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Anopheles gambiae
cluster # 3860 cluster # 3860       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3860#0 length = 1269 sequences # 1  
consensus_3860#1 length = 739 sequences # 1  
consensus_3860#2 length = 351 sequences # 1  

consensusID : consensus_3860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1269
fasta sequence
                              [GCAGAATCCCCGACGGTTTAGACAGGATATTGTGTTCCGCTGGCGCAATGTGGACCGGTGGCGANGTTGCTGCGTCTAATATCTACCCGTGGAACGACCGCACACCGGATGAGTGCACGCTTCCTGCGTGGCATACGATTTGCCCTACGCCGGAAGGGGCCACCTGGATATACATGTGTGCTGCGATGTGACGGCTGTACAAACTACGACTACACCTGGCTCCTACAACCAGCACCTGACACTGTTGCTGCGTGCCCAGCACAGGAGTCTGGTCAATCATCCTAACATACGACTGTTCTGATCTGTGACGAACTGCTGTGTCTCCCGGGGACTGTGTCAATAAAATCGCCTTCGGTCAGCCATGGCACNGGCTGTTACCAGTATCCCTGGGATTGGCCATGATCGTGTACGTGTCCAAAAAAACTGGCACCGGAAAGTTCGGANATGTTGCCGGTACGATCATCAACGTGCGGTACGTTGCTTACAGCGGCACACTGTACTTGACGGTCACGATGGAAACGGAATGCGATACGTAACGAATCGGCGCAGTATTGATACGCGCACAGATTCCTGACTGCGAGGAGGACACTTGTGCTGGCCAATCCAACGGTACGGAGTGGANGGATGCGATTCTTACATNCACAATTTTACCCGCATCGTACGTTTCCGGGGCATGATATACAGGAACTGCTGCGGTGAACCGTCACGCATCCGCAACTTCCAGCTCACGGGGACCGGTTATCGACCCGTCNTGGTCTACCNGTTTACCAACCGGCTGACATGGGATACCGAAACCGAACGGCTTGACCTGGGATTCACAAGTTGGGGGACTTGACAGAACGGTACTAAGGATAAGACCCCGGAAGCNGTGCATGAANGGAACGCCAATCCCNGCCCNGGGNTNCCTTGGCAGACNTNNACAGTAAAGCCAACTGTTACGGGTTNTGCACATNGTACGCATCAACGTNGGATGGGGNGTNAATACGCGGGGNGGCACCNAAATAAAGNGCCACGTTCTCCGTAGCACACACTCNCCNGTNCTCGGGCGTANCGTNTGTGTAAAATGCNGACACCCACCGTGGTACACGAGGGTTTCCANGCCACCNAGGNCAACANCTAGATAGNGGATGTGGACCTAAACNATAGTGGCAAAACACAGAAGNCGAANTGCTACGAGATGAACAACCAGTGACGAATCAAGTNATNTGGATGAGGGAGCACAANTCTCTCNNTCTTTTGCTTGCAGAAGATGNCAAAGNNATATCGTGA]

