These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 718 fasta sequence [TGCTGGCAGGCATAACCCGCTGGAGTCCCGCGGTAGGATGAGAGAACCAATAGTAAGGATTAAAACCGATACACAAACAAACACAAAAAAGTGGTCCACACGGTAGCGCGGGCCGGTTTGTACGCGAATATGCGGGCTTCGTTGGGCCTGCGAATCTACGACTAATGCACAAAATAGTGCAAATATCCTAATGGAAGCGTTCCGGAAAAGGGAGCCAGTGGAGGCAGAATGGACAGGGCAGATTGGGCAAATGTTTCCCGTCTCGGTGTGTGACAGTTGATGCGTAACGAACATGGCACTCGACACACGATGAGCATAATTAAATCGACATTGGTAGTGAACCGGAACACGGATGGTCAGGATACCGGCCTTAGGTCGCTAGGGCCAAGTGCATCGGGAGGAGAGGTTGGAGTGAGTGCCTGCGTGACAAGTGTGTGGCGCCTCGATGCGTAAACACATGTTGGTCAGCT--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATGGAAGGAGAAGTGGCAGAACAATTGGCTCGGGCAGTTTTGTAAATCCGGAGGTTGTCTTTTGCGTAGGAGCGAACAGATCACTCGGCAGGCGTGTGTGTTTGTGTAGATATACACTCGAATTCTTGTGTAAGTAGTTTCCAATTGTAATGTGTAATCGATAGTAAGGCATACGGCTACCATCACGGTTGATA] [+] EMBL BX616508 [TGCTGGCAGGCATAACCCGCTGGAGTCCCGCGGTAGGATGAGAGAACCAATAGTAAGGATTAAAACCGATACACAAACAAACACAAAAAAGTGGTCCACACGGTAGCGCGGGCCGGTTTGTACGCGAATATGCGGGCTTCGTTGGGCCTGCGAATCTACGACTAATGCACAAAATAGTGCAAATATCCTAATGGAAGCGTTCCGGAAAAGGGAGCCAGTGGAGGCAGAATGGACAGGGCAGATTGGGCAAATGTTTCCCGTCTCGGTGTGTGACAGTTGATGCGTAACGAACATGGCACTCGACACACGATGAGCATAATTAAATCGACATTGGTAGTGAACCGGAACACGGATGGTCAGGATACCGGCCTTAGGTCGCTAGGGCCAAGTGCATCGGGAGGAGAGGTTGGAGTGAGTGCCTGCGTGACAAGTGTGTGGCGCCTCGATGCGTAAACACATGTTGGTCAGCT AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATGGAAGGAGAAGTGGCAGAACAATTGGCTCGGGCAGTTTTGTAAATCCGGAGGTTGTCTTTTGCGTAGGAGCGAACAGATCACTCGGCAGGCGTGTGTGTTTGTGTAGATATACACTCGAATTCTTGTGTAAGTAG ] [+] EMBL BX608312 [ TGCAAATATCCTAATGGAAGCGTTCCGGAAAAGGGAGCCAGTGGAGGCAGAATGGACAGGGCAGATTGGGCAAATGTTTCCCGTCTCGGTGTGTGACAGTTGATGCGTAACGAACATGGCACTCGACACACGATGAGCATAATTAAATCGACATCGGTAGTGAACCGGAACACGGATGGTCAGGATACCGGCCTTAGGTCGCTAGGGCCAAGTGCATCGGGAGGAGAGGTTGGAGTGAGTGCCTGCGTGACAAGTGTGTGGCGCCTCGATGCGTAAACACATGTTGGTCAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATGGAAGGAGAAGTGGCAGAACAATTGGCTCGGGCAGTTTTGTAAATCCGGAGGTTGTCTTTTGCGTAGGAGCGAACAGATCACTCGGCAGGCGTGTGTGTTTGTGTAGATATACACTCGAATTCTTGTGTAAGTAGTTTCCAATTGTAATGTGTAATCGATAGTAAGGCATACGGCTACCATCACGGTTGATA] consensusID : consensus_3866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence [GAGGTTANTCTCGGTGCTTTTCTCCCGGCGCAGTCATTAGCTTAAAACCTTTTCACCCATCCCCCTTTGCTCTGGTGGGGGGACCATTTGTATGATGGGAATGATTTATGGACGATTTTCCATAATCGATGACAGTATCGGGCAGGATAATATTTTCAAATTAAATATCTGTCCCAAACGACTCCCTCCCTAGTGGTTCAAATGCTGGAGCGCAAATGGAGTGCTGGCAGGCATAAACCGTAGAGTNCCGCGGTAGGATGAGAGAACCAATAGCAAGGATTAAGACCGATACACAAACAAAACACAAAAAAGTGGTCCACACGGTAGACGCGGGCCGGTTCGTGCCGCGAATATGCGGGCCTTACGCATGGGCCTGCGAATCTACGACTAATGCNCAAAAATATGCAACACTATCCTANATGGAAGCGTTCCGGGACAAAGGGGNAAACGGGGNAAGCCAGCTGCGACGTGGACCAGCAAAATTGGGGAACCCAAGGGGGCCCACGCAATTATGGGGAGGCCAAAAAATAGGTCATTCCCCCCGGCGTCCTCACCNCACTGCTTAGTTNCAACCNCGACCTACGGCAATCGNCNCGTTAAAANCGCGCACACCAATTGGGNCCACACCTACCCACCCAACCACNGCCAATTCGAACGACCCATTACAATATTTACAANCTNNCCGGAGCCCANNACCACGGCTCAACTA] [+] EMBL AL695139 [GAGGTTANTCTCGGTGCTTTTCTCCCGGCGCAGTCATTAGCTTAAAACCTTTTCACCCATCCCCCTTTGCTCTGGTGGGGGGACCATTTGTATGATGGGAATGATTTATGGACGATTTTCCATAATCGATGACAGTATCGGGCAGGATAATATTTTCAAATTAAATATCTGTCCCAAACGACTCCCTCCCTAGTGGTTCAAATGCTGGAGCGCAAATGGAGTGCTGGCAGGCATAAACCGTAGAGTNCCGCGGTAGGATGAGAGAACCAATAGCAAGGATTAAGACCGATACACAAACAAAACACAAAAAAGTGGTCCACACGGTAGACGCGGGCCGGTTCGTGCCGCGAATATGCGGGCCTTACGCATGGGCCTGCGAATCTACGACTAATGCNCAAAAATATGCAACACTATCCTANATGGAAGCGTTCCGGGACAAAGGGGNAAACGGGGNAAGCCAGCTGCGACGTGGACCAGCAAAATTGGGGAACCCAAGGGGGCCCACGCAATTATGGGGAGGCCAAAAAATAGGTCATTCCCCCCGGCGTCCTCACCNCACTGCTTAGTTNCAACCNCGACCTACGGCAATCGNCNCGTTAAAANCGCGCACACCAATTGGGNCCACACCTACCCACCCAACCACNGCCAATTCGAACGACCCATTACAATATTTACAANCTNNCCGGAGCCCANNACCACGGCTCAACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3866#0 TGCTGGCAGGCATAACCCGCTGGAGTCCCGCGGTAGGATGAGAGAACCAATAGTAAGGAT 60 consensus_3866#1 ------GAGGTTANTCTCGGTGCTTTTCTCCCG----GCGCAGTCATTAGCTTAAAACCT 50 *** * ** ** * * * * * * * ** * consensus_3866#0 TAAAACCGATACACAAACAAACACAAAAAAGTGGTCCACACGGTAGCGCGGGCCGGTTTG 120 consensus_3866#1 TTTCACCCATCCCCC--TTTGCTCTGGTGGGGGGACCATTTGTATGATGGGAATGATTTA 108 * *** ** * * * * * ** *** * * ** * *** consensus_3866#0 TACGCGAATATGCGGGCTTCGTTGGGCCTGCGAATCTACGACTAATGCACAAAATAGTGC 180 