These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1269 fasta sequence [GCAGAATCCCCGACGGTTTAGACAGGATATTGTGTTCCGCTGGCGCAATGTGGACCGGTGGCGANGTTGCTGCGTCTAATATCTACCCGTGGAACGACCGCACACCGGATGAGTGCACGCTTCCTGCGTGGCATACGATTTGCCCTACGCCGGAAGGGGCCACCTGGATATACATGTGTGCTGCGATGTGACGGCTGTACAAACTACGACTACACCTGGCTCCTACAACCAGCACCTGACACTGTTGCTGCGTGCCCAGCACAGGAGTCTGGTCAATCATCCTAACATACGACTGTTCTGATCTGTGACGAACTGCTGTGTCTCCCGGGGACTGTGTCAATAAAATCGCCTTCGGTCAGCCATGGCACNGGCTGTTACCAGTATCCCTGGGATTGGCCATGATCGTGTACGTGTCCAAAAAAACTGGCACCGGAAAGTTCGGANATGTTGCCGGTACGATCATCAACGTGCGGTACGTTGCTTACAGCGGCACACTGTACTTGACGGTCACGATGGAAACGGAATGCGATACGTAACGAATCGGCGCAGTATTGATACGCGCACAGATTCCTGACTGCGAGGAGGACACTTGTGCTGGCCAATCCAACGGTACGGAGTGGANGGATGCGATTCTTACATNCACAATTTTACCCGCATCGTACGTTTCCGGGGCATGATATACAGGAACTGCTGCGGTGAACCGTCACGCATCCGCAACTTCCAGCTCACGGGGACCGGTTATCGACCCGTCNTGGTCTACCNGTTTACCAACCGGCTGACATGGGATACCGAAACCGAACGGCTTGACCTGGGATTCACAAGTTGGGGGACTTGACAGAACGGTACTAAGGATAAGACCCCGGAAGCNGTGCATGAANGGAACGCCAATCCCNGCCCNGGGNTNCCTTGGCAGACNTNNACAGTAAAGCCAACTGTTACGGGTTNTGCACATNGTACGCATCAACGTNGGATGGGGNGTNAATACGCGGGGNGGCACCNAAATAAAGNGCCACGTTCTCCGTAGCACACACTCNCCNGTNCTCGGGCGTANCGTNTGTGTAAAATGCNGACACCCACCGTGGTACACGAGGGTTTCCANGCCACCNAGGNCAACANCTAGATAGNGGATGTGGACCTAAACNATAGTGGCAAAACACAGAAGNCGAANTGCTACGAGATGAACAACCAGTGACGAATCAAGTNATNTGGATGAGGGAGCACAANTCTCTCNNTCTTTTGCTTGCAGAAGATGNCAAAGNNATATCGTGA] [+] EMBL AL695057 [GCAGAATCCCCGACGGTTTAGACAGGATATTGTGTTCCGCTGGCGCAATGTGGACCGGTGGCGANGTTGCTGCGTCTAATATCTACCCGTGGAACGACCGCACACCGGATGAGTGCACGCTTCCTGCGTGGCATACGATTTGCCCTACGCCGGAAGGGGCCACCTGGATATACATGTGTGCTGCGATGTGACGGCTGTACAAACTACGACTACACCTGGCTCCTACAACCAGCACCTGACACTGTTGCTGCGTGCCCAGCACAGGAGTCTGGTCAATCATCCTAACATACGACTGTTCTGATCTGTGACGAACTGCTGTGTCTCCCGGGGACTGTGTCAATAAAATCGCCTTCGGTCAGCCATGGCACNGGCTGTTACCAGTATCCCTGGGATTGGCCATGATCGTGTACGTGTCCAAAAAAACTGGCACCGGAAAGTTCGGANATGTTGCCGGTACGATCATCAACGTGCGGTACGTTGCTTACAGCGGCACACTGTACTTGACGGTCACGATGGAAACGGAATGCGATACGTAACGAATCGGCGCAGTATTGATACGCGCACAGATTCCTGACTGCGAGGAGGACACTTGTGCTGGCCAATCCAACGGTACGGAGTGGANGGATGCGATTCTTACATNCACAATTTTACCCGCATCGTACGTTTCCGGGGCATGATATACAGGAACTGCTGCGGTGAACCGTCACGCATCCGCAACTTCCAGCTCACGGGGACCGGTTATCGACCCGTCNTGGTCTACCNGTTTACCAACCGGCTGACATGGGATACCGAAACCGAACGGCTTGACCTGGGATTCACAAGTTGGGGGACTTGACAGAACGGTACTAAGGATAAGACCCCGGAAGCNGTGCATGAANGGAACGCCAATCCCNGCCCNGGGNTNCCTTGGCAGACNTNNACAGTAAAGCCAACTGTTACGGGTTNTGCACATNGTACGCATCAACGTNGGATGGGGNGTNAATACGCGGGGNGGCACCNAAATAAAGNGCCACGTTCTCCGTAGCACACACTCNCCNGTNCTCGGGCGTANCGTNTGTGTAAAATGCNGACACCCACCGTGGTACACGAGGGTTTCCANGCCACCNAGGNCAACANCTAGATAGNGGATGTGGACCTAAACNATAGTGGCAAAACACAGAAGNCGAANTGCTACGAGATGAACAACCAGTGACGAATCAAGTNATNTGGATGAGGGAGCACAANTCTCTCNNTCTTTTGCTTGCAGAAGATGNCAAAGNNATATCGTGA] consensusID : consensus_3860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [TCCTAACATACGCCTGTTCGATCGGACTAACTGTGGTCTCCCGGGTACGGTCAATAAAATCGCCTTCGGTCAGCAGGCACGGCTGTTCCAGTATCCCTGGATGGCCATGATCGTGTACGTGTCCAACACAACCGGCACGGAAAGTTCGGAATGTGCCGGTACGATCATCAACGTGCGGTACGTGCTTACAGCGGCACACTGTATCGACGGTCAGATGGAACGGATGCGATACGTACGAATCGGAGAGTACGATACGCGTACAGATCCTGACTGCGAGTAGGACACTTGCGCTGCGCCAATCCAACGCTACGGAGTGGAGGATGCGATCTTCCATCCCAACTTTACCCGCATCGTACGTTCCGGGCATGATATCGGACTGCTGCGGTTGAACCGTTCGATCGATTTCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTTTACCACCGGGCTGATGGGATTCGATCCGACGCTGTACTGGATTACGGGTTGGGGTCTGACGGAGCGGCTCGAGGTCAGCCCGGTGCTGCTGCAGGCACGCATCCCGCCCGTGTCCTGCAGTCTGAGCAGCTACGCCATCTGTGCCGGGTTTGGCAATGCGACGCTTCACTGTGAGGGTGATTCGGGCGGCCCGATGAAGGCGCAGGTGCCGGAGTACAACTTCCGGTTCGTGCAGTACGGTGTGATATCGGCCGGACCGCGTTGTGGCACGCAGGGTGTGCCCGGCATCAGTTCCCGC] [+] EMBL BX608820 [TCCTAACATACGCCTGTTCGATCGGACTAACTGTGGTCTCCCGGGTACGGTCAATAAAATCGCCTTCGGTCAGCAGGCACGGCTGTTCCAGTATCCCTGGATGGCCATGATCGTGTACGTGTCCAACACAACCGGCACGGAAAGTTCGGAATGTGCCGGTACGATCATCAACGTGCGGTACGTGCTTACAGCGGCACACTGTATCGACGGTCAGATGGAACGGATGCGATACGTACGAATCGGAGAGTACGATACGCGTACAGATCCTGACTGCGAGTAGGACACTTGCGCTGCGCCAATCCAACGCTACGGAGTGGAGGATGCGATCTTCCATCCCAACTTTACCCGCATCGTACGTTCCGGGCATGATATCGGACTGCTGCGGTTGAACCGTTCGATCGATTTCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTTTACCACCGGGCTGATGGGATTCGATCCGACGCTGTACTGGATTACGGGTTGGGGTCTGACGGAGCGGCTCGAGGTCAGCCCGGTGCTGCTGCAGGCACGCATCCCGCCCGTGTCCTGCAGTCTGAGCAGCTACGCCATCTGTGCCGGGTTTGGCAATGCGACGCTTCACTGTGAGGGTGATTCGGGCGGCCCGATGAAGGCGCAGGTGCCGGAGTACAACTTCCGGTTCGTGCAGTACGGTGTGATATCGGCCGGACCGCGTTGTGGCACGCAGGGTGTGCCCGGCATCAGTTCCCGC] consensusID : consensus_3860#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [CCCAACTGTACCCGCATCGTACGTTCCGGGCATGATATCGGACGGCTGCGGCTGAACCGTTCGATCGATGCCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTCCACCACCGGGCTGAAGGGATCCGATCCGACGCTGGACTGGATCACGGGTTGGGGGCTGACGGAGCGGCTCGAGGTCAGCCCGGGGCTGCTGCAGGCACGCATCCCGCCCGGGGCCCGCAGTCTGAGCAGCTACGCCATCTGGGCCGGGGTGGGCAAGGCGACGCCTCACGGGGAGGGGGAACCGGGCGGCTCGAAGAAGGCGCAGGGGCCGGAGGACAACCTCCGGGCCGGGCAGGACGGGGGG] [+] EMBL BX617872 [CCCAACTGTACCCGCATCGTACGTTCCGGGCATGATATCGGACGGCTGCGGCTGAACCGTTCGATCGATGCCAGCTCAGGAGACGTTTCGCCCGTCTGTCTACCGTCCACCACCGGGCTGAAGGGATCCGATCCGACGCTGGACTGGATCACGGGTTGGGGGCTGACGGAGCGGCTCGAGGTCAGCCCGGGGCTGCTGCAGGCACGCATCCCGCCCGGGGCCCGCAGTCTGAGCAGCTACGCCATCTGGGCCGGGGTGGGCAAGGCGACGCCTCACGGGGAGGGGGAACCGGGCGGCTCGAAGAAGGCGCAGGGGCCGGAGGACAACCTCCGGGCCGGGCAGGACGGGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3860#1 ------------------------------------------------------------ consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 GCAGAATCCCCGACGGTTTAGACAGGATATTGTGTTCCGCTGGCGCAATGTGGACCGGTG 60 consensus_3860#1 ------------------------------------------------------------ consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 GCGANGTTGCTGCGTCTAATATCTACCCGTGGAACGACCGCACACCGGATGAGTGCACGC 120 consensus_3860#1 ------------------------------------------------------------ consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 TTCCTGCGTGGCATACGATTTGCCCTACGCCGGAAGGGGCCACCTGGATATACATGTGTG 180 consensus_3860#1 ------------------------------------------------------------ consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 CTGCGATGTGACGGCTGTACAAACTACGACTACACCTGGCTCCTACAACCAGCACCTGAC 240 consensus_3860#1 ------------------------------------------------------------ consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 ACTGTTGCTGCGTGCCCAGCACAGGAGTCTGGTCAATCATCCTAACATACGACTGTTCTG 300 consensus_3860#1 ------TCCTAACATACGCCTGTTCGATCGGACTAACTGTGGTCTCCCGGGTACGGTCAA 54 consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 ATCTGTGACGAACTGCTGTGTCTCCCGGGGACTGTGTCAATAAAATCGCCTTCGGTCAGC 360 consensus_3860#1 TAAAATCGCCTTCGGTCAGCAGGCACGGCTGTTCCAGTATCCCTGGATGGCCATGATCGT 114 consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 CATGGCACNGGCTGTTACCAGTATCCCTGGGATTGGCCATGATCGTGTACGTGTCCAAAA 420 consensus_3860#1 GTACGTGTCCAACACAACCGGCACGGAAAGTTCGGAATGTGCCGGTACGATCATCAACGT 174 consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 AAACTGGCACCGGAAAGTTCGGANATGTTGCCGGTACGATCATCAACGTGCGGTACGTTG 480 consensus_3860#1 GCGGTACGTGCTTACAGCGGCACACTGTATCGACGGTCAGATGGAACGGATGCGATACGT 234 consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 CTTACAGCGGCACACTGTACTTGACGGTCACGATGGAAACGGAATGCGATACGTAACGAA 540 consensus_3860#1 ACGAATCGGAGAGTACGATACGCGTACAGATCCTGACTGCGAGTAGGACACTTGCGCTGC 294 consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 TCGGCGCAGTATTGATACGCGCACAGATTCCTGACTGCGAGGAGGACACTTGTGCTGGCC 600 consensus_3860#1 GCCAATCCAACGCTACGGAGTGGAGGATGCGATCTTCCATCCCAACTTTACCCGCATCGT 354 consensus_3860#2 ----------------------------------------CCCAACTGTACCCGCATCGT 20 consensus_3860#0 AATCCAACGGTACGGAGTGGANGGATGCGATTCTTACATNCACAATTTTACCCGCATCGT 660 * *** * ************ consensus_3860#1 ACGTTCC--GGGCATGATATC---GGACTGCTGCGGTTGAACCGT------TCGATCGAT 403 consensus_3860#2 ACGTTCC--GGGCATGATATC---GGACGGCTGCGGCTGAACCGT------TCGATCGAT 69 consensus_3860#0 ACGTTTCCGGGGCATGATATACAGGAACTGCTGCGG-TGAACCGTCACGCATCCGCAACT 