[+] EMBL AL695057             [GCAGAATCCCCGACGGTTTAGACAGGATATTGTGTTCCGCTGGCGCAATGTGGACCGGTGGCGANGTTGCTGCGTCTAATATCTACCCGTGGAACGACCGCACACCGGATGAGTGCACGCTTCCTGCGTGGCATACGATTTGCCCTACGCCGGAAGGGGCCACCTGGATATACATGTGTGCTGCGATGTGACGGCTGTACAAACTACGACTACACCTGGCTCCTACAACCAGCACCTGACACTGTTGCTGCGTGCCCAGCACAGGAGTCTGGTCAATCATCCTAACATACGACTGTTCTGATCTGTGACGAACTGCTGTGTCTCCCGGGGACTGTGTCAATAAAATCGCCTTCGGTCAGCCATGGCACNGGCTGTTACCAGTATCCCTGGGATTGGCCATGATCGTGTACGTGTCCAAAAAAACTGGCACCGGAAAGTTCGGANATGTTGCCGGTACGATCATCAACGTGCGGTACGTTGCTTACAGCGGCACACTGTACTTGACGGTCACGATGGAAACGGAATGCGATACGTAACGAATCGGCGCAGTATTGATACGCGCACAGATTCCTGACTGCGAGGAGGACACTTGTGCTGGCCAATCCAACGGTACGGAGTGGANGGATGCGATTCTTACATNCACAATTTTACCCGCATCGTACGTTTCCGGGGCATGATATACAGGAACTGCTGCGGTGAACCGTCACGCATCCGCAACTTCCAGCTCACGGGGACCGGTTATCGACCCGTCNTGGTCTACCNGTTTACCAACCGGCTGACATGGGATACCGAAACCGAACGGCTTGACCTGGGATTCACAAGTTGGGGGACTTGACAGAACGGTACTAAGGATAAGACCCCGGAAGCNGTGCATGAANGGAACGCCAATCCCNGCCCNGGGNTNCCTTGGCAGACNTNNACAGTAAAGCCAACTGTTACGGGTTNTGCACATNGTACGCATCAACGTNGGATGGGGNGTNAATACGCGGGGNGGCACCNAAATAAAGNGCCACGTTCTCCGTAGCACACACTCNCCNGTNCTCGGGCGTANCGTNTGTGTAAAATGCNGACACCCACCGTGGTACACGAGGGTTTCCANGCCACCNAGGNCAACANCTAGATAGNGGATGTGGACCTAAACNATAGTGGCAAAACACAGAAGNCGAANTGCTACGAGATGAACAACCAGTGACGAATCAAGTNATNTGGATGAGGGAGCACAANTCTCTCNNTCTTTTGCTTGCAGAAGATGNCAAAGNNATATCGTGA]


>consensus_3860#0 GCAGAATCCCCGACGGTTTAGACAGGATATTGTGTTCCGCTGGCGCAATGTGGACCGGTG GCGANGTTGCTGCGTCTAATATCTACCCGTGGAACGACCGCACACCGGATGAGTGCACGC TTCCTGCGTGGCATACGATTTGCCCTACGCCGGAAGGGGCCACCTGGATATACATGTGTG CTGCGATGTGACGGCTGTACAAACTACGACTACACCTGGCTCCTACAACCAGCACCTGAC ACTGTTGCTGCGTGCCCAGCACAGGAGTCTGGTCAATCATCCTAACATACGACTGTTCTG ATCTGTGACGAACTGCTGTGTCTCCCGGGGACTGTGTCAATAAAATCGCCTTCGGTCAGC CATGGCACNGGCTGTTACCAGTATCCCTGGGATTGGCCATGATCGTGTACGTGTCCAAAA AAACTGGCACCGGAAAGTTCGGANATGTTGCCGGTACGATCATCAACGTGCGGTACGTTG CTTACAGCGGCACACTGTACTTGACGGTCACGATGGAAACGGAATGCGATACGTAACGAA TCGGCGCAGTATTGATACGCGCACAGATTCCTGACTGCGAGGAGGACACTTGTGCTGGCC AATCCAACGGTACGGAGTGGANGGATGCGATTCTTACATNCACAATTTTACCCGCATCGT ACGTTTCCGGGGCATGATATACAGGAACTGCTGCGGTGAACCGTCACGCATCCGCAACTT CCAGCTCACGGGGACCGGTTATCGACCCGTCNTGGTCTACCNGTTTACCAACCGGCTGAC ATGGGATACCGAAACCGAACGGCTTGACCTGGGATTCACAAGTTGGGGGACTTGACAGAA CGGTACTAAGGATAAGACCCCGGAAGCNGTGCATGAANGGAACGCCAATCCCNGCCCNGG GNTNCCTTGGCAGACNTNNACAGTAAAGCCAACTGTTACGGGTTNTGCACATNGTACGCA TCAACGTNGGATGGGGNGTNAATACGCGGGGNGGCACCNAAATAAAGNGCCACGTTCTCC GTAGCACACACTCNCCNGTNCTCGGGCGTANCGTNTGTGTAAAATGCNGACACCCACCGT GGTACACGAGGGTTTCCANGCCACCNAGGNCAACANCTAGATAGNGGATGTGGACCTAAA CNATAGTGGCAAAACACAGAAGNCGAANTGCTACGAGATGAACAACCAGTGACGAATCAA GTNATNTGGATGAGGGAGCACAANTCTCTCNNTCTTTTGCTTGCAGAAGATGNCAAAGNN ATATCGTGA



