These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence [GAACGTGGAGTACTTCCCGTACGATGAGCAGACGTGCCTGATGAAGTTTGGCTCGTGGACGTATAACGGGGCACAGGTGGAGCTGCGCCATCTCGATCAGATTCCTGGCAGCAATCTCGTGCAGATTGGGATTGATTTGAGTGAATTTTACCTGTCGGTTGAATGGGACATCCTAGAAGTGCCGGCCAGCCGCAACGAGGAGTATTATCCTTGCTGCCCTGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTTCAGTCGAGGCGGAAAATG] [+] EMBL BX618235 [GAACGTGGAGTACTTCCCGTACGATGAGCAGACGTGCCTGATGAAGTTTGGCTCGTGGACGTATAACGGGGCACAGGTGGAGCTGCGCCATCTCGATCAGATTCCTGGCAGCAATCTCGTGCAGATTGGGATTGATTTGAGTGAATTTTACCTGTCGGTTGAATGGGACATCCTAGAAGTGCCGGCCAGCCGCAACGAGGAGTATTATCCTTGCTGCCCTGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTTCAGTCGAGGCGGAAAATG] consensusID : consensus_387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CCGCAGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTACAGGTAAGTCGCAGGTGCTTAGGGATGCGCCCTCCCCACCGTTAATGGAATACCAATTGATACGGCTTCATGCTAGGAGGGGGGAGCGATACGACC] [+] EMBL BM624946 [CCGCAGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTACAGGTAAGTCGCAGGTGCTTAGGGATGCGCCCTCCCCACCGTTAATGGAATACCAATTGATACGGCTTCATGCTAGGAGGGGGGAGCGATACGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_387#0 GAACGTGGAGTACTTCCCGTACGATGAGCAGACGTGCCTGATGAAGTTTGGCTCGTGGAC 60 consensus_387#1 ------------------------------------------------------------ consensus_387#0 GTATAACGGGGCACAGGTGGAGCTGCGCCATCTCGATCAGATTCCTGGCAGCAATCTCGT 120 consensus_387#1 ------------------------------------------------------------ consensus_387#0 GCAGATTGGGATTGATTTGAGTGAATTTTACCTGTCGGTTGAATGGGACATCCTAGAAGT 180 consensus_387#1 ------------------------------------------------------------ consensus_387#0 GCCGGCCAGCCGCAACGAGGAGTATTATCCTTGCTGCCCTGAACCGTTCTCCGACATTAC 240 consensus_387#1 -----------------------------------CCGCAGAACCGTTCTCCGACATTAC 25 * * ******************** consensus_387#0 GTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTG 300 consensus_387#1 GTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTG 85 ************************************************************ consensus_387#0 CGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAA 360 consensus_387#1 CGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAA 145 ************************************************************ consensus_387#0 GGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGA 420 consensus_387#1 GGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGA 205 ************************************************************ consensus_387#0 AATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGAT 480 consensus_387#1 AATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGAT 265 ************************************************************ consensus_387#0 GATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAG 540 consensus_387#1 GATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAG 325 ************************************************************ consensus_387#0 CACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAA 600 consensus_387#1 CACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAA 385 ************************************************************ consensus_387#0 AATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAG 660 consensus_387#1 AATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAG 445 ************************************************************ consensus_387#0 CAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGA 720 consensus_387#1 CAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGA 505 ************************************************************ consensus_387#0 GGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTTCAGTCGAGGCGGA 780 consensus_387#1 GGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTACAGGTAAGTCGCA 565 ********************************************** *** ** ** * consensus_387#0 AAATG------------------------------------------------------- 785 consensus_387#1 GG-TGCTTAGGGATGCGCCCTCCCCACCGTTAATGGAATACCAATTGATACGGCTTCATG 624 ** consensus_387#0 ------------------------ consensus_387#1 CTAGGAGGGGGGAGCGATACGACC 648 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||