719 ***** * *********** * ** ******* ******** ** * consensus_3860#1 TTCAGCTCA-GGAGAC--GTT-TCG-CCCGTCT--GTCTACCG-TTTACCACCGGGCTGA 455 consensus_3860#2 GCCAGCTCA-GGAGAC--GTT-TCG-CCCGTCT--GTCTACCG-TCCACCACCGGGCTGA 121 consensus_3860#0 TCCAGCTCACGGGGACCGGTTATCGACCCGTCNTGGTCTACCNGTTTACCAACCGGCTGA 779 ******* ** *** *** *** ****** ******* * **** * ****** consensus_3860#1 --TGGGATTC---GATCCGACG--CTGTACTGGA--TTACGGGTTGGGGT--CTGACGGA 504 consensus_3860#2 --AGGGATCC---GATCCGACG--CTGGACTGGA--TCACGGGTTGGGGG--CTGACGGA 170 consensus_3860#0 CATGGGATACCGAAACCGAACGGCTTGACCTGGGATTCACAAGTTGGGGGACTTGACAGA 839 ***** * * * *** ** **** * ** ******* **** ** consensus_3860#1 GCGG--CTCGAGGTCAG--CCCGGTGCTGCTGCAGGCACGCA--------TCCCGCCCGT 552 consensus_3860#2 GCGG--CTCGAGGTCAG--CCCGGGGCTGCTGCAGGCACGCA--------TCCCGCCCGG 218 consensus_3860#0 ACGGTACTAAGGATAAGACCCCGGAAGCNGTGCATGAANGGAACGCCAATCCCNGCCCNG 899 *** ** * * ** ***** **** * * * * ** **** consensus_3860#1 GTCCT-----GCAG-TCTGAGCAGCTACGCCATCTGTGCCGGGTTTGGCAATGCG-ACGC 605 consensus_3860#2 GGCCC-----GCAG-TCTGAGCAGCTACGCCATCTGGGCCGGGGTGGGCAAGGCG-ACGC 271 consensus_3860#0 GGNTNCCTTGGCAGACNTNNACAGTAAAGCCAACTGTTACGGGTTNTGCACATNGTACGC 959 * **** * *** * **** *** **** * *** * **** consensus_3860#1 TTCA-CT-GTGAGGGTGATTC--------GGGCGGC--CCGATGAAGGCGCAGGTGCC-- 651 consensus_3860#2 CTCA-CG-GGGAGGGGGAACC--------GGGCGGC--TCGAAGAAGGCGCAGGGGCC-- 317 consensus_3860#0 ATCAACGTNGGATGGGGNGTNAATACGCGGGGNGGCACCNAAATAAAGNGCCACGTTCTC 1019 *** * ** ** * *** *** * ** * ** * consensus_3860#1 ---GGAGTACAACTTCCGGTTC--GTGCAGTACGGTGTGATATCGGCCGGACCGCGTTGT 706 consensus_3860#2 ---GGAGGACAACCTCCGGGCC--GGGCAGGACGGGGGG--------------------- 351 consensus_3860#0 CGTAGCACACACTCNCCNGTNCTCGGGCGTANCGTNTGTGTAAAATGCNGACACCCACCG 1079 * *** ** * * * ** ** consensus_3860#1 GGCACGCAGGGTGTGCCCGGCATCAGTTCCCGC--------------------------- 739 consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 TGGTACACGAGGGTTTCCANGCCACCNAGGNCAACANCTAGATAGNGGATGTGGACCTAA 1139 consensus_3860#1 ------------------------------------------------------------ consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 ACNATAGTGGCAAAACACAGAAGNCGAANTGCTACGAGATGAACAACCAGTGACGAATCA 1199 consensus_3860#1 ------------------------------------------------------------ consensus_3860#2 ------------------------------------------------------------ consensus_3860#0 AGTNATNTGGATGAGGGAGCACAANTCTCTCNNTCTTTTGCTTGCAGAAGATGNCAAAGN 1259 consensus_3860#1 ---------- consensus_3860#2 ---------- consensus_3860#0 NATATCGTGA 1269 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||