consensusID : consensus_3860#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 739
fasta sequence
                              [TCCTAACATACGCCTGTTCGATCGGACTAACTGTGGTCTCCCGGGTACGGTCAATAAAATCGCCTTCGGTCAGCAGGCACGGCTGTTCCAGTATCCCTGGATGGCCATGATCGTGTACGTGTCCAACACAACCGGCACGGAAAGTTCGGAATGTGCCGGTACGATCATCAACGTGCGGTACGTGCTTACAGCGGCACACTGTATCGACGGTCAGATGGAACGGATGCGATACGTACGAATCGGAGAGTACGATACGCGTACAGATCCTGACTGCGAGTAGGACACTTGCGCTGCGCCAATCCAACGCTACGGAGTGGAGGATGCGATCTTCCATCCCAACTTTACCCGCATCGTACGTTCCGGGCATGATATCGGACTGCTGCGGTTGAACCGTTCGATCGATTTCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTTTACCACCGGGCTGATGGGATTCGATCCGACGCTGTACTGGATTACGGGTTGGGGTCTGACGGAGCGGCTCGAGGTCAGCCCGGTGCTGCTGCAGGCACGCATCCCGCCCGTGTCCTGCAGTCTGAGCAGCTACGCCATCTGTGCCGGGTTTGGCAATGCGACGCTTCACTGTGAGGGTGATTCGGGCGGCCCGATGAAGGCGCAGGTGCCGGAGTACAACTTCCGGTTCGTGCAGTACGGTGTGATATCGGCCGGACCGCGTTGTGGCACGCAGGGTGTGCCCGGCATCAGTTCCCGC]

[+] EMBL BX608820             [TCCTAACATACGCCTGTTCGATCGGACTAACTGTGGTCTCCCGGGTACGGTCAATAAAATCGCCTTCGGTCAGCAGGCACGGCTGTTCCAGTATCCCTGGATGGCCATGATCGTGTACGTGTCCAACACAACCGGCACGGAAAGTTCGGAATGTGCCGGTACGATCATCAACGTGCGGTACGTGCTTACAGCGGCACACTGTATCGACGGTCAGATGGAACGGATGCGATACGTACGAATCGGAGAGTACGATACGCGTACAGATCCTGACTGCGAGTAGGACACTTGCGCTGCGCCAATCCAACGCTACGGAGTGGAGGATGCGATCTTCCATCCCAACTTTACCCGCATCGTACGTTCCGGGCATGATATCGGACTGCTGCGGTTGAACCGTTCGATCGATTTCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTTTACCACCGGGCTGATGGGATTCGATCCGACGCTGTACTGGATTACGGGTTGGGGTCTGACGGAGCGGCTCGAGGTCAGCCCGGTGCTGCTGCAGGCACGCATCCCGCCCGTGTCCTGCAGTCTGAGCAGCTACGCCATCTGTGCCGGGTTTGGCAATGCGACGCTTCACTGTGAGGGTGATTCGGGCGGCCCGATGAAGGCGCAGGTGCCGGAGTACAACTTCCGGTTCGTGCAGTACGGTGTGATATCGGCCGGACCGCGTTGTGGCACGCAGGGTGTGCCCGGCATCAGTTCCCGC]


