCGGACGCGTGGGCGGACGCGTGGGGCCGTGTTTGTTTGGGTGCAGTGACCACTACAG
TGTGTGCCGTATTTCTGTGTCCGTGTGTGTGTGTTCGTGTGTTCGTGTGCGATTGTGCAA
AAGGGGCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGTCTAGCAACTTCTTCC
CCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAGTGCAGCGTGACAGCG
TGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAACAAAAAATACCGAAGT
GCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATTTGGCGAATATTACGGG
CAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAAGCCGGGCACAGAAGTGA
CCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACAGTCCGGCACCGCCGCCT
CCGGCCGCGCTACGTCCGCAGATGGTCCCGAGACATCAGGCAGTACCGAACGGAAGTACT
ACAGCCGCGCCTCGTAGCGCCTACCCTGGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3859#0      CCGAGAGCCCCGAACGACGATTCTGTCTGCTGAATTTGGCCGTGCCTGCGTCTAGGAGCG 60
consensus_3859#2      ------------------------------------------------------------
consensus_3859#1      -----------------CCGACCGGAAGTTAGTGTGTATTTGTGAGTGTGTTTGTGCGCC 43
                                                                                  

consensus_3859#0      GTTCGCATCTCGTAA--TCCTCCTCATCCAGCCGTGCAGCCGTGTTTGTTTGGGTGCAGT 118
consensus_3859#2      ---------CCGCGG--ACGCGTGGGCGGACGCGTGGGGCCGTGTTTGTTTGGGTGCAGT 49
consensus_3859#1      GTTTCGTGTGTGAAGCAAAGCTCCTCCCTCCCCTCGGAGCCACACTTCCGTTTGC-CGGT 102
                                 *                    *  *  ***    **   *  *  * **

consensus_3859#0      GACCAC-TACAGTGTGTGCCGTATTTCTGTGTCCGT--GTGTGTGTGTTCGTGTGTTCGT 175
consensus_3859#2      GACCAC-TACAGTGTGTGCCGTATTTCTGTGTCCGT--GTGTGTGTGTTCGTGTGTTCGT 106
consensus_3859#1      TACCGTGTGCACGTTTTGCAGTGTATCCACCTCTGTCTGTGTGTGTGTGTGTGTATTTGT 162
                       ***   * **   * *** ** * **    ** **  **********  **** ** **

consensus_3859#0      GTGCGATTGTGCAAAAGGG-GCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGT 234
consensus_3859#2      GTGCGATTGTGCAAAAGGG-GCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGT 165
consensus_3859#1      GTGCAGCTATTGAAAGTGGTATTGGTGAGCGAGCGAGCAAGCGCAAGCATATATGTGTGG 222
                      ****   * *  ***  **   **       * *      * * ***    *   *  * 

consensus_3859#0      CTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAG 294
consensus_3859#2      CTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAG 225
consensus_3859#1      GAAATAGAAAATCCACCCA--GCCAACATCCATTCCCCCGCTCGATGCAACATTGTTAGA 280
                        *  *     * * ** *   *** ***  *    *  ** ***     **     *  

consensus_3859#0      TGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAAA 354
consensus_3859#2      TGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAA- 284
consensus_3859#1      AGAAGC--AGCGGTTGTTAAGCAGAACGAAGTGTG-AACGAAGAGAGAAAGAAAGAGAG- 336
                       * ***    * *     *  ** *   **  *** *  *** * * *** *** * *  

consensus_3859#0      CAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATT 414
consensus_3859#2      CAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATT 344
consensus_3859#1      -AGAAAGGAGCATAGAGAAAAGCAGCGTTCCCG-----AAGCTT---------TCTCTGT 381
                       * ***  * *  ** *      ** **   **     ***  *          * *  *

consensus_3859#0      TGGCGAAATATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAA 474
consensus_3859#2      TGGCGAA-TATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAA 403
consensus_3859#1      TAGTGGTTTAGT-------GCGTTTCAGTGTGTGTGTGTGTGTGTGTGTCTTTGCTGCAG 434
                      * * *   ** *       ***    * ****     *       *  *        ** 

consensus_3859#0      GCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACA 534
consensus_3859#2      GCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACA 463
consensus_3859#1      CTCCAACAAGATAGTACAGGCCCATTTGCAGGTCGCAAAAAAGCCGGTCCCTGAGCTATA 494
                        *   **    ***        ***  *  *  *   ** *  * *   * *** ** *

consensus_3859#0      GTCCGGCACCGCCGCCTCCGG---GCGCGCTACGTCCG-CAGATGGTCCCGAGACATCAG 590
consensus_3859#2      GTCCGGCACCGCCGCCTCCGG---CCGCGCTACGTCCG-CAGATGGTCCCGAGACATCAG 519
consensus_3859#1      CCCCGTCCGTGT-GTGTCCGAGCTCCACGTGCCGTGTGTCAGACAACGCCGGAAAGATAC 553
                        *** *   *  *  ****     * **   ***  * ****     ***  *    * 

consensus_3859#0      GCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACC-------------- 636
consensus_3859#2      GCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGC------- 572
consensus_3859#1      TTC-TGTTAAGAGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGCACCACCG 612
                          *    *  **********************************              

consensus_3859#0      ------
consensus_3859#2      ------
consensus_3859#1      CCTGCA 618