consensus_3866#1 TGGACGATTTTCCATAATCGATGACAGTATCGGG--CAGGATAATATTTTCAAATTAAAT 166 * *** * * * * * ** * ** * **** consensus_3866#0 AAATATCCTAATGGAAGCGTTCCGGAAAAGGG-AGCCAGTGGAGGCAGAATGGACAG--G 237 consensus_3866#1 ATCTGTCCCAAACGACTCCCTCCCTAGTGGTTCAAATGCTGGAGCGCAAATGGAGTGCTG 226 * * *** ** ** * *** * * * ***** ****** * * consensus_3866#0 GCAGAT-TGGGCAAATGTTTCCCGTCTCGGTGTGTGACAGTTGATGCGTAACGAACATGG 296 consensus_3866#1 GCAGGCATAAACCGTAGAGTNCCGCGGTAGGATGAGAGAACCAATA-GCAAGGATTAAGA 285 **** * * * * *** * ** ** * ** * ** ** * * consensus_3866#0 CACTCGACACACGATGAGCATAATTAAATCG-----ACATTGGTAGTGAACCGGAACACG 351 consensus_3866#1 C-CGATACACAAACAAAACACAAAAAAGTGGTCCACACGGTAGACGCGGGCCGG--TTCG 342 * * ***** * ** ** ** * * ** * * * * **** ** consensus_3866#0 GATGGTCAGGATACCGGCCTTAGGTCGCTAGGGCCAAGTGCATCGGGAGGAGAGGTTGGA 411 consensus_3866#1 TGCCGCGAATATGCGGGCCTTACGC--ATGGGCCTGCGAATCTACGACTAATGCNCAAAA 400 * * ** * ******* * * ** * * * * * * consensus_3866#0 GTGAGTGCCTGCGTGACAAGTGTGTGGCGCCTCGATGCGTAAACACATGTTGGTCAGCTA 471 consensus_3866#1 ATATGCAACACTATCCTANATG-GAAGCGTTCCGGGACAAAGGGGNAAACGGGGNAAGCC 459 * * * * * ** * *** ** * * * ** * consensus_3866#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATGGAAG 531 consensus_3866#1 AGCTGCGACGTGGACCAGCAAAATTGGGGAACCCAAGGGGGCCCACGCAATTATGGGGAG 519 * ** ** * * * ** ** * * * * ** ** consensus_3866#0 GAGAAGTGGCAGAACAATTGGCTCGGGCAGTTTTGTAAATCCGGAGGTTGTCTTTTGCGT 591 consensus_3866#1 GCCAAAAAATAGGTCA-TTCCCCCCGGCGTCCTCACCNCACTGCTTAGTTNCAACCNCGA 578 * ** ** ** ** * * *** * * * * * ** consensus_3866#0 AGGAGCGAACAGATCACTCGGCAGGCGTGTGTGTTTGTGTAGATATACACTCGAATTCTT 651 consensus_3866#1 CCTACGGCAATCGNCNCGTTAAAANCGCGCACACCAAT-TGGGNCCACACCTACCCACCC 637 * * * * * * ** * * * * **** * consensus_3866#0 GTGTA-AGTAGTTTCCAATTGT--AATGTGTAATCGATAGTAAGGCATACGGCTACCATC 708 consensus_3866#1 AACCACNGCCAATTCGAACGACCCATTACAATATTTACAANCTNNCCGGAGCCCANNACC 697 * * *** ** * * ** * * * * * * * * consensus_3866#0 ACGGTTGATA-- 718 consensus_3866#1 ACGGCTCAACTA 709 **** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||