>consensus_3860#1 TCCTAACATACGCCTGTTCGATCGGACTAACTGTGGTCTCCCGGGTACGGTCAATAAAAT CGCCTTCGGTCAGCAGGCACGGCTGTTCCAGTATCCCTGGATGGCCATGATCGTGTACGT GTCCAACACAACCGGCACGGAAAGTTCGGAATGTGCCGGTACGATCATCAACGTGCGGTA CGTGCTTACAGCGGCACACTGTATCGACGGTCAGATGGAACGGATGCGATACGTACGAAT CGGAGAGTACGATACGCGTACAGATCCTGACTGCGAGTAGGACACTTGCGCTGCGCCAAT CCAACGCTACGGAGTGGAGGATGCGATCTTCCATCCCAACTTTACCCGCATCGTACGTTC CGGGCATGATATCGGACTGCTGCGGTTGAACCGTTCGATCGATTTCAGCTCAGGAGACGT TTCGCCCGTCTGTCTACCGTTTACCACCGGGCTGATGGGATTCGATCCGACGCTGTACTG GATTACGGGTTGGGGTCTGACGGAGCGGCTCGAGGTCAGCCCGGTGCTGCTGCAGGCACG CATCCCGCCCGTGTCCTGCAGTCTGAGCAGCTACGCCATCTGTGCCGGGTTTGGCAATGC GACGCTTCACTGTGAGGGTGATTCGGGCGGCCCGATGAAGGCGCAGGTGCCGGAGTACAA CTTCCGGTTCGTGCAGTACGGTGTGATATCGGCCGGACCGCGTTGTGGCACGCAGGGTGT GCCCGGCATCAGTTCCCGC



consensusID : consensus_3860#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence
                              [CCCAACTGTACCCGCATCGTACGTTCCGGGCATGATATCGGACGGCTGCGGCTGAACCGTTCGATCGATGCCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTCCACCACCGGGCTGAAGGGATCCGATCCGACGCTGGACTGGATCACGGGTTGGGGGCTGACGGAGCGGCTCGAGGTCAGCCCGGGGCTGCTGCAGGCACGCATCCCGCCCGGGGCCCGCAGTCTGAGCAGCTACGCCATCTGGGCCGGGGTGGGCAAGGCGACGCCTCACGGGGAGGGGGAACCGGGCGGCTCGAAGAAGGCGCAGGGGCCGGAGGACAACCTCCGGGCCGGGCAGGACGGGGGG]

[+] EMBL BX617872             [CCCAACTGTACCCGCATCGTACGTTCCGGGCATGATATCGGACGGCTGCGGCTGAACCGTTCGATCGATGCCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTCCACCACCGGGCTGAAGGGATCCGATCCGACGCTGGACTGGATCACGGGTTGGGGGCTGACGGAGCGGCTCGAGGTCAGCCCGGGGCTGCTGCAGGCACGCATCCCGCCCGGGGCCCGCAGTCTGAGCAGCTACGCCATCTGGGCCGGGGTGGGCAAGGCGACGCCTCACGGGGAGGGGGAACCGGGCGGCTCGAAGAAGGCGCAGGGGCCGGAGGACAACCTCCGGGCCGGGCAGGACGGGGGG]


>consensus_3860#2 CCCAACTGTACCCGCATCGTACGTTCCGGGCATGATATCGGACGGCTGCGGCTGAACCGT TCGATCGATGCCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTCCACCACCGGGCTG AAGGGATCCGATCCGACGCTGGACTGGATCACGGGTTGGGGGCTGACGGAGCGGCTCGAG GTCAGCCCGGGGCTGCTGCAGGCACGCATCCCGCCCGGGGCCCGCAGTCTGAGCAGCTAC GCCATCTGGGCCGGGGTGGGCAAGGCGACGCCTCACGGGGAGGGGGAACCGGGCGGCTCG AAGAAGGCGCAGGGGCCGGAGGACAACCTCCGGGCCGGGCAGGACGGGGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3860#1      ------------------------------------------------------------
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      GCAGAATCCCCGACGGTTTAGACAGGATATTGTGTTCCGCTGGCGCAATGTGGACCGGTG 60
                                                                                  

