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Anopheles gambiae
cluster # 387 cluster # 387       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_387#0 length = 785 sequences # 1  
consensus_387#1 length = 648 sequences # 1  

consensusID : consensus_387#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 785
fasta sequence
                              [GAACGTGGAGTACTTCCCGTACGATGAGCAGACGTGCCTGATGAAGTTTGGCTCGTGGACGTATAACGGGGCACAGGTGGAGCTGCGCCATCTCGATCAGATTCCTGGCAGCAATCTCGTGCAGATTGGGATTGATTTGAGTGAATTTTACCTGTCGGTTGAATGGGACATCCTAGAAGTGCCGGCCAGCCGCAACGAGGAGTATTATCCTTGCTGCCCTGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTTCAGTCGAGGCGGAAAATG]

[+] EMBL BX618235             [GAACGTGGAGTACTTCCCGTACGATGAGCAGACGTGCCTGATGAAGTTTGGCTCGTGGACGTATAACGGGGCACAGGTGGAGCTGCGCCATCTCGATCAGATTCCTGGCAGCAATCTCGTGCAGATTGGGATTGATTTGAGTGAATTTTACCTGTCGGTTGAATGGGACATCCTAGAAGTGCCGGCCAGCCGCAACGAGGAGTATTATCCTTGCTGCCCTGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTTCAGTCGAGGCGGAAAATG]


>consensus_387#0 GAACGTGGAGTACTTCCCGTACGATGAGCAGACGTGCCTGATGAAGTTTGGCTCGTGGAC GTATAACGGGGCACAGGTGGAGCTGCGCCATCTCGATCAGATTCCTGGCAGCAATCTCGT GCAGATTGGGATTGATTTGAGTGAATTTTACCTGTCGGTTGAATGGGACATCCTAGAAGT GCCGGCCAGCCGCAACGAGGAGTATTATCCTTGCTGCCCTGAACCGTTCTCCGACATTAC GTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTG CGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAA GGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGA AATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGAT GATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAG CACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAA AATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAG CAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGA GGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTTCAGTCGAGGCGGA AAATG



consensusID : consensus_387#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence
                              [CCGCAGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTACAGGTAAGTCGCAGGTGCTTAGGGATGCGCCCTCCCCACCGTTAATGGAATACCAATTGATACGGCTTCATGCTAGGAGGGGGGAGCGATACGACC]

[+] EMBL BM624946             [CCGCAGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTACAGGTAAGTCGCAGGTGCTTAGGGATGCGCCCTCCCCACCGTTAATGGAATACCAATTGATACGGCTTCATGCTAGGAGGGGGGAGCGATACGACC]


>consensus_387#1 CCGCAGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCT ACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCT ATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGA CTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGC TCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTT GCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGC GGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGC CGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTA GCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATC TTTCTCACGGTACAGGTAAGTCGCAGGTGCTTAGGGATGCGCCCTCCCCACCGTTAATGG AATACCAATTGATACGGCTTCATGCTAGGAGGGGGGAGCGATACGACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_387#0      GAACGTGGAGTACTTCCCGTACGATGAGCAGACGTGCCTGATGAAGTTTGGCTCGTGGAC 60
consensus_387#1      ------------------------------------------------------------
                                                                                 

consensus_387#0      GTATAACGGGGCACAGGTGGAGCTGCGCCATCTCGATCAGATTCCTGGCAGCAATCTCGT 120
consensus_387#1      ------------------------------------------------------------
                                                                                 

consensus_387#0      GCAGATTGGGATTGATTTGAGTGAATTTTACCTGTCGGTTGAATGGGACATCCTAGAAGT 180
consensus_387#1      ------------------------------------------------------------
                                                                                 

consensus_387#0      GCCGGCCAGCCGCAACGAGGAGTATTATCCTTGCTGCCCTGAACCGTTCTCCGACATTAC 240
consensus_387#1      -----------------------------------CCGCAGAACCGTTCTCCGACATTAC 25
                                                         * * ********************

consensus_387#0      GTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTG 300
consensus_387#1      GTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTG 85
                     ************************************************************

consensus_387#0      CGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAA 360
consensus_387#1      CGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAA 145
                     ************************************************************

consensus_387#0      GGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGA 420
consensus_387#1      GGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGA 205
                     ************************************************************

consensus_387#0      AATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGAT 480
consensus_387#1      AATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGAT 265
                     ************************************************************

consensus_387#0      GATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAG 540
consensus_387#1      GATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAG 325
                     ************************************************************

consensus_387#0      CACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAA 600
consensus_387#1      CACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAA 385
                     ************************************************************

consensus_387#0      AATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAG 660
consensus_387#1      AATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAG 445
                     ************************************************************

consensus_387#0      CAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGA 720
consensus_387#1      CAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGA 505
                     ************************************************************

consensus_387#0      GGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTTCAGTCGAGGCGGA 780
consensus_387#1      GGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTACAGGTAAGTCGCA 565
                     ********************************************** ***   ** ** *

consensus_387#0      AAATG------------------------------------------------------- 785
consensus_387#1      GG-TGCTTAGGGATGCGCCCTCCCCACCGTTAATGGAATACCAATTGATACGGCTTCATG 624
                        **                                                       

consensus_387#0      ------------------------
consensus_387#1      CTAGGAGGGGGGAGCGATACGACC 648
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)