consensus_3860#1      ------------------------------------------------------------
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      GCGANGTTGCTGCGTCTAATATCTACCCGTGGAACGACCGCACACCGGATGAGTGCACGC 120
                                                                                  

consensus_3860#1      ------------------------------------------------------------
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      TTCCTGCGTGGCATACGATTTGCCCTACGCCGGAAGGGGCCACCTGGATATACATGTGTG 180
                                                                                  

consensus_3860#1      ------------------------------------------------------------
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      CTGCGATGTGACGGCTGTACAAACTACGACTACACCTGGCTCCTACAACCAGCACCTGAC 240
                                                                                  

consensus_3860#1      ------------------------------------------------------------
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      ACTGTTGCTGCGTGCCCAGCACAGGAGTCTGGTCAATCATCCTAACATACGACTGTTCTG 300
                                                                                  

consensus_3860#1      ------TCCTAACATACGCCTGTTCGATCGGACTAACTGTGGTCTCCCGGGTACGGTCAA 54
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      ATCTGTGACGAACTGCTGTGTCTCCCGGGGACTGTGTCAATAAAATCGCCTTCGGTCAGC 360
                                                                                  

consensus_3860#1      TAAAATCGCCTTCGGTCAGCAGGCACGGCTGTTCCAGTATCCCTGGATGGCCATGATCGT 114
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      CATGGCACNGGCTGTTACCAGTATCCCTGGGATTGGCCATGATCGTGTACGTGTCCAAAA 420
                                                                                  

consensus_3860#1      GTACGTGTCCAACACAACCGGCACGGAAAGTTCGGAATGTGCCGGTACGATCATCAACGT 174
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      AAACTGGCACCGGAAAGTTCGGANATGTTGCCGGTACGATCATCAACGTGCGGTACGTTG 480
                                                                                  

consensus_3860#1      GCGGTACGTGCTTACAGCGGCACACTGTATCGACGGTCAGATGGAACGGATGCGATACGT 234
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      CTTACAGCGGCACACTGTACTTGACGGTCACGATGGAAACGGAATGCGATACGTAACGAA 540
                                                                                  

consensus_3860#1      ACGAATCGGAGAGTACGATACGCGTACAGATCCTGACTGCGAGTAGGACACTTGCGCTGC 294
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      TCGGCGCAGTATTGATACGCGCACAGATTCCTGACTGCGAGGAGGACACTTGTGCTGGCC 600
                                                                                  

consensus_3860#1      GCCAATCCAACGCTACGGAGTGGAGGATGCGATCTTCCATCCCAACTTTACCCGCATCGT 354
consensus_3860#2      ----------------------------------------CCCAACTGTACCCGCATCGT 20
consensus_3860#0      AATCCAACGGTACGGAGTGGANGGATGCGATTCTTACATNCACAATTTTACCCGCATCGT 660
                                                              * *** * ************

consensus_3860#1      ACGTTCC--GGGCATGATATC---GGACTGCTGCGGTTGAACCGT------TCGATCGAT 403
consensus_3860#2      ACGTTCC--GGGCATGATATC---GGACGGCTGCGGCTGAACCGT------TCGATCGAT 69
consensus_3860#0      ACGTTTCCGGGGCATGATATACAGGAACTGCTGCGG-TGAACCGTCACGCATCCGCAACT 719
                      ***** *  ***********    * ** ******* ********      **      *

consensus_3860#1      TTCAGCTCA-GGAGAC--GTT-TCG-CCCGTCT--GTCTACCG-TTTACCACCGGGCTGA 455
consensus_3860#2      GCCAGCTCA-GGAGAC--GTT-TCG-CCCGTCT--GTCTACCG-TCCACCACCGGGCTGA 121
consensus_3860#0      TCCAGCTCACGGGGACCGGTTATCGACCCGTCNTGGTCTACCNGTTTACCAACCGGCTGA 779
                        ******* ** ***  *** *** ******   *******  *  **** * ******

consensus_3860#1      --TGGGATTC---GATCCGACG--CTGTACTGGA--TTACGGGTTGGGGT--CTGACGGA 504
consensus_3860#2      --AGGGATCC---GATCCGACG--CTGGACTGGA--TCACGGGTTGGGGG--CTGACGGA 170
consensus_3860#0      CATGGGATACCGAAACCGAACGGCTTGACCTGGGATTCACAAGTTGGGGGACTTGACAGA 839
                         ***** *    * *  ***   **  ****   * **  *******    **** **

consensus_3860#1      GCGG--CTCGAGGTCAG--CCCGGTGCTGCTGCAGGCACGCA--------TCCCGCCCGT 552
consensus_3860#2      GCGG--CTCGAGGTCAG--CCCGGGGCTGCTGCAGGCACGCA--------TCCCGCCCGG 218
consensus_3860#0      ACGGTACTAAGGATAAGACCCCGGAAGCNGTGCATGAANGGAACGCCAATCCCNGCCCNG 899
                       ***  **   * * **  *****      **** * * * *         ** ****  

consensus_3860#1      GTCCT-----GCAG-TCTGAGCAGCTACGCCATCTGTGCCGGGTTTGGCAATGCG-ACGC 605
consensus_3860#2      GGCCC-----GCAG-TCTGAGCAGCTACGCCATCTGGGCCGGGGTGGGCAAGGCG-ACGC 271
consensus_3860#0      GGNTNCCTTGGCAGACNTNNACAGTAAAGCCAACTGTTACGGGTTNTGCACATNGTACGC 959
                      *         ****   *   ***  * **** ***   **** *  ***    * ****

consensus_3860#1      TTCA-CT-GTGAGGGTGATTC--------GGGCGGC--CCGATGAAGGCGCAGGTGCC-- 651
consensus_3860#2      CTCA-CG-GGGAGGGGGAACC--------GGGCGGC--TCGAAGAAGGCGCAGGGGCC-- 317
consensus_3860#0      ATCAACGTNGGATGGGGNGTNAATACGCGGGGNGGCACCNAAATAAAGNGCCACGTTCTC 1019
                       *** *    ** ** *            *** ***     *  ** * **      *  

consensus_3860#1      ---GGAGTACAACTTCCGGTTC--GTGCAGTACGGTGTGATATCGGCCGGACCGCGTTGT 706
consensus_3860#2      ---GGAGGACAACCTCCGGGCC--GGGCAGGACGGGGGG--------------------- 351
consensus_3860#0      CGTAGCACACACTCNCCNGTNCTCGGGCGTANCGTNTGTGTAAAATGCNGACACCCACCG 1079
                          *   ***    ** *  *  * **    **                          

consensus_3860#1      GGCACGCAGGGTGTGCCCGGCATCAGTTCCCGC--------------------------- 739
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      TGGTACACGAGGGTTTCCANGCCACCNAGGNCAACANCTAGATAGNGGATGTGGACCTAA 1139
                                                                                  

consensus_3860#1      ------------------------------------------------------------
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      ACNATAGTGGCAAAACACAGAAGNCGAANTGCTACGAGATGAACAACCAGTGACGAATCA 1199
                                                                                  

consensus_3860#1      ------------------------------------------------------------
consensus_3860#2      ------------------------------------------------------------
consensus_3860#0      AGTNATNTGGATGAGGGAGCACAANTCTCTCNNTCTTTTGCTTGCAGAAGATGNCAAAGN 1259
                                                                                  

consensus_3860#1      ----------
consensus_3860#2      ----------
consensus_3860#0      NATATCGTGA 1269
                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)